|
|
| (One intermediate revision by one other user not shown) |
| Line 1: |
Line 1: |
| − | Please input one-sentence summary here.
| + | The rice '''''Os03g0607600''''' was reported as '''''Orysa;CycA3;1''''' in 2006 <ref name="ref1" /> by researchers from China. |
| − | | |
| | ==Annotated Information== | | ==Annotated Information== |
| | + | ===Gene Symbol=== |
| | + | *'''''Os03g0607600''''' '''''<=>''''' '''''Orysa;CycA3;1''''' |
| | ===Function=== | | ===Function=== |
| − | Please input function information here.
| + | * Cyclins, the known activators for activity of CDKs, play crucial roles for cell cycle progression in eukaryotes.<ref name="ref1" /><ref name="ref2" /> |
| − | | + | * In plants, cyclin binding not only activates CDKs by inducing a configuration alteration at the catalytic sites, but also contributes to the subcellular localization and substrate specificity of the complex as well as regulation of protein stability.<ref name="ref1" /><ref name="ref2" /> |
| − | ===Expression=== | |
| − | Please input expression information here.
| |
| − | | |
| | ===Evolution=== | | ===Evolution=== |
| − | Please input evolution information here.
| + | * Phylogenetic analysis indicated that both Arabidopsis and rice shared eight types of cyclins, A-, B-, D-, H-, L-, SDS-, T- and P-type, whereas C- and J18-type cyclins were specific to Arabidopsis, and F-type cyclins, lacking clear homologues in Arabidopsis, were unique to rice.<ref name="ref1" /> |
| − | | + | ===Knowledge extension=== |
| | + | * Similar to animals and yeasts, cell proliferation in plants is mainly controlled by a family of cyclin-dependent kinases (CDKs). The activity of CDKs is directly regulated by binding and activation of cyclins as well as other mechanisms that consist of protein phosphorylation/ dephosphorylation by specific kinases/phosphatases, proteolysis, CDK inhibitor protein (CKI) binding, etc. |
| | + | * Cyclins were initially discovered in marine inverte-brates as proteins that accumulated at specific time points of the cell cycle and were subsequently degraded quickly.<ref name="ref1" /> |
| | You can also add sub-section(s) at will. | | You can also add sub-section(s) at will. |
| − |
| |
| | ==Labs working on this gene== | | ==Labs working on this gene== |
| − | Please input related labs here.
| + | * Rice Functional Genomics, Joint Laboratory of Temasek Life Sciences Laboratory of Singapore and Institute of Genetics and Developmental Biology |
| − | | + | * Institute of Genetics and Developmental Biology, The Chinese Academy of Sciences, 100101 Beijing, China |
| | + | * Rice Functional Genomics Group, Temasek Life Science Laboratory, 1 Research Link, The National University of Singapore, 117604 Singapore, Singapore |
| | ==References== | | ==References== |
| − | Please input cited references here.
| + | <references> |
| | + | * <ref name="ref1"> |
| | + | La H, Li J, Ji Z, Cheng Y, Li X, Jiang S, Venkatesh PN, Ramachandran S. |
| | + | Genome-wide analysis of cyclin family in rice (Oryza Sativa L.). Mol Genet |
| | + | Genomics. 2006 Apr;275(4):374-86. Epub 2006 Jan 25. PubMed PMID: 16435118. |
| | + | </ref> |
| | + | * <ref name="ref2"> |
| | + | Wang G, Kong H, Sun Y, Zhang X, Zhang W, Altman N, DePamphilis CW, Ma H. |
| | + | Genome-wide analysis of the cyclin family in Arabidopsis and comparative |
| | + | phylogenetic analysis of plant cyclin-like proteins. Plant Physiol. 2004 |
| | + | Jun;135(2):1084-99. PubMed PMID: 15208425; PubMed Central PMCID: PMC514142. |
| | + | </ref> |
| | + | </references> |
| | | | |
| | ==Structured Information== | | ==Structured Information== |
| − | {{JaponicaGene|
| + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 3]] |
| − | GeneName = Os03g0607600|
| |
| − | Description = Similar to Cyclin|
| |
| − | Version = NM_001057175.2 GI:297601299 GeneID:4333422|
| |
| − | Length = 5418 bp|
| |
| − | Definition = Oryza sativa Japonica Group Os03g0607600, complete gene.|
| |
| − | Source = Oryza sativa Japonica Group
| |
| − | | |
| − | ORGANISM Oryza sativa Japonica Group
| |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| |
| − | |
| |
| − | Chromosome = [[:category:Japonica Chromosome 3|Chromosome 3]]|
| |
| − | AP = Chromosome 3:23605718..23611135|
| |
| − | CDS = 23605718..23606062,23606160..23606392,23606486..23606561,23606685..23606761,23606861..23606894<br>,23607001..23607150,23607237..23607371,23607458..23607525,23611066..23611135<br>|
| |
| − | GCID = <gbrowseImage1>
| |
| − | name=NC_008396:23605718..23611135
| |
| − | source=RiceChromosome03
| |
| − | preset=GeneLocation
| |
| − | </gbrowseImage1>|
| |
| − | GSID = <gbrowseImage2>
| |
| − | name=NC_008396:23605718..23611135
| |
| − | source=RiceChromosome03
| |
| − | preset=GeneLocation
| |
| − | </gbrowseImage2>|
| |
| − | CDNA = <cdnaseq>atggccggcaaggagaacgccgcggcggcgcagccccgcctcacccgcgccgccgccaagcgcgcggccgccgtcaccgccgtggccgtcgccgccaagcgcaagcgcgtcgcgctcagcgagctccccacgctgtccaacaacaacgccgtggtgctcaagccgcagccggcgcccaggggcggcaagagggccgcctcccacgccgccgagcccaagaagccagctccgccgccggcgccggcggtggtggtcgtggtcgacgacgacgaggagggggagggggatccgcagctctgcgcgccctacgcctccgacatcaactcctacctccgctccatggaggtgcaagcgaagcggcggccggcggcggactacatcgagacggtgcaggtggacgtgacggccaacatgcgaggcatcctggtcgactggctcgtcgaggtcgccgaggagtacaagctcgtctccgacacgctctacctcaccgtctcctacatcgaccgcttcctctccgccaaatccatcaaccgccagaagctgcagctcctcggcgtctccgccatgctcatcgcctcgaagtatgaggagatcagccccccaaatgtggaggatttctgctatataaccgacaatacctatatgaaacaggaggttgtcaagatggagcgcgatatactgaatgttctcaagtttgagatgggcaatcctacaaccaagacgttcctgaggatgttcatcagatctagccaagaagacgataagtatcctagccttcccttggagttcatgtgtagctatcttgccgagctgagcctgctggagtacggctgtgttcggctcttgccatccgttgttgcagcctcagtggtgtttgttgcaaggctaacccttgattcagacaccaatccttggagcaagaagttgcaagaggtgaccggctacagggcatctgagttgaaggattgcattacctgcatacatgacttgcagctaaacaggaaagggtcatctctaatggctatccgggacaagtacaagcaacataggttcaagggcgtatcaacattgttaccccctgttgagatccctgcatcatacttcgaagacctaaacgaaaagaatagaagaactgaacagcaaaaccttcagaagttcagaggtgtggtatctgaagaggcagactaa</cdnaseq>|
| |
| − | AA = <aaseq>MAGKENAAAAQPRLTRAAAKRAAAVTAVAVAAKRKRVALSELPT LSNNNAVVLKPQPAPRGGKRAASHAAEPKKPAPPPAPAVVVVVDDDEEGEGDPQLCAP YASDINSYLRSMEVQAKRRPAADYIETVQVDVTANMRGILVDWLVEVAEEYKLVSDTL YLTVSYIDRFLSAKSINRQKLQLLGVSAMLIASKYEEISPPNVEDFCYITDNTYMKQE VVKMERDILNVLKFEMGNPTTKTFLRMFIRSSQEDDKYPSLPLEFMCSYLAELSLLEY GCVRLLPSVVAASVVFVARLTLDSDTNPWSKKLQEVTGYRASELKDCITCIHDLQLNR KGSSLMAIRDKYKQHRFKGVSTLLPPVEIPASYFEDLNEKNRRTEQQNLQKFRGVVSE EAD</aaseq>|
| |
| − | DNA = <dnaseqindica>1..345#443..675#769..844#968..1044#1144..1177#1284..1433#1520..1654#1741..1808#5349..5418#atggccggcaaggagaacgccgcggcggcgcagccccgcctcacccgcgccgccgccaagcgcgcggccgccgtcaccgccgtggccgtcgccgccaagcgcaagcgcgtcgcgctcagcgagctccccacgctgtccaacaacaacgccgtggtgctcaagccgcagccggcgcccaggggcggcaagagggccgcctcccacgccgccgagcccaagaagccagctccgccgccggcgccggcggtggtggtcgtggtcgacgacgacgaggagggggagggggatccgcagctctgcgcgccctacgcctccgacatcaactcctacctccgctccatggaggtacgccacatctctcgtccatgtcgccctccgcttccttcgcccgccgtcgccatttccaagatctaacgaggcgccgtcgtgcgtgcgtgcgcaggtgcaagcgaagcggcggccggcggcggactacatcgagacggtgcaggtggacgtgacggccaacatgcgaggcatcctggtcgactggctcgtcgaggtcgccgaggagtacaagctcgtctccgacacgctctacctcaccgtctcctacatcgaccgcttcctctccgccaaatccatcaaccgccagaagctgcagctcctcggcgtctccgccatgctcatcgcctcgtaagcgccgcccgtttcatccccgcccctcgctgagatttacccatcagttcaagaatcgatatttacttcggattggtttggtggatccaggaagtatgaggagatcagccccccaaatgtggaggatttctgctatataaccgacaatacctatatgaaacaggaggtgggtactgatctgatctctctttgttcatgtgcctgagtacgatttggtttcagatcttgcaagtgtttgatgctaaattgctgattgagtcgtgttcttgttgcttgtgtcgatgcgtaggttgtcaagatggagcgcgatatactgaatgttctcaagtttgagatgggcaatcctacaaccaagacgttcctgaggtaaaaccacaaaccaagttaatctgaaatgtttcgtgttaatcaccatggatctgtatctgacctttttctctctgtttttccctactctgttttcaggatgttcatcagatctagccaagaagacgataaggtagcaatccacaaatctcatcttctatactccttgttaaattacttgattactctgtaggagtacatgtttgttgatctcaaagtatttgtgattcttgctgcagtatcctagccttcccttggagttcatgtgtagctatcttgccgagctgagcctgctggagtacggctgtgttcggctcttgccatccgttgttgcagcctcagtggtgtttgttgcaaggctaacccttgattcagacaccaatccttgggtatgcaaacaattccattgcatccaaagctttcattgaaccatattttgtgaaatggcaattcatctgtttctgtgtggttgcagagcaagaagttgcaagaggtgaccggctacagggcatctgagttgaaggattgcattacctgcatacatgacttgcagctaaacaggaaagggtcatctctaatggctatccgggacaagtacaagcaacatagggtaagcttgaatcttttacaattggagaatcttcttgacatcttattcatttagtactaatctaattgcgcattcatctctaacagttcaagggcgtatcaacattgttaccccctgttgagatccctgcatcatacttcgaagacctaaacgagtagatgttactggatgatgatgtggtgagattaagattgagctttcctcaagatagatccatggtgactgaagttgaaagggggcttgtcagtacactcagtacaagagatgtcctaccttggatgctggactgtcaaagcttagctaggagctcttagggttgatttattaagctgaagcttagtacacttcagtaagatgctaggcatgtggagagttgtacctctgtatcatattcatacattacaacctgatgccttaatttttgggccagaactgcaatacttgatttgctagtcctcatgccattttttctttgctattgattatttgattcttttattcatatagcttggctgttagcctgttactactatagttaagatgccttttagtaggcagttccacattagaggtcagaattacttatctagctgcaactctaaacatcttagtatgcaccaagtgatgtgctcttcacattacatgtatcttcatatgactggtgatcatttctagcacaatgtttttgccagtaagaacatctgaattcatgagggttctcagctattttcatagcggaattttgcagatcatttattaacttgtgcatcacttgaggtggtttgctgcaatgcattgaatcttctaatatgctggaccaatttttgtctgtgccataacctgagtttatagcccagaactaagatcatggtgctgatttttgggtgaagttttgttactcagtacaaaacatgtggtccggataatgtcttgctaatgattttcccatagtttgctcatgttcttacttggtacttattacagtgactccatgttgagaacctccatttctacagcgtgttcagtcaagttttagacactctggagtccggtctatactgaaaacatgttatttttcaagatgatttcagcttaccacttggcatagagttaacaaagttctggcttctgagcctgtctttcaccagtaggtgttaggagtcctttttgtccatcctacttcagttgaacaactaaaagattaccatgtaaaacaataatgagtttctattttagatactgaactcagttcaacgactcaaatgagttcaggtatgtaccataagtctttcaaagcataaggtttcccttagtccttgttcggttaatccctctcccaggagattaacaagcccttaatgaggtaaagaaaaggggaaaattttagtttcttcagtggctgacattgttttgtgctaatgagaaatgagtttgatagtatttcagaaacaaagaaggtaacatgccaaagaaaattggcacacaggtcaattctttctctttttgtttccctcagaataaaaacactttgaagaatatttctcctaggagattaaccgaacaagcccttaacgaggtaaagaaaaggggaacattttagtttcttcagcggctgacactgctttgtgctaatgagaaataagtttaattgctttttagaaacaaagaaggtaacatgccaatcaaaaattggtatacaggcagcttttcaattatctcgttttgtttccctcagaataaaacacttcgaagaacatttcttgaccctgccttgatcacttcaaaagctttgcacatactccatccgtctcaaaatatatgacattgttaattttttgcataacgtttgaccattcgccttattaaaaagataatataaatgatatgcgaaaggtcaatggtgtcgtacattttgagaaggagggagtagatcacaagtccaaaactactttgcgattatgttatttgcaggcactgatcaagtgattatataaatcatgtgaatagttagagttctagggctaaagtagaccctaaaacagaattggtttctgttgagggaaaaggagaacttctccacaagagactgcttatttgtttgaaaataaaagtgaggaaccaaagtataacagaaactaaactattctctgctagtataacttccataccaagacacttcttatttgtttcttttcttcaatcctaattcaaaagtacaagcctacaaggcgtgcatgaagataaaatgtttttttttgaaaaaaatgaagatatgatgcatgtttctctcttttagcatcagttatctttcctatatcctctatttatgggcgattgagtacacgctcctcacttttattttcaaagttttaaaactactgatacggtgataccacattcatttccataattgtctcgatccccatgcaagtgaaacggcaaggcatcttttcaaaggcagctaaagagtagcacaacctggtagaatgttcctccaaggtttcaattatgcccttgtttagaaccaaactttttcttcaaatttccaacttttccatcacatcaaaattttcctacacacaaatttccaacttttccgtcacatcgtttcaatttcaaccaaacttccaattctggcgtgaactaaacacaacctatatcttcataaaaaaacactgattgtacctactatgcatctatgattaattaaggctgtgtttagttggatccaaagtttagattttggttgaaattggaaatgatgtgactgaaaagttatgtgtgtatgacaggttgatgtgatggaaaatgactgaagtttagatccaaactttggatctaaagacagcctaagtacaactgttttagaaaaaaagaaatggagaaatcactttacaatttctcttgaagaacaaggtgggcttttattcccaaccttgccaggacccggttttgctacagcctgtagtgagaccgcaacttaaacagttaacagtcccgctagggctatcagatctgaatccaagggctcagattgacccaagtactaggtttactgtatcagatatgctactatcttgggagatgccaatacttgtggaacaccaagctaaaattagtgaaccaggtatgccttttcttttgctgatatgtctccatcttatcctattgctgagcctgagtagtggaattgcaactgcaacttgatgagcgggaacatctgggaagagttctgtactgtccaattgtccatgtcaggcttgcattccccggaccaaagtcagattttaaaggccataatagtgaagcacaactagcatagcaccaaactctgctactgttatcgaccagttctttgattccgacatgcaattttctgctaatattaggtttgtccccttttttttttgttctctcttttgatatccttttcttcataggtagtgcaagattttgaactggtttaaaaaaaaaaattctttctttcctagtactactgcatatttgtgctctacttatgtgccttttaagaagaaaaagctgcacatacgacaccaccattaggcagtgcagattgcagaattacatcctttattgtcatatcctctgttatgacataatttcaacatgattatcctggatttcaaactaagaacatccgcagagatgtacttgctgaatttcacatctgaagaaagaatagaagaactgaacagcaaaaccttcagaagttcagaggtgtggtatctgaagaggcagactaa</dnaseqindica>|
| |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001057175.2 RefSeq:Os03g0607600]|
| |
| − | }}
| |
| − | [[Category:Genes]] | |
| − | [[Category:Japonica mRNA]]
| |
| − | [[Category:Oryza Sativa Japonica Group]] | |
| − | [[Category:Japonica Genes]] | |
| − | [[Category:Japonica Chromosome 3]]
| |
| − | [[Category:Chromosome 3]]
| |
