|
|
| (2 intermediate revisions by 2 users not shown) |
| Line 1: |
Line 1: |
| − | {{JaponicaGene|
| + | The rice '''''Os03g0292100''''' was reported as '''''OsPP2C32''''' in 2008 <ref name="ref1" /> by researchers from China. |
| − | GeneName = Os03g0292100|
| + | ==Annotated Information== |
| − | Description = Protein phosphatase 2C family protein|
| + | ===Gene Symbol=== |
| − | Version = NM_001056337.2 GI:297600764 GeneID:4332509|
| + | *'''''Os03g0292100''''' '''''<=>''''' '''''OsPP2C32''''' |
| − | Length = 7224 bp|
| + | ===Function=== |
| − | Definition = Oryza sativa Japonica Group Os03g0292100, complete gene.|
| + | * The protein phosphatase 2Cs (PP2Cs) from various organisms have been implicated to act as negative modulators of protein kinase pathways involved in diverse environmental stress responses and developmental processes.<ref name="ref1" /> |
| − | Source = Oryza sativa Japonica Group
| + | * Type 2C protein phosphatases directly regulate abscisic acid-activated protein kinases in Arabidopsis.<ref name="ref1" /> <ref name="ref2" /> |
| | + | ===Expression=== |
| | + | * The expression analyses from the researchers provide evidences that PP2C genes in different subfamilies might play different functional roles in distinct signaling pathways.<ref name="ref1" /> |
| | + | ===Knowledge extension=== |
| | + | * The reversible phosphorylation of proteins is a fundamental mechanism by which living organisms modulate cellular processes including cell cycle events, growth factor responses, hormone and environmental stimuli responses, metabolic control, and developmental processes.<ref name="ref1" /> |
| | + | You can also add sub-section(s) at will. |
| | + | ==Labs working on this gene== |
| | + | * State Key Laboratory of Crop Biology, College of Life Sciences, Shandong Agricultural University, Taian, Shandong 271018, PR China |
| | + | * Biology Department, Millersville University of Pennsylvania, 288 Roddy Hall, 50 E Frederick St, PO Box 1002, Millersville PA, 17551-0302, USA |
| | + | * Department of Chemistry, Fudan University, 220 Handan Road, Shanghai 200433, PR China |
| | + | * Institutes of Biomedical Sciences, Fudan University, 130 Dongan Road, Shanghai 200032, PR China |
| | + | * Centre for Forest Biology & Department of Biology, University of Victoria, Victoria BC, V8W 3N5, Canada |
| | + | ==References== |
| | + | <references> |
| | + | * <ref name="ref1"> |
| | + | Xue T, Wang D, Zhang S, Ehlting J, Ni F, Jakab S, Zheng C, Zhong Y. |
| | + | Genome-wide and expression analysis of protein phosphatase 2C in rice and |
| | + | Arabidopsis. BMC Genomics. 2008 Nov 20;9:550. doi: 10.1186/1471-2164-9-550. |
| | + | PubMed PMID: 19021904; PubMed Central PMCID: PMC2612031. |
| | + | </ref> |
| | + | * <ref name="ref2"> |
| | + | Umezawa T, Sugiyama N, Mizoguchi M, Hayashi S, Myouga F, Yamaguchi-Shinozaki |
| | + | K, Ishihama Y, Hirayama T, Shinozaki K. Type 2C protein phosphatases directly |
| | + | regulate abscisic acid-activated protein kinases in Arabidopsis. Proc Natl Acad |
| | + | Sci U S A. 2009 Oct 13;106(41):17588-93. doi: 10.1073/pnas.0907095106. Epub 2009 |
| | + | Sep 29. PubMed PMID: 19805022; PubMed Central PMCID: PMC2754379. |
| | + | </ref> |
| | + | </references> |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| + | ==Structured Information== |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 3]] |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| |
| − | |
| |
| − | Chromosome = [[:category:Japonica Chromosome 3|Chromosome 3]]|
| |
| − | AP = Chromosome 3:10214215..10221438|
| |
| − | CDS = 10214215..10214697,10214837..10215184,10215344..10215655,10216875..10216982,10221196..10221438<br>|
| |
| − | GCID = <gbrowseImage1>
| |
| − | name=NC_008396:10214215..10221438
| |
| − | source=RiceChromosome03
| |
| − | preset=GeneLocation
| |
| − | </gbrowseImage1>|
| |
| − | GSID = <gbrowseImage2>
| |
| − | name=NC_008396:10214215..10221438
| |
| − | source=RiceChromosome03
| |
| − | preset=GeneLocation
| |
| − | </gbrowseImage2>|
| |
| − | CDNA = <cdnaseq>atgtcctgcacggtcgccatcccgagctcgccggtgttctcgccgtcgcgccgcccgctctcctgcaaggccgcgtccgcgtccgcctcgccggagtccgtatccgtcgccgcgtcctcgccggcgcaggccgcgccccccgccgggtcgccgctccgccccttcgcgctgcgcgcccacctgcgcgaggaggccacgccgtcgccccagccgtcggccgccgcggctgcggcggtctccgcccctgcggggtccgtgcttaagaggcggcgcccggcccctctcgtggttccggtgtgcggcggggcggccgctgccgccgccgccgcggcggtggccgcggtggaatcggatccgaggaacgaggtggaggaggacggcgaggagttcgcggtgtactgccggaggggaaaggggaggagaagggtggagatggaggaccggcatgtggccaaggtcgccctcggcggagaccccaaagtggccttttttggtgtattcgatggccacggcgggaagagcgcggcggagttcgtcgccgagaacatgcccaagttcatggccgaggagatgtgcaaggtggacggcggcgacagtggcgagactgaacaggcagtgaagcggtgctacctgaagacggacgaggaattcctcaagagggaggagagcgggggcgcctgctgcgtcaccgctttgctgcagaaaggtggcctcgttgtgtctaatgccggagattgccgtgccgtgctcagccgcgccgggaaggcagaggcgctcacctctgatcaccgggcctcgcgcgaggatgagagggaaagaattgagaatctgggtggattcgtggtgaattaccgaggaacatggcgagttcagggatccttagcagtgtcaagaggcatcggtgatgcacacctcaagcagtgggtggtgtctgatccagacaccacaactctgggtgttgattcgcagtgcgaattcttgattcttgcctctgatggtttgtgggacaaggtggagaaccaggaggcagttgacattgccaggccgctttacatcagcaacgacaaagcttctcgcatgactgcttgcaggaggctcgtcgaaactgcggttactaggggctcgactgacgatatcagcattcgctctggccggcgcatcgcaacgaccgagcagctccagcaagctcgggcatcccatgatggtgagaggaagaagatccaatatgtgtgtgacatatggggcccacttgagatcggagacgagagtgccagtggtggttgggcgagggccagtcgcaacgccgtcaagctcttgctcgtcggccgccgccgagctcatcgagctactcctatacctccgctgctgcctgttgaagcatcgcctccattcgaggctatcatcgggggtggagaagggaggtggagaggcagcgtcgccaagctctcgcccgtggccaccaccaccagccacggtctacagctcttctcatag</cdnaseq>|
| |
| − | AA = <aaseq>MSCTVAIPSSPVFSPSRRPLSCKAASASASPESVSVAASSPAQA APPAGSPLRPFALRAHLREEATPSPQPSAAAAAAVSAPAGSVLKRRRPAPLVVPVCGG AAAAAAAAAVAAVESDPRNEVEEDGEEFAVYCRRGKGRRRVEMEDRHVAKVALGGDPK VAFFGVFDGHGGKSAAEFVAENMPKFMAEEMCKVDGGDSGETEQAVKRCYLKTDEEFL KREESGGACCVTALLQKGGLVVSNAGDCRAVLSRAGKAEALTSDHRASREDERERIEN LGGFVVNYRGTWRVQGSLAVSRGIGDAHLKQWVVSDPDTTTLGVDSQCEFLILASDGL WDKVENQEAVDIARPLYISNDKASRMTACRRLVETAVTRGSTDDISIRSGRRIATTEQ LQQARASHDGERKKIQYVCDIWGPLEIGDESASGGWARASRNAVKLLLVGRRRAHRAT PIPPLLPVEASPPFEAIIGGGEGRWRGSVAKLSPVATTTSHGLQLFS</aaseq>|
| |
| − | DNA = <dnaseqindica>1..483#623..970#1130..1441#2661..2768#6982..7224#atgtcctgcacggtcgccatcccgagctcgccggtgttctcgccgtcgcgccgcccgctctcctgcaaggccgcgtccgcgtccgcctcgccggagtccgtatccgtcgccgcgtcctcgccggcgcaggccgcgccccccgccgggtcgccgctccgccccttcgcgctgcgcgcccacctgcgcgaggaggccacgccgtcgccccagccgtcggccgccgcggctgcggcggtctccgcccctgcggggtccgtgcttaagaggcggcgcccggcccctctcgtggttccggtgtgcggcggggcggccgctgccgccgccgccgcggcggtggccgcggtggaatcggatccgaggaacgaggtggaggaggacggcgaggagttcgcggtgtactgccggaggggaaaggggaggagaagggtggagatggaggaccggcatgtggccaaggtcgccctcggcggagaccccaaagtggtaagctccacacgacttctccgttcgattcgcgtaaaataagttcacacttctcttcgatcaggagagggttttggggagacttcgtagatttcttcttctgtactaaaatttctggaatttattttcgattgtgtaggccttttttggtgtattcgatggccacggcgggaagagcgcggcggagttcgtcgccgagaacatgcccaagttcatggccgaggagatgtgcaaggtggacggcggcgacagtggcgagactgaacaggcagtgaagcggtgctacctgaagacggacgaggaattcctcaagagggaggagagcgggggcgcctgctgcgtcaccgctttgctgcagaaaggtggcctcgttgtgtctaatgccggagattgccgtgccgtgctcagccgcgccgggaaggcagaggcgctcacctctgatcaccgggcctcgcgcgaggatgagagggaaagaattgagaatctggtaagtggtgcctgcacttgccattctcgctttcttgcatcatttcctgcactagctaagtagacctttgatgatgttggcttgttgcagagtgttttaatctgagttctgagctatcatgagttgaagacttatgtgcttttcttctgtcaatttcagggtggattcgtggtgaattaccgaggaacatggcgagttcagggatccttagcagtgtcaagaggcatcggtgatgcacacctcaagcagtgggtggtgtctgatccagacaccacaactctgggtgttgattcgcagtgcgaattcttgattcttgcctctgatggtttgtgggacaaggtggagaaccaggaggcagttgacattgccaggccgctttacatcagcaacgacaaagcttctcgcatgactgcttgcaggaggctcgtcgaaactgcggttactaggggctcgactgacgatatcagcattgtgatcatacagctgcagcaattctcaagataattttaacttgtcgttggagggagagactgaactcacactccagcttattagcacagcggtggtaaaatgtgtggaagagcagggtattcagatagcataattttaacttgttgaagggagactgaactcgctccagcttagcgcactaacagagcggtggtaaagaagtgtggaagaggagggtattcagatagtatgtcacttggcaagcaaaattttaggagcttgcactattttgctggggttccaacattcaattctttttattcatagcaccattctttctgtaaactgattcaattcattctttgattctaatgtaataaggcgagttactactcacctcatactgtaaggctactatttgcctctgtacatggttagttggtatggatagtttctctgagattttaattgattcaatacacagcagcttaagatatcctttaatatttatctgagtcgcactagctttgttaagatgtttctatttcttggcccagtatgggtgtgttgtgttgcttgttgggttggctgaaagcctgtaggcaaaatttgagtctttaaaccgcaaacataatacatagataaacattttactgcaaacaatacaaatataaatattttaccgataaattatttatgattactttgtttatattttgccaaggctgctccaatctgaacaaacacccctagctaagcttaaatgcaaagcatagtatggaaattacttcgcatacgacctcatactatataccctaagggtttttttttttttttacttcgccatggaatctacatcatctctgagcataaaagaatagtttgagatgattggcatacttgctcagtgctctctgatggtgactgaatgaacattgaactaagggtgtctttggttgggattttgaacttgcttttgtttttgcaaaagccaaaagcaaccaaagggctcaaaagccatagctgcttctacccaaaagctgcttttgctctagtacaaattgaaagcacctccaccccctgcttttagctgtttttgggttaagtttttacccacctgatattggttatgatgtataccggttcgttcttttcttccccgtcgcttctcaatgtgtcgttcctcacgcgctgctttgccctagggttggggcatcgccgcccctccgcccgtcgccagcgctctggccggcgcatcgcaacgaccgagcagctccagcaagctcgggcatcccatgatggtgagaggaagaagatccaatatgtgtgtgacatatggggcccacttgtaagcgggactagttgtttcaaacgccacagctgttgaaccaaacgagcttttccaaaggccacaacccatatttcacatctgcttttcgaaaagctacaacccacagctactttttaaaagccacagcccaaccaaacacaccctaagctttgctagaccacttttgttattcaagaagtttgaacttaatatcagattaggaatctacatttgattttgcaagctttagcttcgctgagatcacacaagttctataagaattttttttaaagataatgggaagcttttagccttttattaaacttaatcaattaagtacattaaggtgatagaactgtacttagaatgcacatagcatcaactggaaataattcaattcataaaggaaattgaaaactatctaacctttcctcggtcattgcacgagtgtattcttcacatgctaatgtactgaagtatatggatcacaaggaacaagatgttgagagcatttgatccataatgtatttgcacttatcattatctaaaaaaaaagtttgcacttatatccataggggaaaatgagccatttcccaaccgtagcagaatcttccgctaggacaattgcacttagtacgttgtagagtggatcgaatgatgataatatcatctccttttgaaaccttcaaggcctgtttagttggtgaaataaaaatttttgggtgtcacatcggacgtttgactggatgtcggaaggagttttcggacacgaatgaaaaaactaatttcataactcgcctgtaaaccgcgagacgaatctgttgagcctaattaatccgtcattagcatacgtgggttactgtaacacttatgactaatcatggactaactaggctcaaataattcgtctcgcgatttacatgcaaattgtgtaattagtctttctttttatttatatttaatgctccgtatatatgtctaaagattcgatgtgatgtttttgagaaaagtttttggggaactaaacagcccccaaacataatgacaattttgaaaagaccaggtagtatgacgtttacgtacagctactaccgtctgttctgctccggagactgaatcttcaggcgtgttgcacccggcaggccgtgtgcacatgattggcactgattaaccgaaccagttttctgtttcgacgaggcgatgcatttggacgcgagacgagaaatcaaattatggaagcaatgactgaaacggcaacggccgcgacttccccccatgatccaccgggctaagcaacacccagaattgtttctgcttccaaatgaaatgcgcgttcaattatcaacacaagaaaacagccaatccgcgttgaatgcgatggatttgtatatatcgagtaaacgattctttgtctgaaaatattatcgacaaagcaattactagcttgtgccaattattagtgccgcttttagtttgcaagtcaatcggcatgcgtcatttcgaaagaatgttttatatgactatgattcgtttatttctctctttctttctttttctaaaattttgattcgcacatggccatgtgtgctcggaccgaaaactttcagtcaagttatttttcttttcaagttaaatgttcgtggaggccattagtagctgtaaacacatgcttctgctgtgaacttagtcccgtgtgattgtgtgaaaaggagattaaaacggcgatgcgtgtttctgtcattaacgtgtcgagcttcgtctactttgaccaaagtttcttatcggacattcaagtggtaaagggactggggagagaagaaattggaactcgcaggaaacgcagttggtgaagctctgaagtctgaactgaatacacaaagctgatcttctgaacctgaactaagatctgatatctcaacggtgtctctttctcaatcccaaccctctgaaatcagattgttcagctagttttagaaaatgtgaagaaccaatgccttcgtaaatatgtcacacacctttttcaaaacttttcatacaaatttggctgatctccaaagccttgcacgtcatatgttttcgtgaaaatggttcttcgtgaagaaactgatctccaaagctttgcataaggctgtgtttagttcacaccaaaattaaaagtttgattgaaattggaacgatgtgatggaaaagttgaaagtttatgtgagtaggaaagttttgatgtgatggaaaaattggaagtttgaataattattttggaactaaacacggcttaataccttctctcacacgaaataacaggtatgatgccccaggctgtcgcatggtcacaccatagacatggtgcttactcaataaaaaaaaatcgtagctcatccctcatcctgaaaggattgcaggcatgtaacttcagtgcatgtagaattattatgtttggttctcctaaaaaaagaattgttaagtttgcagaactccaattcaatgcaggatcaaaaattgaagatctttagagttttaccagaagagaggttgaatgtggttagacaaaaatgttagggtgttccagagtataaccaaggtaaaaataactagcgtaaagtgaaaattcaagagcttggaccactctagattcagaacccaggaattttcctccaaattcgaactgggctattagatacagttctttactgtattagaattgcggtcttccctaccggtgcttatgtctctctctactttcctactgcttgtttggattaccacatgaaggactatatataggaagagtatgctatgtactccctctgtcccaaaaacagacaacttctaagaatgaatatggacaagcgtttgtatgggtttatctttagaattttttttatgggacaaagggtttaattgcttttgttatgtagttctttttttttctctatcactttaattttctgccttgatatatactgggcttcgttcccaggatttcaacactcaaaatagagatttgaaaatgattattgcagtataatgtacttcaaaattttgaatatgaaccatattccaactaatttaaaatataccaccctgtaaaaatataatacctcgtagtactccatttgtcaaaaacataagttttcagatttgacacaaatatcaaagaaaatactcattcattctaaaatataaacatttataggttgtttagcagatattatagtttagaagaaatgactttggtgtccctcaatagacgtgtaagggtaggtgagagtaggatgagatgaattttgaatgggaaataattaatgagaaaagtaacatgatttgaatcatagaaattattatattttggaaagaaatgagcatgtgaaactaaatataaaaatattgtcattggttgagtagaggggtaggtgaagaaattaaaaagtggaaggttgtatttggctaagaagaaggaatatagatgaataaattgttatttttaagataaaatttgaatgttatagattgttatattttggtaccggggagtaagaatttgagggcttatttcaaacagtggattttttttaagtcttttgagtgtaaaaaacatatttatttcgcaacataaaaaatggaccgaaatggaatccaacttcacaattcagcccaagggcattttcgcgaggaataagtccactttgtctcccttaactagtgggcgaatatgattcgtatccctgaagaacgataacatatatctcgatccccaaccattagaaccggtatgatttgactccctctgtggttttagaggatagtttcgctaacgtgccgcctacgtaacggtgttgacctagttttcgtccaacgtgacgtttataacattagaattaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatgggacctatttatcattaaaaaatattatgggatccactgacatgttgggtccacgatcatcatcacctttccttcttcctcctccctctcacttcctctttctctttctctccctcacttccctctttctctttctctccctcttcgcgcatctgtggggagagctagagcagcagcaacagtggaaaggggcggagtagcggtggtggcgggtgagggttggagcgatggtggcatgtcctgtggttggtgacggtggctgtgaccaaggagatcggagacgagagtgccagtggtggttgggcgagggccagtcgcaacgccgtcaagctcttgctcgtcggccgccgccgagctcatcgagctactcctatacctccgctgctgcctgttgaagcatcgcctccattcgaggctatcatcgggggtggagaagggaggtggagaggcagcgtcgccaagctctcgcccgtggccaccaccaccagccacggtctacagctcttctcatag</dnaseqindica>|
| |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001056337.2 RefSeq:Os03g0292100]|
| |
| − | }}
| |
| − | [[Category:Genes]] | |
| − | [[Category:Japonica mRNA]]
| |
| − | [[Category:Oryza Sativa Japonica Group]] | |
| − | [[Category:Japonica Genes]] | |
| − | [[Category:Japonica Chromosome 3]]
| |
| − | [[Category:Chromosome 3]]
| |
