|
|
| (2 intermediate revisions by 2 users not shown) |
| Line 1: |
Line 1: |
| − | {{JaponicaGene|
| + | The rice '''''Os04g0321800''''' was reported as '''''OsPP2C38''''' in 2008 <ref name="ref1" /> by researchers from China. |
| − | GeneName = Os04g0321800|
| + | ==Annotated Information== |
| − | Description = Protein phosphatase 2C-like domain containing protein|
| + | ===Gene Symbol=== |
| − | Version = NM_001059000.1 GI:115457729 GeneID:4335480|
| + | *'''''Os04g0321800''''' '''''<=>''''' '''''OsPP2C38''''' |
| − | Length = 5405 bp|
| + | ===Function=== |
| − | Definition = Oryza sativa Japonica Group Os04g0321800, complete gene.|
| + | * The protein phosphatase 2Cs (PP2Cs) from various organisms have been implicated to act as negative modulators of protein kinase pathways involved in diverse environmental stress responses and developmental processes.<ref name="ref1" /> |
| − | Source = Oryza sativa Japonica Group
| + | * Type 2C protein phosphatases directly regulate abscisic acid-activated protein kinases in Arabidopsis.<ref name="ref1" /> <ref name="ref2" /> |
| − | | + | ===Expression=== |
| − | ORGANISM Oryza sativa Japonica Group
| + | * The expression analyses from the researchers provide evidences that PP2C genes in different subfamilies might play different functional roles in distinct signaling pathways.<ref name="ref1" /> |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | ===Knowledge extension=== |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| + | * The reversible phosphorylation of proteins is a fundamental mechanism by which living organisms modulate cellular processes including cell cycle events, growth factor responses, hormone and environmental stimuli responses, metabolic control, and developmental processes.<ref name="ref1" /> |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| + | You can also add sub-section(s) at will. |
| − | |
| + | ==Labs working on this gene== |
| − | Chromosome = [[:category:Japonica Chromosome 4|Chromosome 4]]|
| + | * State Key Laboratory of Crop Biology, College of Life Sciences, Shandong Agricultural University, Taian, Shandong 271018, PR China |
| − | AP = Chromosome 4:14871430..14876834|
| + | * Biology Department, Millersville University of Pennsylvania, 288 Roddy Hall, 50 E Frederick St, PO Box 1002, Millersville PA, 17551-0302, USA |
| − | CDS = 14871841..14872089,14872213..14872436,14874449..14874566,14874677..14875051,14876348..14876764<br>|
| + | * Department of Chemistry, Fudan University, 220 Handan Road, Shanghai 200433, PR China |
| − | GCID = <gbrowseImage1>
| + | * Institutes of Biomedical Sciences, Fudan University, 130 Dongan Road, Shanghai 200032, PR China |
| − | name=NC_008397:14871430..14876834
| + | * Centre for Forest Biology & Department of Biology, University of Victoria, Victoria BC, V8W 3N5, Canada |
| − | source=RiceChromosome04
| + | ==References== |
| − | preset=GeneLocation
| + | <references> |
| − | </gbrowseImage1>| | + | * <ref name="ref1"> |
| − | GSID = <gbrowseImage2>
| + | Xue T, Wang D, Zhang S, Ehlting J, Ni F, Jakab S, Zheng C, Zhong Y. |
| − | name=NC_008397:14871430..14876834
| + | Genome-wide and expression analysis of protein phosphatase 2C in rice and |
| − | source=RiceChromosome04
| + | Arabidopsis. BMC Genomics. 2008 Nov 20;9:550. doi: 10.1186/1471-2164-9-550. |
| − | preset=GeneLocation
| + | PubMed PMID: 19021904; PubMed Central PMCID: PMC2612031. |
| − | </gbrowseImage2>| | + | </ref> |
| − | CDNA = <cdnaseq>atggtggcggtgaccgggggcaggccccccggcctgcaggatgcgccgggggcaccaccaccagcaccagcagcagaggctgtgccgtcgcgcccgctcgcgcgggacgcgacttacggaggccgcgtgtacggtggcgtaggaggaggaggatgctgcctcgagttcctcgactgcgtgctccgggcgatgggcgtcgccaccccggccgagatcatgccccccgcggacttcaggtgggccgcgcgcccgatgcggcggcgccgccgcgggggctcctcgtcctcctcctcctcgccgcgcgaccgcgagccgagggacggccggatcgccgccaacggcgcctccgctgccgcctcgctctacacgatgcggggcaacaagggcgtcaaccaggacgccatgcttgtctgggagaatttctgttcaaaggaagatacaattttttgtggtgtttttgatggccatggaccatatggccatttggtgtccaagagggtcagagatctcctccctataaagttgagtgcaaatttaggaagagatggacacaaagaaacttcaactaacattgtcacaagcagcatgactgaaggtggtggcaccgaacgcatggatagagatactgaaactcccctgggaacggaggagaatggagactaccccgagatgtttgctgcattaagaacttcattattaagggcattttatgtaatggacagggatcttaagtttcataaaaccattgactctgtgttcagtggtactacagcagtcacagtgatcaagcagggacatgatctcctgattggaaacttgggggattctagagctgtcttgggaactagagatgaatatgaccagttttttgctgtacaattgacagttgacctgaagcctaccattccaagtgaagctgcacgaattagggaacgaagtggcagaatattctctctgccagatgagccagatgttgctcgtgtttggcttccgaagtacaacatgccagggttggccatggcaagagcatttggagacttttgtctaaaggattatggtctaatttctatgcctgatgtttcctaccaccgcatcactgaaaaggatgaatttgttgtgttggcaactgatggggtgtgggatgtactttccaactcagaagttgttagcattgtcagccaagccaagtcagaagcctcagcggcacgatttgttgttgaatcggctcaacgtgcatggagaacacggttccccacatcaaaaattgatgactgcgctgttgtctgcctgttcttgaatacagatgctagaaataaaccccccggttcaggaatcaaagatttggccaatgccatagaactgggtggtggtaatctttcttga</cdnaseq>|
| + | * <ref name="ref2"> |
| − | AA = <aaseq>MVAVTGGRPPGLQDAPGAPPPAPAAEAVPSRPLARDATYGGRVY GGVGGGGCCLEFLDCVLRAMGVATPAEIMPPADFRWAARPMRRRRRGGSSSSSSSPRD REPRDGRIAANGASAAASLYTMRGNKGVNQDAMLVWENFCSKEDTIFCGVFDGHGPYG HLVSKRVRDLLPIKLSANLGRDGHKETSTNIVTSSMTEGGGTERMDRDTETPLGTEEN GDYPEMFAALRTSLLRAFYVMDRDLKFHKTIDSVFSGTTAVTVIKQGHDLLIGNLGDS RAVLGTRDEYDQFFAVQLTVDLKPTIPSEAARIRERSGRIFSLPDEPDVARVWLPKYN MPGLAMARAFGDFCLKDYGLISMPDVSYHRITEKDEFVVLATDGVWDVLSNSEVVSIV SQAKSEASAARFVVESAQRAWRTRFPTSKIDDCAVVCLFLNTDARNKPPGSGIKDLAN AIELGGGNLS</aaseq>|
| + | Umezawa T, Sugiyama N, Mizoguchi M, Hayashi S, Myouga F, Yamaguchi-Shinozaki |
| − | DNA = <dnaseqindica>4746..4994#4399..4622#2269..2386#1784..2158#71..487#caacgacttcttcttcttcctgctctaccttcttggcttttgcctctgttcctcttccaagatttgcgagatggtggcggtgaccgggggcaggccccccggcctgcaggatgcgccgggggcaccaccaccagcaccagcagcagaggctgtgccgtcgcgcccgctcgcgcgggacgcgacttacggaggccgcgtgtacggtggcgtaggaggaggaggatgctgcctcgagttcctcgactgcgtgctccgggcgatgggcgtcgccaccccggccgagatcatgccccccgcggacttcaggtgggccgcgcgcccgatgcggcggcgccgccgcgggggctcctcgtcctcctcctcctcgccgcgcgaccgcgagccgagggacggccggatcgccgccaacggcgcctccgctgccgcctcgctctacacgatgcggggcaacaagggcgtcaaccaggacgccatgcttgtctgggaggtaattatttctttcatcccccattaatccccaatttatttctttcatcccccattaatccccaataacttcttttccatgtgttttctgtgatgtgaatttttttttttactttctttgagatgatgtgtgatgtgaaatttgttcgtacccccggcgaaagagaaacgtgttaattcgtgattgattgattgatgattgaacgtttacatgaaagccccgaactgtctgatatatctgcgatttttttttaatatatgttgttcttgtgtatgcttgagctggcctacacagattgatttttttttcaactttgacataggacatacatgtgtcgtcttggtgtagaatgcatgtttgattcccctacttcttgatattagaataccactttgttctgtctccatatggattgccattggatattgctggtggagactgtttcagatagtaatataatacaacctaattattattctccctatgtagaaaatttgttagcaggggaggtgctccacacgattctcatccttatcctttcttctttttatggatgatcttattcttatctgtttacacattgagtttagctcttgggccatccttttgctgtgtaattaatgtttgcttatcgttctgccccataacacctagtattatccttttgttgtgaggatcctctaccataatgttactaccattacagtcactagtatgtggatcctaccctcccattgcaccacacgtcggtgcctataatgatagtaccattattgtagaggatgtgaacccaccgagccttattgtctccacagtttgctgaagtaccacctggcatgccatgtagcatacaactattgtttttgtgagccagctagtagaatgatagctcctttcatgtacttttgcaatggcaacatatttgctgccctaccaatttctttattgtgataatggtttctgatttttccatatttacatctagtaaccatggaaaaaaatactataaaagccaaataataaattgaaagtacaatttttttgtgatctggtttgttgaaatttttggagatctccatgggaatgcaccatctgatgttcctttctatgaagcctttgtaatattaaaaccatgaatgatattcctttcagctataaattacataaatttatcaattcctacctgataatagtctgtaatcatatgaattatccacttccagttttcctgttctaccattccatttttaggcaccgcaaagttgattttgatggtgttttttgtttgacttccagaatttctgttcaaaggaagatacaattttttgtggtgtttttgatggccatggaccatatggccatttggtgtccaagagggtcagagatctcctccctataaagttgagtgcaaatttaggaagagatggacacaaagaaacttcaactaacattgtcacaagcagcatgactgaaggtggtggcaccgaacgcatggatagagatactgaaactcccctgggaacggaggagaatggagactaccccgagatgtttgctgcattaagaacttcattattaagggcattttatgtaatggacagggatcttaagtttcataaaaccattgactctgtgttcagtggtactacagcagtcacagtgatcaagcaggtaaaaatgtgtcaaaacttaggaatttcatgatgataatgccctttttcttattgttaagctttagttgatattttgaaacctgttttttttcttttctatttatacagggacatgatctcctgattggaaacttgggggattctagagctgtcttgggaactagagatgaatatgaccagttttttgctgtacaattgacagttgacctgaagcctaccattccaagtatgttttgtatttgtgttcctcatctgttcttctaaaagtgtatgatgattgtttttccaagtatgttttgtatttgtgttcctcatctgttcttctaaaagtgtatgatgattgtttcttttttttcctccagtacaattgaaatcgtgggtactgctgattattttgatacaaagaattctagaagcactattgttctgtaacaagttctggtacagagttattgtagtgcgtcaaacacttaaaatagatttatacaccattataactatatatgtttttcatgaaactacttgatataagatgaacatgtggaaatgatattctgaacaagttagaatgtcgggctagtttttttgttaagctggttagagtttgaggtggctgaggtttgcagtcatcctatctgtgctagagtaaaaacttccttgttagaaggtttaggatactgcaaaattacataggaaaaatctctagcttattccctcaaatgtaaggaaaagtttaatatttcagtgcttctacactagatgcatttgtaaattgctgaactgaaaaccaaaaattggtgagccagctgaaatgatttcacaatgtgtcaatataaaatgcatctttcattagtttatttagtttcacagtgcaataagtttatttatctgggatgtgatagttcatagttgtctgtcccacgcctttgatttactgatacctgttgtctgttcgaaactgtgatttattttttctttggaggtatggcaattggcaagatgaaagaaaccttttgatattgcagtaaaaagtatttttatatggtacatgcttcatttatatacctgttattttgtgtgtggaaactcaacatgatttgcactgccattttcctctttcagaatgtcagggctttaacaatttgatgcatccgaagaatttggttcttaaatactgttttaacacttttgggaactaaatattcaaaattcaaattggaaataataaagatcttacaagtaaacctcttttaacattgaaaccacaaggtgacaaatttgatctgccacgtcacatctggtctacaaggactggcttgattagagaatgacagatttttgcatcatgcagcaagtttggcattctatttacatagtgtatcccagtatgatataaaagttcagttcaacatcactccctgaagaactttgtgaactaattagtacagtgcacatgtgttgagcaaaaatagtaatgcaatgtcacaaaaggagagactatgtatgttgatttaaatgaggatagctgagtagaaccttgaacccaggcaaatcagattgacctgaccggatttcacatggcataggaagttgaacatttacctggccaaacttcgcgctaaatataaaaaggacatgcagaaaggttcaaaccaacacctacaggttaacatagacacgaatgtaccaaatgagataacagctctattgttttaaactattaacatcctgcataggatttagttatgttttttttaccgttcaaacccaacatgctggtattttcctgttcaatataatgtggtctgactggtgacccaaggtcaagtaggtgtgactgggtgctttggatctgataacattgccatgcctgccggcgttcggtaactatcatcgaaaagcgtttttaaaggaaattattgggacttcgaaaaaataattgtagttttctacaaataattgttgatataatgaaaatcattagtctttttttctgaaatgatcaattccgatatttttcctgcatagctgagattgttggcacacttcagtatctgttgtaaaggcttgtttctgtgaattattttaaaataataataataatgatagtttatgtttgataagtaatatcaagattttgtgtctacattactaaatggcatgcatgactacaaatgtacacatcggatagttgtttcctgcttttactcccctaaatgaagcaaaacatgttttcaggtgaagctgcacgaattagggaacgaagtggcagaatattctctctgccagatgagccagatgttgctcgtgtttggcttccgaagtacaacatgccagggttggccatggcaagagcatttggagacttttgtctaaaggattatggtctaatttctatgcctgatgtttcctaccaccgcatcactgaaaaggatgaatttgttgtgttggcaactgatggggtgagccattgagcacaaattttacttgaacatatatcttgcttgttcacagaagtaaattttacttttggttggaagattatttttgatatatgattgttttgtttcttttattaactgtaggtgtgggatgtactttccaactcagaagttgttagcattgtcagccaagccaagtcagaagcctcagcggcacgatttgttgttgaatcggctcaacgtgcatggagaacacggttccccacatcaaaaattgatgactgcgctgttgtctgcctgttcttgaatacagatgctagaaataaaccccccggttcaggaatcaaagatttggccaatgccatagaactgggtggtggtaatctttcttgaccatcaaatcaagcactagggctcttaccgatctcgttactgcattggtaacaggtgatgagtggcctgtccttgatggtgtctcgaaaaatctgcgatagcctacttaagttgcaagggaaagcataaaatccgtacttgtctatggattaggataaccattttgcccaagatttgtgcagcttattatacttgcaatgattcttctgcatgggaagacggagccagtttactttgcttgttggggagtggttgcttggtttattctgcactgcaattagtggttctaggacctctgtttcagttattctgtaaagtatcaaatcagcttagtgcaagtctaaagaaattcagtctagtgctgtggtattattacattttgttcataataatagcgaagatttatatgtc</dnaseqindica>|
| + | K, Ishihama Y, Hirayama T, Shinozaki K. Type 2C protein phosphatases directly |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001059000.1 RefSeq:Os04g0321800]|
| + | regulate abscisic acid-activated protein kinases in Arabidopsis. Proc Natl Acad |
| − | }}
| + | Sci U S A. 2009 Oct 13;106(41):17588-93. doi: 10.1073/pnas.0907095106. Epub 2009 |
| − | [[Category:Genes]] | + | Sep 29. PubMed PMID: 19805022; PubMed Central PMCID: PMC2754379. |
| − | [[Category:Japonica mRNA]]
| + | </ref> |
| − | [[Category:Oryza Sativa Japonica Group]] | + | </references> |
| − | [[Category:Japonica Genes]]
| + | ==Structured Information== |
| − | [[Category:Japonica Chromosome 4]] | + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 4]] |
| − | [[Category:Chromosome 4]]
| |
