Difference between revisions of "Os02g0558100"

From RiceWiki
Jump to: navigation, search
(Created page with "{{JaponicaGene| GeneName = Os02g0558100| Description = Similar to C1C-Nt1 protein| Version = NM_001053678.2 GI:297599429 GeneID:4329678| Length = 10813 bp| Definition = O...")
 
 
(2 intermediate revisions by 2 users not shown)
Line 1: Line 1:
{{JaponicaGene|
+
The rice '''''Os02g0558100''''' was reported as '''''OsCBSCLC3a''''' in 2009 <ref name="ref1" /> by researchers from India.
GeneName = Os02g0558100|
+
==Annotated Information==
Description = Similar to C1C-Nt1 protein|
+
===Gene Symbol===
Version = NM_001053678.2 GI:297599429 GeneID:4329678|
+
*'''''Os02g0558100''''' '''''<=>''''' '''''OsCBSCLC3a'''''
Length = 10813 bp|
+
===Function===
Definition = Oryza sativa Japonica Group Os02g0558100, complete gene.|
+
* CBS domains are found to be associated with several proteins of unrelated functions, such as inosine-5'-mono- phosphate dehydrogenase (IMPDH), AMP-activated protein kinase (AMPK), chloride channels (CLC) and cys-tathionine-β-synthase (CBS).
Source = Oryza sativa Japonica Group
+
* Mutation in CBS domains abolish or strongly reduce activation by SAM and cause homocystinuria.  
 
+
* CBS domain of γ-subunit of AMPK acts as sensor of cellular energy status and mutations cause a glycogen storage disease, which is clinically expressed as a familial hypertrophic cardiomyopathy.
  ORGANISM  Oryza sativa Japonica Group
+
===Evolution===
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
+
* CBS domain exists not only in archaebacterial proteins, but also in eubacterial and eukaryotic proteins
            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
+
* In CBS protein, C-terminal CBS domain exerts an autoin-hibitory effect on the CBS activity, while binding of SAM (S-adenosylmethionine) with CBS domain induces a conformational change which relieves the autoinhibitory effect.
            clade; Ehrhartoideae; Oryzeae; Oryza.
+
You can also add sub-section(s) at will.
|
+
==Labs working on this gene==
Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|
+
* Centre for Computational Biology and Bioinformatics, School of Information Technology, Jawaharlal Nehru University, New Delhi 110067, India
AP = Chromosome 2:22008564..22019376|
+
* Plant Molecular Biology, International Centre for Genetic Engineering and Biotechnology, New Delhi 110067, India
CDS = 22008839..22008952,22009557..22010688,22010800..22011069,22011511..22011773,22012617..22012799<br>,22013252..22013269|
+
* Stress Physiology and Molecular Biology, School of Life Sciences, Jawaharlal Nehru University, New Delhi 110067, India
GCID = <gbrowseImage1>
+
==References==
name=NC_008395:22008564..22019376
+
<references>
source=RiceChromosome02
+
* <ref name="ref1">
preset=GeneLocation
+
Kushwaha HR, Singh AK, Sopory SK, Singla-Pareek SL, Pareek A. Genome wide
</gbrowseImage1>|
+
expression analysis of CBS domain containing proteins in Arabidopsis thaliana
GSID = <gbrowseImage2>
+
(L.) Heynh and Oryza sativa L. reveals their developmental and stress regulation.
name=NC_008395:22008564..22019376
+
BMC Genomics. 2009 Apr 28;10:200. doi: 10.1186/1471-2164-10-200. PubMed PMID:
source=RiceChromosome02
+
19400948; PubMed Central PMCID: PMC2694836.
preset=GeneLocation
+
</ref>
</gbrowseImage2>|
+
</references>
CDNA = <cdnaseq>tcttatgctaaaggaaagtgcaggtatttaactgcatttttcgcttatggaggttgcaatttggtcttagcagctgcagcggcagcaatatgtgcttacattgcacctgctgctgctgggtctggtattcccgaagttaaagcatatcttaatggagttgatgcatattcaatattggcccccagtacgctctttgtgaagatatttggttcaatacttggagtttcagctggatttgtacttggaaaggaaggtcctatggtacatacaggggcatgtattgccaacttgcttggtcagggaggatcccgcaagtaccggcttacatgtaattggctaagatattttaagaatgacagggataggcgggatttaattacatgcgggtctgcagctggagtggcagctgccttccgtgctcctgttggtggtgtcctatttgctcttgaggaagcagcatcatggtggcgaagtgctcttttgtggagggcgttctttacaacggctgttgttgctgtcgtgttgagatctcttattgagttctgtcgtagtggaaaatgcggtctctttgggcaaggtggattaattatgttcgatctcagttcaactgttgcaacctacagtactccagatctaatagcaataattatccttggaataattggtggaatctttggaggcctttttaattttctcttggacaaggttctccgtgtttacagtatcataaacgagagaggtgctccattcaagatccttctcactataacaatatcaattatcacatcaatgtgctcttatggtctcccttggcttgctgcgtgcactccatgtcccgtggatgctgtggagcaatgtcctaccattggacgctctggtaacttcaagaactttcaatgtccaccagggcattacaatgatcttgcatcactctttttcaatacaaatgatgatgccatccgcaacctctttagcaatgggactgaatctgagttccacatgtccacccttttcatctttttcactgctgtgtactgccttggaattctgacgtacggtgttgccgtcccatccggtctcttcatccctgttattctcgctggtgcaacatacgggcgcatagtggggacacttcttggatccatatccgaccttgatcctggtctttttgcccttcttggtgcagcatcttttcttggtggaacaatgagaatgaccgtgtcagtctgcgtgatccttctagagctcaccaacgacctggccatgctccctctggtcatgcttgttcttctcatatcgaagactatagcagataactttaataaaggagtttatgatcagatagtggtaatgaaaggcttgccatacatggaggctcatgctgaaccatacatgaggcacttggttgctggcgatgttgtgtctggcccacttattacgttttcaggtgtcgagaaggtgggaaacattgtccatgcgttaaggttcacaggccacaatggattcccagtggttgatgagccacctctaacggaagcacctgaattggtcgggctcgtgacaaggtctcatctgttggttttgctgaatggcaagatgttcatgaaagaccagctgaaaactagtggtagctttgtccttcaaagattcggtgcctttgattttgccaagccagggtcagggaaaggcttgaaaattcaggacctggacttcactgatgaggagatggaaatgtatgtggatctccatcccgttacaaacacctcaccttatacggtggttgagacaatgtcactcgcaaaagctgcaatcctattccgtgcactaggattgaggcaccttttggttgtgccaaagacaccagataggccacccattgtcggaattctcacgaggcatgatttcgtcgaagaacatatccacgggctgttcccaaatctcaatcctcacaagttccactcgacatcgatgggaggctga</cdnaseq>|
+
==Structured Information==
AA = <aaseq>SYAKGKCRYLTAFFAYGGCNLVLAAAAAAICAYIAPAAAGSGIP                    EVKAYLNGVDAYSILAPSTLFVKIFGSILGVSAGFVLGKEGPMVHTGACIANLLGQGG                    SRKYRLTCNWLRYFKNDRDRRDLITCGSAAGVAAAFRAPVGGVLFALEEAASWWRSAL                    LWRAFFTTAVVAVVLRSLIEFCRSGKCGLFGQGGLIMFDLSSTVATYSTPDLIAIIIL                    GIIGGIFGGLFNFLLDKVLRVYSIINERGAPFKILLTITISIITSMCSYGLPWLAACT                    PCPVDAVEQCPTIGRSGNFKNFQCPPGHYNDLASLFFNTNDDAIRNLFSNGTESEFHM                    STLFIFFTAVYCLGILTYGVAVPSGLFIPVILAGATYGRIVGTLLGSISDLDPGLFAL                    LGAASFLGGTMRMTVSVCVILLELTNDLAMLPLVMLVLLISKTIADNFNKGVYDQIVV                    MKGLPYMEAHAEPYMRHLVAGDVVSGPLITFSGVEKVGNIVHALRFTGHNGFPVVDEP                    PLTEAPELVGLVTRSHLLVLLNGKMFMKDQLKTSGSFVLQRFGAFDFAKPGSGKGLKI                    QDLDFTDEEMEMYVDLHPVTNTSPYTVVETMSLAKAAILFRALGLRHLLVVPKTPDRP                    PIVGILTRHDFVEEHIHGLFPNLNPHKFHSTSMGG</aaseq>|
+
    [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 2]]
DNA = <dnaseqindica>10425..10538#8689..9820#8308..8577#7604..7866#6578..6760#6108..6125#attttcttcagaaacttctctcccccatcatccacaacttgctgtccttgtcttctttttctttttttttttccctcctgctctcatctcagcctctcacttgaactgcagatatatataagcacccagacataaagcaatagtttgagagagagatttagagtttcagagtttcagagaggcagtagaagagaaaggaggatcatcatcttgatctgaatctcgggaagtttttactgtggcctgatgatctgagttcaaccaaggctcgaattttgtaaggtaagaacacaatcatcatccctgcaaatctgtaatacaattggatacctgcaagcagaaagcttacatatatcaaatatactcttcttcctcactgtttcaggcttccgatcccctgaaaccatattaccaattccccaagcattgcagcagcttgtttaatttgctgcaaatttatgcttctgggtttttttttttagtttgttttgatcgcacttgttttgttatttgtttctttttcgacaacagaaattaatcaatccagccttttcgatcgccaaggtgtattcggccaatcaattaagtcataatttttgtgctcaaagctcaattattttcgtctaaccattcttgcattagctagcgtgtttttggacgcccttttctcattcctagtgtaacacttatataatatgtatagattaatgtaatgatattcaactctcttacgtattcggaaaaaaaaaacctaattgtggtttagattagaatttacctagagtatgttaatctccttgcacgatggcaatctcggtttggatgattggatcaccgattattgggggtggaatagtgaagccaagctggatccaacgtgtctgcacgccattggctgcggcccatctctcagtcagtgggcccacttcctttcgtcatcaagaagaatggactggtggtcgatcctacgcataccaaaccttccttaccaaaactggttgagaggtactctgatcctacctcgtatctcaaggggctacataataaatgtgctatggttaacttacaaagctcaacaatacattttcagaaacaactcggtatattagttcaaattcaaacatgttccttttatttatagttctaataattacacctaacctaaaacataaaactagtctagcgattcatgatgatcagtgacccaatttgccgaactatgatagcttatgtggtagactaggacatctctacctactttttttttcatgaacccgttggtttgataaattctttgaaatccccttacgaccacacacacacgatgcaataacacccatcaacccatttggcaaagtgaaaatggtcacatacatcatccattatcatttgtttcaatgtgaaaaagaaacataggagaagaaaattctctaattaaattgacacttcaaaaatccaatacagaaaaatattaatacacacatttttcgtggttggtatatgaccaaaataacccaagaaatcttgacaacccatcttgtttcaaattagtattcaacttacggccaactggctcatttgtccccctcctcctacatcatccttgttgcgttgcaactctattattgtcttcatattcttttttccaagccagcttggaattccatagtatcctaatgtgtaaactattaatcaaatgaccaaacatatttggggtcatatcctggtttggaagtttgtgttattttatccatggatgattgatgttacacgttattcgcatgatgaccctccggcacatgacacacttatgtcaaattttattataccaatggtgaacgaggttctaattaattagcctcacacatgcatgctgttggctagcattgaaatgttattgtgtgttggtattaaacttatggttgagctagttaattagaacaattaagagatccaatgtttagatgtagaattgacaaaaatgaatatagtgctattacttgtatatgctcaaaggccctatatattaagggttctaaagattgttttaaaaataaacaagcatatgcttttttttaaagtaaaacacgcatatatcttactttaaaataatatctcttcggcatgctatgtcattgtagcatttttttggtacatcactaacgtgaaaactatttcatatttgaaacacaatatgtgtgcctatttatatttcttaaattcaaaatattctaaaagatacatatcgatcatttccgagaaaacaatgtgcctatattcataagcacattggtggtttagtaacacaaacacataaaaattaaatcgcaaatatcatgatattgtttcaagaaatatgaaattcactaaagatgttaatctaattgtagaaccattctatgatattcatgacaatgcagtaatgttgggcattccatgtcaagctgagattccatttggctagaagtagtgaagtactaaaaggaaacaacatatgaaaattctgttgctgtagctaaaataaaactggagcaatccacgagaagtagtgtactagtgtgtgggcttatttgggattactccaactttcaaatctagttcaggaatggagctacgaaatggcccgaccctgctccatcccctaatttatttttccatttcactctaactcgctttgctccgttggttggctctaagctagagctctaccaaataaaccctaaagcatgtgatcaatatgctgtgaaaatagcaggttagtgtgtaaaggaacttttttggacgaacttgttttggtgattaccgaatcgggatgcttaaaggcatgtttagttcgaaaaagaaaatttttgggtgtcatatcgaatgtttgaccagatgtcggaagaggttttcggacacaaatgaaaaaactaattgcataactcacctggaaaccgcaagacgaatcttttgagcctaattaatccgtcattagcacatgtatgttactgtagtacttatggctaatcatagactaattaaactcaaaagattcggctcgcgatttcctcattaactatgcaattagtttttttaatatatatttaatgctctatgtatgtgtctaaagatttgatgtgatgtttttgggtaaaatttttgggaactaaaccaggcaaaaaaaaaaaacaaagtctacgttgatgtttggtgggtcccacaagcaaaattccatccatgtgtacacgtatcagttttgcatccactggctgcatctgcattcgccagtcagcctcccaatcaaacgctacgtggcttctgggacccacaggcggcggagtggggcccagtcgccatgtgtgcttgtacttcgttgcccagtccccggtgggcccgtattttagggccacatctgcgccgtccatttctgaacgtccggtccccgcatccgcatgttgtcctgactagcacgcatcgcataatgccttctctctctgtttgtctgacgtacattcaatcttctaaaacagacaatttacagttttttaaaaagcaaaactttgaactaaaaatttccaaattgcgccttaatgaattatttgtggaaaacgtctttaatcaccctccaaccatttataaattgaccataaatcacttgctgatcaaacttttaaaattttaaccatcaattttatattggaataatttatggatataattttatgatattatgttggtacatttcaagacaaatctacttatatttttttttgaaaaaaactaagaatttgatgaattattggtagccagaattttaaaattttgatcaaattgaatctaaatatcaaatatttatggtcagacagggcgaggtaaggatcatgaggatacaccactaatatgcctcaagaggctcaatttgtggttgctgtgctgtgctttgcttaatttttaaagttgatgtaggaatttgaacttattgtattttaattcaatgatcgaattacaaatagataaaatatgtttttcaattttcatgattccccatttttattttcttagactataatatatcgtttgcaatataaattaaaataaaaccagttcgccaaacaccaaaatgtgtaaaagttgttggtacaaatgagattatcataatccaccgtaatgcccatagaagtcggagcatttttgtagtacatgcatgtgtagcgttcaaagttcattgttattcttagacttgcccttttttttccagtggtaataattgatcattgcaaaaaaaaaaagaaaaaaaagggcaagggctttgtatggtttgacgccaaagttgcattttggaattcaaacaagccaaataattgtggtctagtactcaaagatactcatagggacagggtttgcgtgcgtgtgttcataggggtgaggtgagtacgcatgcgttgtgagtgtctgtactatgtaattcttaaaaaaaaaattggacaatgcttttttctacaaaccaaatagatgatcaatattttcatattgccaaatttgtggcatgtctccaatcacatttagaagtgtgataggtatacatacctctgacttgtatactcaaaaaaaagaaaaggaaaaaaaagcatactattcccacaagataactcccctggattttctaaaatatacaaacatccaaaaacattttaagatcatttcccatcatcaaacacatgatcattttttcctctaataataattattaatcttggcctcctcttggattcttcctaacctgtatacattgcagagaagccaagcaaagaaagtctcgcggagaagagaagaagaagaagaagaagaagaagaagaagagctctctgaccaaagcggcggcggcggcgagcggcggcggaatggaggggcagtcgcagcaccgggcgccggagagggaggggagccacaactacgacatcgagagcacggacgggtccggcgggctgtggcggcggaacggctcgtcgtcgggggcgctgctccgctacaacgacagcggcggcggccgcagcgggagcgccggggagccgctgctgcggaagcgcaccatgaacaccacctcccagatcgccatcgtcggcgccaacgtctgccccatcgagagcctcgactacgagtacgcattcgcgcgccctctgttcatctgctcaatgcttttgttcttttagttacatcatttatgggtgatttattaggtggttcggttgcatttaggagacatatttgatctttactggattaatcttgcaaattcaagtgcttttattgctgtttcaatgatggggaatagtgcaaaacatgattcttgtttctatgtcattagcgattagtcgaggcgatgttagcacataatctcgaatctcgggtagccgaatgctagcttttcccttagctagctccttgctgatctggcttgtacttcaaataaccagtactcccttttgtttctttgggtgattattgagtatggaaacgaagttactaggagctcatttgaagtaagaaaaaagaggtggaagctacaatggattatatcaatcaatttagacattgtttttgaagaataaatgcagtgatagtacagaaccaataatttgaaagataaaatttcatgcaaataccacgcggcagttcattagatgatttttttcttatttgggagatgtttactgaagaatgaattgcagagagaaaggacatgtgtagatactaatatcatgtaggaggaaaactgtattaattaattaagatgaacaagaaccaaaatttgatccaaagagggctttttttttaagccaaagtgaacttgaacctgtattcctagataaatgcaagtatcaaacatttgtattagacactttagtccatctgttacatccttcatatgttttatgtttcagagttgttgagaacgaccttttcaagcaagactggcgatcaagaaagaagaagcagatatttcagtacattgttctgaagtggaccttggtgcttcttattggcctgttgactggacttgttggcttcttcaacaatcttgcagttgaaaacattgctggattcaaactgttgctcacgggtaatcttatgctaaaggaaaggtaaggtttcattttgcatttgatgggagaactattttgctgtttttgctatttttccgtacattgcttcagatcctgctgatgatttataactcatcacagctgtagaatacattattcggctatttgctacacttttatacattgtattgtgataatgcttcatatgttgctaaggtcatggaaaacagtcttttaagtttctttgttgcagtaggcagtgctcctgtcattacttcagaaaacaagggtttctttgttgcaagcagtaacaagtgagtcgatatagtagaaaagcttgtgttatgcgtagctgtggagcatatgaagttgctaatagagatttattaatgacaactttgtaatgattcaaaataatcaatagagatgagatattcaatagtttacaactgcggaattatttgaagtaatcaatggtggcttgcttccagtgcaggtatttaactgcatttttcgcttatggaggttgcaatttggtcttagcagctgcagcggcagcaatatgtgcttacattgcacctgctgctgctgggtctggtattcccgaagttaaagcatatcttaatggagttgatgcatattcaatattggcccccagtacgctctttgtgaaggtatatctaacttagaatcagatgcattgcgtatcttcccagaattaacttgtgaaataggatcatgggatcgctaagctccattgcttactattgttcatatcatattacataaatattttcgtaaaacaaagtattctaccttttattttcctggtgcatatgttttgtgggatcgtgggtagtgtgaagtttcactgagagataatgatatactccctccggtttcattttaattgacgttttggacaataacacggtctacaagatatatctttgaccttatttttctactataatatatataataaataaatgcatgtttacttttaaaagacaaatctatatatgttgttctagctcttttaaactaaatatttttaaagttattgatagtcaaagttaaaaaagtttgaccacaaccttgtccaaaacgtcaattaatatggaaccggagggagtatggagcctatgtgtaattgaaatatccaatgtcattctactactaaagtacaaaaaaaaaatactgtactgttttactgatttctactagtagctgcaggtttagaaagtggtatagccggttcattctcacttttctgtgctgatagaaacctagtagattctagtgaatgccctttgtgaaaattctacagctgattaagtttgaaaatcttacagtggatatgactgtttttataattgattgttggaagtattatgaacctgtttgcagttggtatgtacgtctgtattgataattttttacaaattctacaagtaacaattgtgggttctggtttctgtagaatctcatcttctaattgttctactactttgtagatatttggttcaatacttggagtttcagctggatttgtacttggaaaggaaggtcctatggtacatacaggggcatgtattgccaacttgcttggtcagggaggatcccgcaagtaccggcttacatgtaattggctaagatattttaagaatgacagggataggcgggatttaattacatgcgggtctgcagctggagtggcagctgccttccgtgctcctgttggtggtgtcctatttgctcttgaggaagcagcatcatggtagcagttctttccttggaagctataaattttcttttgaatgaagcattttctttgtttgacttgtctgccattcctgtgatatcttttttatgaaataaattatcactgggattttacaaaattgtaacaatagtagtctgcagcaatcagcttcagtatgcatctttcttcttctattaatgcaatgatatgctcattgcatattcgagacaaagaaagtatgcatctttcgtatctaatattgatgttaagtgtgtctttggttttttgacaagaaccattctttggacatgtagttatatggctgtatcagtagatttaaactcaaaaagaatttgataattccatagttatcaataattaatttgcatttttgtcatcaaaactttctatgccaacatgacaattaatgatagtttttcataacttgttttataggtggcgaagtgctcttttgtggagggcgttctttacaacggctgttgttgctgtcgtgttgagatctcttattgagttctgtcgtagtggaaaatgcggtctctttgggcaaggtggattaattatgttcgatctcagttcaactgttgcaacctacagtactccagatctaatagcaataattatccttggaataattggtggaatctttggaggcctttttaattttctcttggacaaggttctccgtgtttacagtatcataaacgagtaagtactatgtagcaattgtaaattggtacaaatggatttgcaatagcctcttctgcttgtgttgctaattaagatgtgatatcttctgctttgttcatattcctgcaggagaggtgctccattcaagatccttctcactataacaatatcaattatcacatcaatgtgctcttatggtctcccttggcttgctgcgtgcactccatgtcccgtggatgctgtggagcaatgtcctaccattggacgctctggtaacttcaagaactttcaatgtccaccagggcattacaatgatcttgcatcactctttttcaatacaaatgatgatgccatccgcaacctctttagcaatgggactgaatctgagttccacatgtccacccttttcatctttttcactgctgtgtactgccttggaattctgacgtacggtgttgccgtcccatccggtctcttcatccctgttattctcgctggtgcaacatacgggcgcatagtggggacacttcttggatccatatccgaccttgatcctggtctttttgcccttcttggtgcagcatcttttcttggtggaacaatgagaatgaccgtgtcagtctgcgtgatccttctagagctcaccaacgacctggccatgctccctctggtcatgcttgttcttctcatatcgaagactatagcagataactttaataaaggagtttatgatcagatagtggtaatgaaaggcttgccatacatggaggctcatgctgaaccatacatgaggcacttggttgctggcgatgttgtgtctggcccacttattacgttttcaggtgtcgagaaggtgggaaacattgtccatgcgttaaggttcacaggccacaatggattcccagtggttgatgagccacctctaacggaagcacctgaattggtcgggctcgtgacaaggtctcatctgttggttttgctgaatggcaagatgttcatgaaagaccagctgaaaactagtggtagctttgtccttcaaagattcggtgcctttgattttgccaagccagggtcagggaaaggcttgaaaattcaggacctggacttcactgatgaggagatggaaatgtatgtggatctccatcccgttacaaacacctcaccttatacggtggttgagacaatgtcactcgcaaaagctgcaatcctattccgtgcactaggattgaggcaccttttggttgtgccaaagacaccagatgtaagtactctcacactcattaagtcacgcatggaatgcacttacatgagaaataacagtaaagatttaggaatgcttacaagtgattcaattacttaaccttgcatagatcatttctgtgcttctattcgctatctcgtatctgcgatctgcattctagaatttattttttacatggcagttaaagtcatactgtaggtcattattccttcaatacatgccaagatcaaactttacccctcatatacgatgttttccaatacacgtacacgtactattgtcttgttattacaggctaagtttgaaaattatactcccttcattcacttttattaagcgtattttgacctgaaagattttgacttattagttaacatacaagtatgtttagtatataaaacttataccattagattcatatttcgaagcactttcatactacattggttttacatctgttaggaatatgttttatgagaaataaatggtcaaagtttagtcttaaagactttctgaaattaaaatacgccttatgaaaaaaagaaactgagggagcaacttgtatgacaacacattgtctttttccctttcctgttggctgcagaggccacccattgtcggaattctcacgaggcatgatttcgtcgaagaacatatccacgggctgttcccaaatctcaatcctcacaagttccactcgacatcgatgggaggctgatttttaagcgttttgccgccactcgttttatgtgaagtataggaagtgttcattatatgtaatttacaaaattgtgtctgtcatttgttggagagagctcatcatctgtacatcggttgtagcatatcctcttttacaggattcatcttgtagcgtattttgtctcagcttgcttattttgagtctgacaggaagcgctctgtaaatgtagagcaaacattcggaacaccgaaattttatatcataaagttgtgctaaggcatatttgaaagttg</dnaseqindica>|
 
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001053678.2 RefSeq:Os02g0558100]|
 
}}
 
[[Category:Genes]]
 
[[Category:Japonica mRNA]]
 
[[Category:Oryza Sativa Japonica Group]]
 
[[Category:Japonica Genes]]
 
[[Category:Japonica Chromosome 2]]
 
[[Category:Chromosome 2]]
 

Latest revision as of 03:00, 30 March 2017

The rice Os02g0558100 was reported as OsCBSCLC3a in 2009 [1] by researchers from India.

Annotated Information

Gene Symbol

  • Os02g0558100 <=> OsCBSCLC3a

Function

  • CBS domains are found to be associated with several proteins of unrelated functions, such as inosine-5'-mono- phosphate dehydrogenase (IMPDH), AMP-activated protein kinase (AMPK), chloride channels (CLC) and cys-tathionine-β-synthase (CBS).
  • Mutation in CBS domains abolish or strongly reduce activation by SAM and cause homocystinuria.
  • CBS domain of γ-subunit of AMPK acts as sensor of cellular energy status and mutations cause a glycogen storage disease, which is clinically expressed as a familial hypertrophic cardiomyopathy.

Evolution

  • CBS domain exists not only in archaebacterial proteins, but also in eubacterial and eukaryotic proteins
  • In CBS protein, C-terminal CBS domain exerts an autoin-hibitory effect on the CBS activity, while binding of SAM (S-adenosylmethionine) with CBS domain induces a conformational change which relieves the autoinhibitory effect.

You can also add sub-section(s) at will.

Labs working on this gene

  • Centre for Computational Biology and Bioinformatics, School of Information Technology, Jawaharlal Nehru University, New Delhi 110067, India
  • Plant Molecular Biology, International Centre for Genetic Engineering and Biotechnology, New Delhi 110067, India
  • Stress Physiology and Molecular Biology, School of Life Sciences, Jawaharlal Nehru University, New Delhi 110067, India

References

  1. Kushwaha HR, Singh AK, Sopory SK, Singla-Pareek SL, Pareek A. Genome wide expression analysis of CBS domain containing proteins in Arabidopsis thaliana (L.) Heynh and Oryza sativa L. reveals their developmental and stress regulation. BMC Genomics. 2009 Apr 28;10:200. doi: 10.1186/1471-2164-10-200. PubMed PMID: 19400948; PubMed Central PMCID: PMC2694836.

Structured Information