Difference between revisions of "Os01g0625300"

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(Created page with "{{JaponicaGene| GeneName = Os01g0625300| Description = Similar to Heat shock transcription factor 31 (Fragment)| Version = NM_001050158.1 GI:115438686 GeneID:4326685| Leng...")
 
 
(2 intermediate revisions by 2 users not shown)
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{{JaponicaGene|
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The rice '''''Os01g0625300''''' was reported as '''''OsHsf-02''''' in 2008 <ref name="ref1" /> by researchers from China.  
GeneName = Os01g0625300|
 
Description = Similar to Heat shock transcription factor 31 (Fragment)|
 
Version = NM_001050158.1 GI:115438686 GeneID:4326685|
 
Length = 1650 bp|
 
Definition = Oryza sativa Japonica Group Os01g0625300, complete gene.|
 
Source = Oryza sativa Japonica Group
 
  
  ORGANISM  Oryza sativa Japonica Group
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==Annotated Information==
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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===Gene Symbol===
            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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*'''''Os01g0625300''''' '''''<=>''''' '''''OsHsf-02'''''
            clade; Ehrhartoideae; Oryzeae; Oryza.
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|
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===Function===
Chromosome = [[:category:Japonica Chromosome 1|Chromosome 1]]|
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* The heat shock transcription factors (HSFs) are the major heat shock factors regulating the heat stress response.
AP = Chromosome 1:26624244..26625893|
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* The heat shock transcription factors (HSFs) participate in regulating the expression of heat shock proteins (HSPs), which are critical in the protection against stress damage and many other important biological processes.
CDS = 26624356..26624610,26624690..26625454|
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GCID = <gbrowseImage1>
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===Expression===
name=NC_008394:26624244..26625893
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* Expression data analysis indicates that HSF proteins are widely expressed in plants.
source=RiceChromosome01
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preset=GeneLocation
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===Evolution===
</gbrowseImage1>|
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* Phylogenetic analyses resulted in the identification of three major clusters of orthologous genes that contain members belonging to both species, which must have been represented in their common ancestor before the taxonomic splitting of the angiosperms.
GSID = <gbrowseImage2>
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name=NC_008394:26624244..26625893
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You can also add sub-section(s) at will.
source=RiceChromosome01
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preset=GeneLocation
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==Labs working on this gene==
</gbrowseImage2>|
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* School of Life Sciences, Shanghai University, Shanghai 200444, China
CDNA = <cdnaseq>atggacgggctgcacacggagctcgcgctggggctgatcgggtgctgcggcggcgacgggcagcagcagacggcgccgttcgtggcgaagacgtaccagatggtgtgcgacccgcggacggacgcgctcgtccggtgggggagggacaacaacagcttcgtcgtcgtcgaccccgccgccttctcgcagctcctcctcccctgcttcttcaagcacggcaacttctccagcttcgttcgccaactcaacacctacggattccggaaggttcaccctgaccggtgggagttcgcgcacgagtcgttcctgcgcggccagacgcacctgctgccgcgcatcgtgcgccgcaagaagcgtggcgagggcggcggtggcggtggcggcgcgtcctgctctttcggtggcggcgccggcgagcaccaggtggctgctgctgcggccagcgtgggaatgtcgggagaggaggaggatgcggcggaggacgtgctggccaaggaggccgcgctgttcgaggaggtgcagaggctgcggcacgagcagacggccatcggggaggagctggcgcggatgagccagcggctgcaggcgacggagcggcggcccgaccagctcatgtccttcctcgccaagctcgccgacgaccccaacgccgtcacgggccacctcctcgagcaggccgccgagaggaagcgccggcgccagcacctcccttcccacgagcccaccgtctgtcccctcccgccggcgccgccgccacaacctccgcagccgctcctggctctcgccggcgccgcggccatggacggcacctactggtggacgacggagcatcatcatcatcatcatcatcagatgaagcccatgacggtgttgccatccttggagccgcccaccgctagctgcggcgtgcaccaagtgccggagctcgggggtggcggcgtgatgggcttaacgacggacggtgaggccaaggtggagccgccattcccattctgtctacttggtcaagctttcttttaa</cdnaseq>|
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* College of Light Industry and Food Sciences, South China University of Technology, Guangzhou 510640, China
AA = <aaseq>MDGLHTELALGLIGCCGGDGQQQTAPFVAKTYQMVCDPRTDALV                    RWGRDNNSFVVVDPAAFSQLLLPCFFKHGNFSSFVRQLNTYGFRKVHPDRWEFAHESF                    LRGQTHLLPRIVRRKKRGEGGGGGGGASCSFGGGAGEHQVAAAAASVGMSGEEEDAAE                    DVLAKEAALFEEVQRLRHEQTAIGEELARMSQRLQATERRPDQLMSFLAKLADDPNAV                    TGHLLEQAAERKRRRQHLPSHEPTVCPLPPAPPPQPPQPLLALAGAAAMDGTYWWTTE                    HHHHHHHQMKPMTVLPSLEPPTASCGVHQVPELGGGGVMGLTTDGEAKVEPPFPFCLL                    GQAFF</aaseq>|
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DNA = <dnaseqindica>113..367#447..1211#ccgtgcgtggctttgccttttgagggatttgacgtgtaggcaaaagctatagctcggagcagtggagtggcttggcttggcttggcttgctgctcggtcgatcgatcgagagatggacgggctgcacacggagctcgcgctggggctgatcgggtgctgcggcggcgacgggcagcagcagacggcgccgttcgtggcgaagacgtaccagatggtgtgcgacccgcggacggacgcgctcgtccggtgggggagggacaacaacagcttcgtcgtcgtcgaccccgccgccttctcgcagctcctcctcccctgcttcttcaagcacggcaacttctccagcttcgttcgccaactcaacacctacgtcagtatcattcaatcgccggcgccggtccgccgtactcccgatgattaacgctttttccgtcttgtggtacgtgcagggattccggaaggttcaccctgaccggtgggagttcgcgcacgagtcgttcctgcgcggccagacgcacctgctgccgcgcatcgtgcgccgcaagaagcgtggcgagggcggcggtggcggtggcggcgcgtcctgctctttcggtggcggcgccggcgagcaccaggtggctgctgctgcggccagcgtgggaatgtcgggagaggaggaggatgcggcggaggacgtgctggccaaggaggccgcgctgttcgaggaggtgcagaggctgcggcacgagcagacggccatcggggaggagctggcgcggatgagccagcggctgcaggcgacggagcggcggcccgaccagctcatgtccttcctcgccaagctcgccgacgaccccaacgccgtcacgggccacctcctcgagcaggccgccgagaggaagcgccggcgccagcacctcccttcccacgagcccaccgtctgtcccctcccgccggcgccgccgccacaacctccgcagccgctcctggctctcgccggcgccgcggccatggacggcacctactggtggacgacggagcatcatcatcatcatcatcatcagatgaagcccatgacggtgttgccatccttggagccgcccaccgctagctgcggcgtgcaccaagtgccggagctcgggggtggcggcgtgatgggcttaacgacggacggtgaggccaaggtggagccgccattcccattctgtctacttggtcaagctttcttttaattaacctgccgaatcatgcccatgcacgtagtaattcttccattccacttactgattcagtcactcgatcctacgtacacactgccaagaaaaaaaaaaacagatgttagttctagtgcaatgcatgcagtaacaccagcatcgatcagtacgtgttgatctgattattcttacagggtacagattagattacagacgatggtgtaaaaccttaattactactgtgtacttatgtacaacgcatcaaacaatagtggtacggtgttgattactagtacttttttgattgctagctgatagttaattagtactactattattagtaagtagtgttttcattaggtggatgcatggacatttcttcttgccctccaagtttgtagggttcatgatttcatcaaagtgcttatattaatctctgctgcataacttttgctgg</dnaseqindica>|
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==References==
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001050158.1 RefSeq:Os01g0625300]|
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<references>
}}
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* <ref name="ref1">
[[Category:Genes]]
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Guo J, Wu J, Ji Q, Wang C, Luo L, Yuan Y, Wang Y, Wang J. Genome-wide analysis
[[Category:Japonica mRNA]]
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of heat shock transcription factor families in rice and Arabidopsis. J Genet
[[Category:Oryza Sativa Japonica Group]]
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Genomics. 2008 Feb;35(2):105-18. doi: 10.1016/S1673-8527(08)60016-8. PubMed PMID:
[[Category:Japonica Genes]]
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18407058.
[[Category:Japonica Chromosome 1]]
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</ref>
[[Category:Chromosome 1]]
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</references>
 +
 
 +
==Structured Information==
 +
    [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 1]]

Latest revision as of 03:13, 29 March 2017

The rice Os01g0625300 was reported as OsHsf-02 in 2008 [1] by researchers from China.

Annotated Information

Gene Symbol

  • Os01g0625300 <=> OsHsf-02

Function

  • The heat shock transcription factors (HSFs) are the major heat shock factors regulating the heat stress response.
  • The heat shock transcription factors (HSFs) participate in regulating the expression of heat shock proteins (HSPs), which are critical in the protection against stress damage and many other important biological processes.

Expression

  • Expression data analysis indicates that HSF proteins are widely expressed in plants.

Evolution

  • Phylogenetic analyses resulted in the identification of three major clusters of orthologous genes that contain members belonging to both species, which must have been represented in their common ancestor before the taxonomic splitting of the angiosperms.

You can also add sub-section(s) at will.

Labs working on this gene

  • School of Life Sciences, Shanghai University, Shanghai 200444, China
  • College of Light Industry and Food Sciences, South China University of Technology, Guangzhou 510640, China

References

  1. Guo J, Wu J, Ji Q, Wang C, Luo L, Yuan Y, Wang Y, Wang J. Genome-wide analysis of heat shock transcription factor families in rice and Arabidopsis. J Genet Genomics. 2008 Feb;35(2):105-18. doi: 10.1016/S1673-8527(08)60016-8. PubMed PMID: 18407058.

Structured Information