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| − | {{JaponicaGene|
| + | The rice '''''Os12g0485400''''' was reported as '''''Orysa;CycT1;4''''' in 2006 <ref name="ref1" /> by researchers from China. |
| − | GeneName = Os12g0485400|
| + | ==Annotated Information== |
| − | Description = Similar to Cyclin T1 (Fragment)|
| + | ===Gene Symbol=== |
| − | Version = NM_001073313.2 GI:297613182 GeneID:4352229|
| + | *'''''Os12g0485400''''' '''''<=>''''' '''''Orysa;CycT1;4''''' |
| − | Length = 8505 bp|
| + | ===Function=== |
| − | Definition = Oryza sativa Japonica Group Os12g0485400, complete gene.|
| + | * Cyclins, the known activators for activity of CDKs, play crucial roles for cell cycle progression in eukaryotes.<ref name="ref1" /><ref name="ref2" /> |
| − | Source = Oryza sativa Japonica Group
| + | * In plants, cyclin binding not only activates CDKs by inducing a configuration alteration at the catalytic sites, but also contributes to the subcellular localization and substrate specificity of the complex as well as regulation of protein stability.<ref name="ref1" /><ref name="ref2" /> |
| | + | ===Evolution=== |
| | + | * Phylogenetic analysis indicated that both Arabidopsis and rice shared eight types of cyclins, A-, B-, D-, H-, L-, SDS-, T- and P-type, whereas C- and J18-type cyclins were specific to Arabidopsis, and F-type cyclins, lacking clear homologues in Arabidopsis, were unique to rice.<ref name="ref1" /> |
| | + | ===Knowledge extension=== |
| | + | * Similar to animals and yeasts, cell proliferation in plants is mainly controlled by a family of cyclin-dependent kinases (CDKs). The activity of CDKs is directly regulated by binding and activation of cyclins as well as other mechanisms that consist of protein phosphorylation/ dephosphorylation by specific kinases/phosphatases, proteolysis, CDK inhibitor protein (CKI) binding, etc. |
| | + | * Cyclins were initially discovered in marine inverte-brates as proteins that accumulated at specific time points of the cell cycle and were subsequently degraded quickly.<ref name="ref1" /> |
| | + | You can also add sub-section(s) at will. |
| | + | ==Labs working on this gene== |
| | + | * Rice Functional Genomics, Joint Laboratory of Temasek Life Sciences Laboratory of Singapore and Institute of Genetics and Developmental Biology |
| | + | * Institute of Genetics and Developmental Biology, The Chinese Academy of Sciences, 100101 Beijing, China |
| | + | * Rice Functional Genomics Group, Temasek Life Science Laboratory, 1 Research Link, The National University of Singapore, 117604 Singapore, Singapore |
| | + | ==References== |
| | + | <references> |
| | + | * <ref name="ref1"> |
| | + | La H, Li J, Ji Z, Cheng Y, Li X, Jiang S, Venkatesh PN, Ramachandran S. |
| | + | Genome-wide analysis of cyclin family in rice (Oryza Sativa L.). Mol Genet |
| | + | Genomics. 2006 Apr;275(4):374-86. Epub 2006 Jan 25. PubMed PMID: 16435118. |
| | + | </ref> |
| | + | * <ref name="ref2"> |
| | + | Wang G, Kong H, Sun Y, Zhang X, Zhang W, Altman N, DePamphilis CW, Ma H. |
| | + | Genome-wide analysis of the cyclin family in Arabidopsis and comparative |
| | + | phylogenetic analysis of plant cyclin-like proteins. Plant Physiol. 2004 |
| | + | Jun;135(2):1084-99. PubMed PMID: 15208425; PubMed Central PMCID: PMC514142. |
| | + | </ref> |
| | + | </references> |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| + | ==Structured Information== |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 12]] |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
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| − | |
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| − | Chromosome = [[:category:Japonica Chromosome 12|Chromosome 12]]|
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| − | AP = Chromosome 12:18100511..18109015|
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| − | CDS = 18101959..18102194,18102726..18102807,18104449..18104583,18105244..18105419,18105503..18105654<br>,18107579..18108429|
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| − | GCID = <gbrowseImage1>
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| − | name=NC_008405:18100511..18109015
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| − | source=RiceChromosome12
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| − | preset=GeneLocation
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| − | </gbrowseImage1>|
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| − | GSID = <gbrowseImage2>
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| − | name=NC_008405:18100511..18109015
| |
| − | source=RiceChromosome12
| |
| − | preset=GeneLocation
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| − | </gbrowseImage2>|
| |
| − | CDNA = <cdnaseq>atggctatgatgccaagtgattcatcacatcatggaattgtagaaaatagcccatacagaactacccagggcaggaatgaggagactggtgaacttggtgcttcatggtatttcagtagaaaggaaatagaagagaattctccatccaggagggatggcattgatttgaagaaagagtcttacctccgaaaatcatattgtacttttctacaagatttgggcatgaggcttaaagtgccacaagtcactattgctacagctattgtgttctgtcaccgtttttaccttcgtcagtcccatgcaaaaaatgatagacgaacaattgccacagtttgcatgttcttggctggaaaagttgaagagacgcctaggcctttgaaagatgttattctggtttcttatgagattattcataaaaaggatcctgctgctggtcagagaatcaagcagaaggaagtatatgatcaacaaaaagaacttattttacttgcggagcgagttgtacttgcaactcttgggtttgatttgaatgtgcatcatccatacaagcctttggttgaagcaataagaaaatttaaagttgctcaaaatgcgcttgctcaggttgcatggaattttgtcaatgatgggctgcgtacttcgctttgcctgcagttcaagcctcatcatattgcagcaggtgctatctttttggctgctaaatttctcaaagtgaagcttccatctgatggtgagaaggtttggtggcaggagtttgatgtgactccaagacagctggaagaagttagcaatcaaatgttggagctgtatgagcaaaactgtgcagcacaggcacaaccgtcccatggaaatgaagctgaagggagctctgctagtgttcctaatcagcgagtctctgtaaaatccgaggaaacacctcttcctcaccagtcgaaacagtcaagttcacagcattcaacaggtgctccaagtcatcatggtgtcgagcactcaaatctagaaaagcaaactgtggaccagaaaatgcttcaaaatgacaatggtgaccatgggagcaacaaaacaagaagcaatcagagtggaagtagagttgattttggtgccaacgatggtttacatcatgacaaacagtccatgacagaaaataagaatcttccatcacatggcaactccagtgaaatcagagatgtcaaccgcaatggcaatgatggtacgaatgtgacatccttgatggtaaataaaattgacaaggataaggtgaaagcacaaatggaaaagcaaaggaaactgaaaggtgatgttgctaggaaggtagaggtaatagatgatgatgatgatcttgagaggcaactagaacatgacattgaattggctgttgaggataataagataaagcaggagaggaagcagagttcccctcatgttatgcatcggggggatcatagaaatgctgatcaagttacaggcaatgggcaccttggcaagcagaatacaccagagactgctcaagatgccccaatggacgacattaaagaacagcgcaattcccatggctcaaagcaccatgacagtcatgatactgctcatgagcgaggtgaaagagactataaaaggcctcggcctgaaggttag</cdnaseq>|
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| − | AA = <aaseq>MAMMPSDSSHHGIVENSPYRTTQGRNEETGELGASWYFSRKEIE ENSPSRRDGIDLKKESYLRKSYCTFLQDLGMRLKVPQVTIATAIVFCHRFYLRQSHAK NDRRTIATVCMFLAGKVEETPRPLKDVILVSYEIIHKKDPAAGQRIKQKEVYDQQKEL ILLAERVVLATLGFDLNVHHPYKPLVEAIRKFKVAQNALAQVAWNFVNDGLRTSLCLQ FKPHHIAAGAIFLAAKFLKVKLPSDGEKVWWQEFDVTPRQLEEVSNQMLELYEQNCAA QAQPSHGNEAEGSSASVPNQRVSVKSEETPLPHQSKQSSSQHSTGAPSHHGVEHSNLE KQTVDQKMLQNDNGDHGSNKTRSNQSGSRVDFGANDGLHHDKQSMTENKNLPSHGNSS EIRDVNRNGNDGTNVTSLMVNKIDKDKVKAQMEKQRKLKGDVARKVEVIDDDDDLERQ LEHDIELAVEDNKIKQERKQSSPHVMHRGDHRNADQVTGNGHLGKQNTPETAQDAPMD DIKEQRNSHGSKHHDSHDTAHERGERDYKRPRPEG</aaseq>|
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| − | DNA = <dnaseqindica>1449..1684#2216..2297#3939..4073#4734..4909#4993..5144#7069..7919#atccgcgagaagcacccgaaccgccgccgccgcccctcctcctctcttcccccttccgccctctcagccctcgccgacgacgaggaggagaaggcggcggccgcacgcacgccgcgcgagaggggcaagcaaagctcggtggtggtggtggggggggggggggcggaccgcgtcgcgcccccggcgcctcggcgccatccgccccgccgcggggggcctcaggcggaggaggaggaggaggaggcgaaaccctagcgcggggggagacgaggtacgcgtcgatgcctctctgtttcgattctcgcgtctcgtgatggcgggtctcattcgcgggggggggaggggaatcgaaaccctaggtgcggcgtttttgccatttttcgaaagctgtgcggttcaatgaattccgaaaccctaggtgtcgcgattggtgccatttcggctcgatatatggtcttcgtgcgggggtatgggggattcaaggtgtgatcttgcgggatgtattgggctcaaaatcccctttttaggaaaaaagtagggtcgaatcgcggatctgcgtaaataggaaaaaacgtcaacaaaacgggtggacgacgtcacccacgctatgggggggttccccctacccaggctgcgggtcaaaataaatccatgattttttgccatgcccaaaaagttttttagggggtcatttttttgcaaaatcttgaatcccccctttgtgtatgttgtaagactgtaattaggtttcgtttaaaaaaccctaattggatgggcaattttaggagatgtatgatgcattttgtgggtgatgaagtatcactgaggatagggcttcgttagcctgcaaacataatataaatcaataatcgatataaatctttctgtttaaccaggcgaccacccttgattggtgtatcaggaccaatacgtacatagacattggaattgatctaaagtgatttatgcttttgaatgaggtttgcatcttagggaagtaacgagggttgctgattaaattttacttgtctagttctatgctttagaaactttagacagcataatcccgataatgttataaaccataatctgtattagttccctgcattcatagttcgacaacgtgtactactagacgtattcttggctttttgccattttctctggtagtggggtattaatgggtctagtgacttgtaaagcatgattatcatcctattgctctttctatttcgaacttacagattggaatgagcataaagccatatgttagtactttagaattaatcattacttgtactgtatcttattatcctgtcctttgtccttagtaaatttataaacacttactgtatctttttcgttcagtgctgctcaggccactttcaatagataaagaagtaatatcttcatcagtcctttctcaatatagttgagagcgagtttacatggctatgatgccaagtgattcatcacatcatggaattgtagaaaatagcccatacagaactacccagggcaggaatgaggagactggtgaacttggtgcttcatggtatttcagtagaaaggaaatagaagagaattctccatccaggagggatggcattgatttgaagaaagagtcttacctccgaaaatcatattgtacttttctacaagatttgggcatgaggcttaaagtgtaagatcatagttgatttaacttatatttttcattgttgatgttaacttgttcctttcaatcattattatgatcttcaattaccatgatgcatgcatttctactttattattttcaaaggatgctaaacttaactgaagtatatctattgtggttgtaatttgtaagccgttagcttatttttggtctgatttgttctaataagcttgatcaatctatttacccctttgtttggacatccatgtgagatccatttatgtgtatataatcaacatagaagcagaagatgtttttttatctctttcaaatttatgaggacctggtaattgtttggtttcgacttgttgaatgtgtatattatcaaaatatggaagcagaatgtgtgctttatatcattgattttagcccttgattgccatgcaaattgttctggtcatgtgaatactacatattgtttagtttttcttatttatggagtataatatcattctgtctacttccaatcaatgactgccttttgttctgtggtaggccacaagtcactattgctacagctattgtgttctgtcaccgtttttaccttcgtcagtcccatgcaaaaaatgatagacgagtaagtactttcaatgcttggttcgttcctccttttgtggttttatggatggctatttctcttttagttagtagcctttatattacaacgacatatttgcattttttatctagttctaaaacatgtttaacaagaaaatggtttccttctgtatggatagtaatgtaggagcgatgaaaactgcaatattttatagatatagaagttgtgtcgcggggaagtacatactttgacatttgcattttacgatcacaagagctatggggacttcattacttaatttatagggactgaagttgttgttattagtgcagttaaagcgaaaagtacactaagacgcaatagtattatattgcctcaggtacaaagcattaaaaagtgtgtgccttagacacatggagcacaatataaaaacataaatgtctacccctaagtaggaagctccatgcctgattctggcagctgaccaaaaacaaactaatagttaagaaatatataacggataaggtccgagactagcaaactgcaattcaagtagtttttggctgctataatatacatagcgtgccacattaataaagttctgctaagaagttaataacctaatccttcaacaaaagatgcccaaaatatgagtcctgaatcaagctggcagaaaaaaagaaggcagcaggcgtctgagcgccttgttcttaagcctaaagttggctcaccaacggcattgtgctttaagctactctaggtgctttagttgcgaccctgcgcttcgcttgcttttgcatctaggcgagcgccttttgtgcttttgactgcactgtttgttatgagataaaagtaccacatatatttgatagttgttggtggaggttacggattaatgatccagattaaagttgaccagtggttgccccattatcaatcttctatgtagttaggagttaggggagcattggtgagtggtgtgaaaaagttgtccctactgtaacattggaaaatttttacatttcccaaggttttgctataaaatgaacgagagaaccaatgtgaatggaaaccaagcaaggatatgataccgctaaggcggtaaagcatttataaagctaccacgggattctcaaacggaacacctcaatcttctgcgctatctgtgtgcagaccagctggcgaatcttgaatgcttttagccatcacatgtataatacaacactttcatatttgatttaagctaatacacatgaaagcattgaaaatcacatgaaaaagtgggagatgcttccggataatgccttaaatgttggaattaactggaacaaatataatgtagaacttgctatgtctatagtattgtagtgtcaaaagctcagagctataaccagaaagagaaatgaatacaaattcttactgccaatggaaagagacagtattgtagtgcatgtgagtttgttttacttgtcctgagattgtttagtattttgtaccatgtatcaaacgaaataattttctattctcattttccttgcattctcgtgtcgcaaacttttgattgcatgatcttaattttactcctatgttaagtgttgtcctatagatctgtacctgtttgaagagagaacttataatttgtactgaccgttcttacagacaattgccacagtttgcatgttcttggctggaaaagttgaagagacgcctaggcctttgaaagatgttattctggtttcttatgagattattcataaaaaggatcctgctgctggtcagagaatcaagcagaaggtaacaataaactagatgcttcttttgctatatactttaattttatgaatttgttttctttcttgcaaaaaaaaatccctctgatctgcatttggcagcaggaccatccgttttgcctgatatttagttttctttgatgttctaagtattttgactgttcaatttcctggtaaacattactggctatattggcaactattacccatcgcctttttgatttttttgcggcatttttgaatcctagaatttatctaatggaagaatcaagaatgtgaggttaaattacatgtaaacaaatttcaacatctgacagttattcattgtattatatcatgttggttgtgattaagttaaccatcaaggcatctgcctgtgataattacttccgtcctggttttactgcgtgcatatgtaaaaaaaaatggaagtaaatagtcaccattgtatgcttctattctcagctaatgcttcttgaaaacaatccaaggctagcatatagggttatagcgtttatgactcctgatagtagtataggctttttccctgcacgtgatatttcctgctttgggagattgtctggacggagttatttttcttcctgcaccaggcaatgatttccactgggatgctttaatgaatggtctgtaattgtctctgcaggaagtatatgatcaacaaaaagaacttattttacttgcggagcgagttgtacttgcaactcttgggtttgatttgaatgtgcatcatccatacaagcctttggttgaagcaataagaaaatttaaagttgctcaaaatgcgcttgctcaggttgcatggaattttgtcaatgatgggtatgctattgatacccttattatctttagagatatcactcaatcatgtatataacacgttaaaaagggcgtatattgtacaggctgcgtacttcgctttgcctgcagttcaagcctcatcatattgcagcaggtgctatctttttggctgctaaatttctcaaagtgaagcttccatctgatggtgagaaggtttggtggcaggagtttgatgtgactccaagacagctggaaggttggtgcctagataatgttgtgttctatacttctatctggtccatatgacggtttacaacaatctcctgagttttaaaccgcatattttttttaacgagcatgttgactaggttgctttggtaccttactgctggctgctgaagcagttaatgttgcgctgcagcttatttaaattttgtatactagttgaagcaatggagaatctgttctgatgcattagtttattactctattcatcaacagatttcattcctggattttgcacaaaaattaatatacatctagaaaagaacacattgttccttaggtttgttatggatttagaatggtctattttattagtccatgcctccatagtagtactaggaaatagaaattaatcatcagaagagcagggaatataagtctaaagtattcagcatcatcttgcaatcatcagatgctatgtttggtcatggtttgtagaaatacttttcacactacgcggcttcctttttgataatcctctgtttcagaaaagtacatatttgtattcaacttgtgcagattttcgattttaaatttcacatcgtcagctgtcctttttctaaaaggtttacaccccgttgttttctacattaactttctgcaacattctggggggatgggttaagactgacataccgtcatacacaaggtttttcaaagaaaggcaaggacaaaaaagttcacaagaatttggccaggtaccaaaaaatattaattttttctgggtaccaagtagtaataccacaacttgggctaaaacttcttacctataccatttcatcatttttgcccttctttcttctcccctcttcatcccctcactgattctgggaatgatgtacctggagcaaagcatgtggcctgctgaggctgatgctgtctgaggtctacactgtggcctgcagcactgaggtgctggtttccatcctgacctctggcacgaccatcttggcattgctctctgtgtgatgccatgctcagatcctcgcctctttactgatctgctatgccctgctttgaacagataattggttgcttgcgaaaggcttgatttacgtagtggattaattcgtagtgggtgttggtggaatagtaattgtgcctttcattagcatgttcttgttttcttattttctgctgtattgattgaaatttgggtcataatgtggagcttatgtagtagtctttctaatgaattactagcatacagattctcagatctttgttattactatttgtatgttctaccttctaaagggagctattaaaaatctctccatgggtatgtgtgatttcataaatagttcacgtggtttcataagcacacgctttcaattgcaatctgtctaatcaaagcatctggttggttaggatctgagggtttatgtgctaattgtgttcgatctgatggctagaatttttggggtcagttggcataagcactgcattaggggtcaattttagagttcacaagggtttatcttcataccttggcctgctgatgtgcaatggttaactgaactggctgaatgcacttatttttcttagtggggacctgccaaactatatattaagtataaacattacaatgaaagctgaccaggatacacagaaattctggaaaagcctaattgtggccagttttcgaaaatttgatagggtccagaaaccggtttcttttggtcgtgtcatcttgcgcaacctgatttgtgcttgctaagttgctatgagcaatccaaatttacattgactaggtgctgtatattttaagtctttttattcttgttgcactagttatacttatttaactttttgataatacaatttgatcatgacacattcctttctgggttcttgttaaatcagataataatgcatgtctcccttgattgcagaagttagcaatcaaatgttggagctgtatgagcaaaactgtgcagcacaggcacaaccgtcccatggaaatgaagctgaagggagctctgctagtgttcctaatcagcgagtctctgtaaaatccgaggaaacacctcttcctcaccagtcgaaacagtcaagttcacagcattcaacaggtgctccaagtcatcatggtgtcgagcactcaaatctagaaaagcaaactgtggaccagaaaatgcttcaaaatgacaatggtgaccatgggagcaacaaaacaagaagcaatcagagtggaagtagagttgattttggtgccaacgatggtttacatcatgacaaacagtccatgacagaaaataagaatcttccatcacatggcaactccagtgaaatcagagatgtcaaccgcaatggcaatgatggtacgaatgtgacatccttgatggtaaataaaattgacaaggataaggtgaaagcacaaatggaaaagcaaaggaaactgaaaggtgatgttgctaggaaggtagaggtaatagatgatgatgatgatcttgagaggcaactagaacatgacattgaattggctgttgaggataataagataaagcaggagaggaagcagagttcccctcatgttatgcatcggggggatcatagaaatgctgatcaagttacaggcaatgggcaccttggcaagcagaatacaccagagactgctcaagatgccccaatggacgacattaaagaacagcgcaattcccatggctcaaagcaccatgacagtcatgatactgctcatgagcgaggtgaaagagactataaaaggcctcggcctgaaggttagttttgatgacattgagagatcatttgtgattttgagcgatgtgctggaaagtgagcacttggcttggaacttaacatattaagatcagcatatgttactcgaacatatgcattttctgcctgagatcgctgccatgtgacatcaaagtgggcatatgctgtggagtgacaggcataaggatgctcatgtttttacccagctgtatacaacctcgcaactgactgcaacgggtgttttgccctcgatttgtactgggggacagtttgggaagaaactcatgatgataaaatctgtgtttcaacaagtattggagtaaatacactggagaaagcctctagttccatttgcgttgagttctttctttctttttttgtttttaggcgaattttcagcgacgttccgtagattagctagggttcaactttgtccactagatgaattgaatatgcttttgcaggctgtctgccccttaactagctcgagaagttggcattggttcataactttgaaatattttagcttgttcaggtggcggtttcttcccaacattgaacctggattctcgaatggaatggcgttcaaatgt</dnaseqindica>|
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| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001073313.2 RefSeq:Os12g0485400]|
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| − | }}
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| − | [[Category:Genes]] | |
| − | [[Category:Japonica mRNA]]
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| − | [[Category:Oryza Sativa Japonica Group]] | |
| − | [[Category:Japonica Genes]] | |
| − | [[Category:Japonica Chromosome 12]]
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| − | [[Category:Chromosome 12]]
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