|
|
| (One intermediate revision by one other user not shown) |
| Line 1: |
Line 1: |
| − | Please input one-sentence summary here.
| + | The rice '''''Os08g0126700''''' was reported as '''''OsC3H54''''' in 2012 <ref name="ref1" /> by researchers from China. |
| − | | |
| | ==Annotated Information== | | ==Annotated Information== |
| | + | ===Gene Symbol=== |
| | + | *'''''Os08g0126700''''' '''''<=>''''' '''''OsC3H54''''' |
| | ===Function=== | | ===Function=== |
| − | Please input function information here.
| + | * Genes in the CCCH family encode zinc finger proteins containing the motif with three cysteines and one histidine residues. <ref name="ref1" /> <ref name="ref2" /> |
| − | | + | * CCCH-type zinc finger proteins have essential functions in various developmental processes in plants. |
| | + | * CCCH family genes have been known to play important roles in RNA processing as RNA-binding proteins. |
| | + | * CCCH-type zinc finger proteins are RNA-binding proteins by virtue of the ability of their defining motif to directly bind to RNA, whereas most of the other zinc finger families are confirmed as DNA-binding or protein-binding proteins. |
| | ===Expression=== | | ===Expression=== |
| − | Please input expression information here.
| + | * The expression profile indicated that most members of this subfamily are regulated by abiotic or biotic stresses, suggesting that they could have an effective role in stress tolerance. |
| − | | |
| | ===Evolution=== | | ===Evolution=== |
| − | Please input evolution information here.
| + | * A typical CCCH protein usually contains 1–6 CCCH-type zinc finger motifs. |
| − | | + | * Based on the different numbers of amino acid spacers between cysteines and histidines in the CCCH motif, a consensus sequence for these was defined as C-X 4–15 -C-X 4–6 -C-X 3 -H (X represents any amino acid) based on the whole-genome analysis of rice and Arabidopsis CCCH proteins <ref name="ref1" /> <ref name="ref2" /> |
| | You can also add sub-section(s) at will. | | You can also add sub-section(s) at will. |
| − |
| |
| | ==Labs working on this gene== | | ==Labs working on this gene== |
| − | Please input related labs here.
| + | * State Key Laboratory of Crop Biology, College of Life Sciences, Shandong Agricultural University, Taian, Shandong 271018, P.R. China |
| − | | |
| | ==References== | | ==References== |
| − | Please input cited references here.
| + | <references> |
| − | | + | * <ref name="ref1"> |
| | + | Wang D, Guo Y, Wu C, Yang G, Li Y, Zheng C. Genome-wide analysis of CCCH zinc |
| | + | finger family in Arabidopsis and rice. BMC Genomics. 2008 Jan 27;9:44. doi: |
| | + | 10.1186/1471-2164-9-44. PubMed PMID: 18221561; PubMed Central PMCID: PMC2267713. |
| | + | </ref> |
| | + | * <ref name="ref2"> |
| | + | Peng X, Zhao Y, Cao J, Zhang W, Jiang H, Li X, Ma Q, Zhu S, Cheng B. CCCH-type |
| | + | zinc finger family in maize: genome-wide identification, classification and |
| | + | expression profiling under abscisic acid and drought treatments. PLoS One. |
| | + | 2012;7(7):e40120. doi: 10.1371/journal.pone.0040120. PubMed PMID: 22792223; |
| | + | PubMed Central PMCID: PMC3391233. |
| | + | </ref> |
| | + | </references> |
| | ==Structured Information== | | ==Structured Information== |
| − | {{JaponicaGene|
| + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 8]] |
| − | GeneName = Os08g0126700|
| |
| − | Description = Zinc finger, CCCH-type domain containing protein|
| |
| − | Version = NM_001067434.1 GI:115474604 GeneID:4344566|
| |
| − | Length = 3514 bp|
| |
| − | Definition = Oryza sativa Japonica Group Os08g0126700, complete gene.|
| |
| − | Source = Oryza sativa Japonica Group
| |
| − | | |
| − | ORGANISM Oryza sativa Japonica Group
| |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| |
| − | |
| |
| − | Chromosome = [[:category:Japonica Chromosome 8|Chromosome 8]]|
| |
| − | AP = Chromosome 8:1535866..1539379|
| |
| − | CDS = 1535970..1536973,1537070..1537249,1537345..1537524,1537710..1537789,1537875..1538048<br>,1538348..1538465,1538570..1538648|
| |
| − | GCID = <gbrowseImage1>
| |
| − | name=NC_008401:1535866..1539379
| |
| − | source=RiceChromosome08
| |
| − | preset=GeneLocation
| |
| − | </gbrowseImage1>|
| |
| − | GSID = <gbrowseImage2>
| |
| − | name=NC_008401:1535866..1539379
| |
| − | source=RiceChromosome08
| |
| − | preset=GeneLocation
| |
| − | </gbrowseImage2>|
| |
| − | CDNA = <cdnaseq>atggaggtgccggagttagtgaagctggcgttcgcgagggtgcagagggtggagccggagcatgtcggcaagatattcggcgtaatgctgctgagggagcccgacgaggacgagttggtgcagctcgcatatggtcccgaggccacgctcctcgccaagatcgaggatactaaagccgcgctcaccgtcatctatgcccgctgctccgccgccgccgcgcacggacctcccggtggcggcggcgtcggcgtcggcggcggcggaggctatcaccagcagccgcagcagctcttctcccgccccccggtacctgcttgcggcggcgttcgccatcactactctcccgccgccgccgccgcggctgcctttggataccaggtccagtcgccgcagtactggccggactcgccgccggcgccaccgactaaggcggcgcagcaggagttcgcgcctcccgggctcgtcgtcgacgcctccgcggagggcccgtacccgctgcgcggcggccaacacgtcctcgacgacaacaactttggcggcgggtactactacccggccggcgaggacgccttccccaatggcgggggtggcggcggggggtcgccggcgagggcgcggcgttcgaacgggctgtccactcgacgtccctgccactacttctccaaaggcatctgcaagaacggccagaactgccactactcgcaccaccaggtgtaccaggacgcgctcgccggcgccgccatcaacggcgacgtgtacaaccaccagccaggcggcgtgacgccgggctcgctcgagacgctggagatggagatcaccgagctgctcaactcgcggcgcgggcagccggtgtccatcgcctcgctgccgacgctctacggcgagaagtacggcaagggactccaagccgacggctacctcaccgagagccagcgccatggcaaggccggatacagcctcaccaggctgctctctcgcctcaacaagatacgggtcatcgaaaggccgcacgggcagcattcggtggttctcgcggaggacgctgccaagtacatggatttcagaggtggcggcggcggtggtggcggcgacacgggctcagttccggcgagctcgcaccagatatacctcaccttcccagccgagagtaccttcgccgaggacgacgtcgccaactacttcgggcagtacgggccggtgcgcgacgtgaggatcccctgccaagagcggcgcatgttcgggttcgtcagcttccagagcccggagacggtgagcaccatcctgatgcggcgcaacccgcatttcatctgcggatcgcgggttctcgtcaagccctacagggagaaatccaaatgcgtcgacaggacgtgcgtggacaacatcaaatcgatggttccctactgtcctccacgcttctttgagtttgatcaagagctctacacagcagagtatgatgcttcgaggttgatgaggaagcagttggcagagaagcgcgagatgctcttggagatggagaggcggcgcgccacagttcggaggcttgaatccatgccgccacagtttgcatacttcgattgcagcattgaggacgccagtcccctccattctctccaggatgattcgaaacaactcgaccttatgaatccatcccttgcatcccctgatccactggagatcgtttcaaacagccaagctcctcctacacaggcaggcaacatttatgatgaccatgagagtaaccagattgaactgctgcctgagagtccattcgccgcatcagcgcctgctggaaacagcatatccacaattatatag</cdnaseq>|
| |
| − | AA = <aaseq>MEVPELVKLAFARVQRVEPEHVGKIFGVMLLREPDEDELVQLAY GPEATLLAKIEDTKAALTVIYARCSAAAAHGPPGGGGVGVGGGGGYHQQPQQLFSRPP VPACGGVRHHYSPAAAAAAAFGYQVQSPQYWPDSPPAPPTKAAQQEFAPPGLVVDASA EGPYPLRGGQHVLDDNNFGGGYYYPAGEDAFPNGGGGGGGSPARARRSNGLSTRRPCH YFSKGICKNGQNCHYSHHQVYQDALAGAAINGDVYNHQPGGVTPGSLETLEMEITELL NSRRGQPVSIASLPTLYGEKYGKGLQADGYLTESQRHGKAGYSLTRLLSRLNKIRVIE RPHGQHSVVLAEDAAKYMDFRGGGGGGGGDTGSVPASSHQIYLTFPAESTFAEDDVAN YFGQYGPVRDVRIPCQERRMFGFVSFQSPETVSTILMRRNPHFICGSRVLVKPYREKS KCVDRTCVDNIKSMVPYCPPRFFEFDQELYTAEYDASRLMRKQLAEKREMLLEMERRR ATVRRLESMPPQFAYFDCSIEDASPLHSLQDDSKQLDLMNPSLASPDPLEIVSNSQAP PTQAGNIYDDHESNQIELLPESPFAASAPAGNSISTII</aaseq>|
| |
| − | DNA = <dnaseqindica>105..1108#1205..1384#1480..1659#1845..1924#2010..2183#2483..2600#2705..2783#gttcctcctgtttcaattccattcttccattgcgggcgtctagtgatcgatcgaggtaggctaggtttaggtttcatgtccaccagtggtggtggtgggtggcaatggaggtgccggagttagtgaagctggcgttcgcgagggtgcagagggtggagccggagcatgtcggcaagatattcggcgtaatgctgctgagggagcccgacgaggacgagttggtgcagctcgcatatggtcccgaggccacgctcctcgccaagatcgaggatactaaagccgcgctcaccgtcatctatgcccgctgctccgccgccgccgcgcacggacctcccggtggcggcggcgtcggcgtcggcggcggcggaggctatcaccagcagccgcagcagctcttctcccgccccccggtacctgcttgcggcggcgttcgccatcactactctcccgccgccgccgccgcggctgcctttggataccaggtccagtcgccgcagtactggccggactcgccgccggcgccaccgactaaggcggcgcagcaggagttcgcgcctcccgggctcgtcgtcgacgcctccgcggagggcccgtacccgctgcgcggcggccaacacgtcctcgacgacaacaactttggcggcgggtactactacccggccggcgaggacgccttccccaatggcgggggtggcggcggggggtcgccggcgagggcgcggcgttcgaacgggctgtccactcgacgtccctgccactacttctccaaaggcatctgcaagaacggccagaactgccactactcgcaccaccaggtgtaccaggacgcgctcgccggcgccgccatcaacggcgacgtgtacaaccaccagccaggcggcgtgacgccgggctcgctcgagacgctggagatggagatcaccgagctgctcaactcgcggcgcgggcagccggtgtccatcgcctcgctgccgacgctctacggcgagaagtacggcaagggactccaagccgacggctacctcaccgagagccagcgccatggcaaggccggatacagcctcaccaggctgctctctcgcctcaacaagatacgggtcatcgaaaggtaatgccaaaataatcttccatttcttctctatcaatcttgttgattgtttcttctcaatttgattgattgattgatttactgtctgacgaacaggccgcacgggcagcattcggtggttctcgcggaggacgctgccaagtacatggatttcagaggtggcggcggcggtggtggcggcgacacgggctcagttccggcgagctcgcaccagatatacctcaccttcccagccgagagtaccttcgccgaggacgacgtcgccaactacttcgggtctgcaattcggcatgtataaaccgcaacttgtttgcttctttccaaatcttaaatgacatggccattttcgcttgtttgattgcgtttgacaggcagtacgggccggtgcgcgacgtgaggatcccctgccaagagcggcgcatgttcgggttcgtcagcttccagagcccggagacggtgagcaccatcctgatgcggcgcaacccgcatttcatctgcggatcgcgggttctcgtcaagccctacagggagaaatccaaatgcgtcgacaggtaaccattacccttcttggttcttgccaacagatagttcaattcacagtagagttttcaaattattaaaaatggtgtttcccatggacttgttagtacttctagctgttactacttttttgtgtttgtgacgagcaaattaaattaattaaagtttttataaatattgcaattttcacgtgcaggacgtgcgtggacaacatcaaatcgatggttccctactgtcctccacgcttctttgagtttgatcaagagctctacacaggtataatagcatttgcatgcacacatcatcacaatgggcaccgattaattctcaaccttcatcttgcttcaattttgtgcaacagcagagtatgatgcttcgaggttgatgaggaagcagttggcagagaagcgcgagatgctcttggagatggagaggcggcgcgccacagttcggaggcttgaatccatgccgccacagtttgcatacttcgattgcagcattgaggacgccagtcccctccattctctccaggatggtctgtgtgttgtgtcattcattggtcattgccagaattatacctctagttgttccatttctccctggttgaagtttgtttagtggctcaaggattatctacttgattatagtgataaattaaataatttaagtaatgaacttaatgattaggttaataagtgcagtagaagaacggtgtttcttaccaaaacatattttttgaagcgtggagaaatgttttaatagtatagtgaatactgaatagtgcacggccaaatatcctgatggttttatgcggcgtttttttcctgtgaacagattcgaaacaactcgaccttatgaatccatcccttgcatcccctgatccactggagatcgtttcaaacagccaagctcctcctacacaggcaggcaacatttatgatgaccatgagaggtacaaacatatttgcagccaatttcttgcatatatgttgctacctgacattgagctagttcctctttgttcactggattgcttcatttgatttctaactgcagtaaccagattgaactgctgcctgagagtccattcgccgcatcagcgcctgctggaaacagcatatccacaattatataggaggaaaaaaattacaaagagacttttgggccttgggttcggaattcaggtgcccctttaggcatttgatggtaatttggtccaagagtaacataagtatacacacacaggaggagacaacaaaaagcaacaatatttttgttgtagatagagaaggaaggcagaagaaaatctcactggtcataattaggaggcacatcttttttgaaaaaaaataattaggaggcacataaacacatggtgttcattttatactttagaagaggacagaaacaacagcttacaaaagaatctcacatggtgcagtagctagcttgcaagaggtaaggacagttacaaaagaattacaatggtggaaacttgagatatagatgtgcagtttgactataattaaggaataggggacaatgtgatatgctaattatactgtcctagaataaggcatgttattatttacatatttagtgttatcttcttttttttagggtataatggcctactggcctttacctttacaagggtgaaaaaaaaaagcagaacctttgctgatattcctattgacaagatgagcagagcgtgcccatttgtacttatcatcagtaatggagaaaattgccttcgatgtttatttcctgctttctgtaaatgatttgtcttgttttgattgcattgatattttgcaagagtaacagataaaaactttgagtgcatcattagatcgcattttcacc</dnaseqindica>|
| |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001067434.1 RefSeq:Os08g0126700]|
| |
| − | }}
| |
| − | [[Category:Genes]] | |
| − | [[Category:Japonica mRNA]]
| |
| − | [[Category:Oryza Sativa Japonica Group]] | |
| − | [[Category:Japonica Genes]] | |
| − | [[Category:Japonica Chromosome 8]]
| |
| − | [[Category:Chromosome 8]]
| |
