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| − | {{JaponicaGene|
| + | The rice '''''Os03g0647600''''' was reported as '''''OsNF-YA3''''' in 2016 <ref name="ref1" /> by researchers from China. |
| − | GeneName = Os03g0647600|
| + | ==Annotated Information== |
| − | Description = Similar to Nf-Y-A subunit|
| + | ===Gene Symbol=== |
| − | Version = NM_001057309.1 GI:115454346 GeneID:4333575|
| + | *'''''Os03g0647600''''' '''''<=>''''' '''''OsNF-YA3''''' |
| − | Length = 5490 bp|
| + | ===Function=== |
| − | Definition = Oryza sativa Japonica Group Os03g0647600, complete gene.|
| + | * Nuclear factor γ (NF-γ) is a ubiquitous transcription factor that regulates important physiological and developmental processes.<ref name="ref1" /> |
| − | Source = Oryza sativa Japonica Group
| + | * In plants, the roles of NF-γ were identified in regulation of embryogenesis, flowering time, chloroplast biogenesis, seed germination and stress tolerance.<ref name="ref1" /> <ref name="ref2" /> |
| | + | ===Expression=== |
| | + | * Expression profile analysis covering the whole life cycle revealed that transcripts of OsNF-γ differentially accumulated in a tissue-specific preferential or constitutive manner.<ref name="ref1" /> |
| | + | * Analysis of expression correlation and Gene Ontology annotation suggested that OsNF-Y genes were co-expressed with genes that participated in stress, accumulation of seed storage reserves, and plant development. |
| | + | * Co-expression analysis also revealed that OsNF-Y genes might interact with each other, suggesting that NF-γ subunits formed complexes that take part in transcriptional regulation.<ref name="ref1" /> |
| | + | ===Evolution=== |
| | + | * NF-γ is a heterotrimeric complex composed of three subunits: NF-γA (CBF-B/HAP2), NF-γB (CBF-A/HAP3), and NF-γC |
| | + | (CBF-C/HAP5). |
| | + | * NF-γ complexes are CCAAT-specific transcription factors that bind to CCAAT sites in DNA to control the expression of target genes<ref name="ref1" /> . |
| | + | You can also add sub-section(s) at will. |
| | + | ==Labs working on this gene== |
| | + | * College of Life Science and Technology, Huazhong Agricultural University, Wuhan, 430070, China |
| | + | * College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070, China |
| | + | ==References== |
| | + | <references> |
| | + | * <ref name="ref1"> |
| | + | Yang, W., Lu, Z., Xiong, Y., & Yao, J. (2016). Genome-wide identification and co-expression network analysis of the OsNF-γ gene family in rice. The Crop Journal. |
| | + | </ref> |
| | + | * <ref name="ref2"> |
| | + | Laloum T, De Mita S, Gamas P, Baudin M, Niebel A. CCAAT-box binding |
| | + | transcription factors in plants: Y so many? Trends Plant Sci. 2013 |
| | + | Mar;18(3):157-66. doi: 10.1016/j.tplants.2012.07.004. Epub 2012 Aug 30. Review. |
| | + | Erratum in: Trends Plant Sci. 2013 Oct;18(10):594-5. PubMed PMID: 22939172. |
| | + | </ref> |
| | + | </references> |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| + | ==Structured Information== |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 3]] |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
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| − | |
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| − | Chromosome = [[:category:Japonica Chromosome 3|Chromosome 3]]|
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| − | AP = Chromosome 3:25829518..25835007|
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| − | CDS = 25829908..25830351,25831063..25831206,25831605..25831673,25831843..25831961,25833683..25833971<br>|
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| − | GCID = <gbrowseImage1>
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| − | name=NC_008396:25829518..25835007
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| − | source=RiceChromosome03
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| − | preset=GeneLocation
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| − | </gbrowseImage1>|
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| − | GSID = <gbrowseImage2>
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| − | name=NC_008396:25829518..25835007
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| − | source=RiceChromosome03
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| − | preset=GeneLocation
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| − | </gbrowseImage2>|
| |
| − | CDNA = <cdnaseq>atgctgagcttcaagcagagccacgaggggttcggccatgtcgccgccgctggagctggaccgcagcagcagcagcagccgtggtgggcggggtcgcagctgctgtacggggaggcgtcgccggaggaggcggcgctgcgcgacggcggccagttccaggtcgtgcccggaggccgcgccgcgctggatccggcggcgccggagccggagaagacggcggtgccggcgatgcccaagagaggaggaggaggaggggctcctgaggtgctgaaattctcggtgttttcaggtaatttggagccgggagatacaggagagaagaacagagagcactctgccactattgcaatgcaatcgccgttgccagaatacaacggccatttcgagcttggtcttggtcaatccatggtctctcccaattatccttgtattgaccaatgctatggtcttatgaccacctacgcgatgaaatcaatgagtggcgggcgaatgctactgccgctgaacgcgccagccgatgcgccgatctatgtcaacgcgaagcagtacgaaggcatcctccgccgtcgccgtgcccgcgccaaggcccagagggagaacaggctggtcaaaggcaggaagccctacctccacgagtcgcgccaccgccacgccatgcgccgggccagaggctccggcggccgcttcctcaacaccaagaaagaagccaccgccgccggatgcggcggcagcagcaagacgcccctcgcgtccctcgtcagccccgccgacgtagcccatcgtccaggctccggcggccgcgcgtccagcctctccggctccgacgtgtcgtcgccgggaggcgtcatgtacgaccaccaccgccacgacgacgccgacgcggcggaccactacaacagcatcgaccaccacctccgcacgccgttcttcaccccgctcccgatcatcatggacagcggcggcggcggcggcgaccacgcctcacactccgccgccgccgtcgccgcccccttcaggtgggcgacggcggccggcgacggctgctgcgagctcctcaaggcgtga</cdnaseq>|
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| − | AA = <aaseq>MLSFKQSHEGFGHVAAAGAGPQQQQQPWWAGSQLLYGEASPEEA ALRDGGQFQVVPGGRAALDPAAPEPEKTAVPAMPKRGGGGGAPEVLKFSVFSGNLEPG DTGEKNREHSATIAMQSPLPEYNGHFELGLGQSMVSPNYPCIDQCYGLMTTYAMKSMS GGRMLLPLNAPADAPIYVNAKQYEGILRRRRARAKAQRENRLVKGRKPYLHESRHRHA MRRARGSGGRFLNTKKEATAAGCGGSSKTPLASLVSPADVAHRPGSGGRASSLSGSDV SSPGGVMYDHHRHDDADAADHYNSIDHHLRTPFFTPLPIIMDSGGGGGDHASHSAAAV AAPFRWATAAGDGCCELLKA</aaseq>|
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| − | DNA = <dnaseqindica>4657..5100#3802..3945#3335..3403#3047..3165#1037..1325#caaaagcagcagtggcagcagccaccactttgcacaaaagaagcaaagtaaatggatggccatcgccgttgaggaagggttggtggccatctagagagagagagagaaactagagagagagaggggtgagcagctgagctctgcatctatatacagcactgcatctctctctatttctctctctatatatatctctatctacagtggattttctctctcctctctctctcttgccgttgctgttcgatactgttgttgtcctctcgtggccattattagatggcctcctgctgctgaaatgtgagtgagagctttgctttgcttgcttgctggctggctggctggctagctgggggttggcttcccctcatcctcgtgcatcatccactgtgctcggctcagctgtctgccctgttcttgctttggtttgtactaaatcctcttccgtagtaatactactctaggacatagcatacatgtaacatggatatggatacatctcgccgtccttcccttcttttcatgctgatcttggtgtgtcctttcttcttcctcttcttcttcttcttggttcctttgatttttggttcagaacaattaatcaagcatttattttgcttaaaaatgtgtttctctctctctctcttcttggctttctgcgagcatctgttgctcttttttttctttgagattatttcatcggtttaccctgccaagtggagtatacatgttcttccatctgttcagttcttgttcttccctccccttctgattcggctcctgggaattttctttatccctgcgaatttttttaaccgtctgcttgcgcatcatcacaaggctctaaattaatccgcttttgtttaatcgtttggtcttaaggtggttggacggttagcatcttcctcctcaagctgagatccttcttgacgccattggaggggtcgctgtcgcctgcgtccttgagcctccctgcttttctttttctctctctctctcctcggcgagggagacgacgacgacggtggcggcggcgatgctgagcttcaagcagagccacgaggggttcggccatgtcgccgccgctggagctggaccgcagcagcagcagcagccgtggtgggcggggtcgcagctgctgtacggggaggcgtcgccggaggaggcggcgctgcgcgacggcggccagttccaggtcgtgcccggaggccgcgccgcgctggatccggcggcgccggagccggagaagacggcggtgccggcgatgcccaagagaggaggaggaggaggggctcctgaggtgctgaaattctcggtgttttcaggtgaggttctttgcttcttttttttttcatctttgtcagataataataataagtttatgtgaattttgttttcttctttgcataagtaaatcaaaaaggtgattaattgaaatgaagaattttggcatgcatgtatagctgggttggatctgtaaacacaagggaattattggattatctcctattttctctagcttgcaaatctgaaatctcaaagaattttcaaggcatcatttcacagtctgattgattgttaccctttttttaccaagagaaatctccagctttttatagaaaggagtaatagcaagttctctgatggagtgatggttagtgagcagtttgctattgcttgattgctacacatatttttgaaagaattgaggtttcttctgcaattgatttgtgagaaaatcttgcatgaactagatggatttgcatatgaatgttgcatgaactaaagagggtaataactttgattcccagatgtttttgggtccaaacactgtttggtggtccctttagttacatggacaacactgtttgtcatgcttcacatgtaggcgcattcactgacatttgatttgatgtttcctgttgcaaggcttgccggtggtggtgggcattctttgttttttttaaaaaaaaaaatcgcttataaacctataggatcaaaaaggaacaaataattgaatcaactaagctcccaacccttgaataagtcaagaaaatgggggaatcaggattgaggtatgtaatgtatttgaaggccatggcactgtaacaattggtcaatctaatattttgcaatcttgtttgattagttctatgactgttgcaattttttgtcatctaaaaaaagaacaagacattgcattgttcggtatttttttatgtttttgaggggagcaattgtttcgcctcgtcgtttcgcccattggaaaaaaaacacaagaacaaggtcttattgtggggacatcttccaccaaacactacccaagaataccacatgaggaaataacatgtccttgacaaaaatatagcaaataatatatgacaggggacatacggcacatacttgcgggtttagaagccaacgattctccagttttgaaccttgaatagctttttagctcatatgaccttataaaatagagtaggccaagacattatagccttctcttcagattccatgagtggcactcacgtctctccaaacattatgcatttctataatttaaagcttacatcacctgtcctagaataatttagttgagataaggaagcatcagccgtttggtgtcctataaaatgctctgatgctctaaagtgagactatatacacttaattactttcagttggataattcagaacattgcctagatttgttgcgtgttgttgatctgcatcttttagaatgtggcaagcttctaaaaggaaaaaatacaatgcatgaatgccccttttgaaggttgagagaatatatattgaacttgaaaaataaaagacagaaatggtgacattctaaaacctgttagatgttgtcatggagcactgaaaattaatcatggtaagaagaatcagctaccaaatctttctcatccaagctggccaatgtttccactctagttatgcatataaggattcatagagaagtttttgtttatgaactatggtaggacaacttggtgttgttatactaagaaactatggggttcaggtaatttggagccgggagatacaggagagaagaacagagagcactctgccactattgcaatgcaatcgccgttgccagaatacaacggccatttcgagcttggtcttggtcaatccatggtaaacctttcttctaaacttttcagataggtggaaaagaaagataaactgctatcatgttcactgttcagttggaaattattcagattgtactactaaaaatttatttctgaatagtaccatcagtgtgtttgcttgctaattggtaacatactaacatgtgtttcaggtctctcccaattatccttgtattgaccaatgctatggtcttatgaccacctacgcgatgaaatcaatggtatgggttgctttgtcctatactaaataatattttctatgtttcatataataagatttttttgttttaaagtcaaaattcttttaagtttaaccaaatttataaaagaaaaacataccaatatttttaacacgagacaaacatagtatcaatatatattcaatgttagatttaataaaaactaacttggtattgtaattgtagatgaggtcagacttaaaagcagtttgatttagaaaagaaaaggtcaacatgcattgtaatataaaacagagggaatagcatttcaaatgcgatattagactgatccactgaatcacaattgtacgaagtatactgagaaaaattttgtgatacatgatgtttctctgacatcctgcatttgggggtgtttgcagagtggcgggcgaatgctactgccgctgaacgcgccagccgatgcgccgatctatgtcaacgcgaagcagtacgaaggcatcctccgccgtcgccgtgcccgcgccaaggcccagagggagaacaggctggtcaaaggcaggaaggtcagaaccccagcctccttctagtagtccccatttgccaatgtaattttatgaataaaatagcttgatcaaatggcttgtgaaaaatgttttagcaaatacacttttagttacagatttttgtatgtttgccatctaaaaaaaattacagctttttacgagtatatggtaacgaaatttggtggtgaagacaaaagtttttttcttttaatttactccctcgaataattgacactggaagctttgaccgcttgtatttttcttcttgaaaatatgtagagtgtaatgttaaaaatatagtcatacaaccttcattcatcacaatattatgctgtaaaagaaatttatggtaagttactttatccagtttcataattcttaacattttagataagaataagatcaaaatttcataacttttactatcaatatttagtttaaaggcactagaacaatatatataaatttatcttacaaagtattataataaaagtaaaaatatatttgtttattgtatatattataatataaaaacatagttaaaaatatactttggagaacatgtcatttactaaaacgtaagaatgatgtaaccggagggagtattcgagaacgaagtgagtaatataatttgagtatgatgtaaatgttccttttgttgagtttgttctcaaatctcagcgcatatactgctgctcgttgatggtgcagccctacctccacgagtcgcgccaccgccacgccatgcgccgggccagaggctccggcggccgcttcctcaacaccaagaaagaagccaccgccgccggatgcggcggcagcagcaagacgcccctcgcgtccctcgtcagccccgccgacgtagcccatcgtccaggctccggcggccgcgcgtccagcctctccggctccgacgtgtcgtcgccgggaggcgtcatgtacgaccaccaccgccacgacgacgccgacgcggcggaccactacaacagcatcgaccaccacctccgcacgccgttcttcaccccgctcccgatcatcatggacagcggcggcggcggcggcgaccacgcctcacactccgccgccgccgtcgccgcccccttcaggtgggcgacggcggccggcgacggctgctgcgagctcctcaaggcgtgacagccttgaggcggggatctccaggcgtgcccagagctgctgctgatcgatcaccatcagctttggctgcctgtaggcaaatcattcttggctctttacttgcattggggttcttgcaagcaactctcctcgtcacctaccaaaactgtccctgaaacttctctagtgctggggtctcgatcagggatgatgatgtgatggaggagaggcttacccatatgcctgtaaattatggttagtgttctgattaagcaactagtagtacttggtaattactggctatgaattagtagtatggactctggtgtcaggttgctctttgtctgaataaactggagtcgtttgaagctttgcaacagctgtgagtgaaactatgtgcttgcttgcttg</dnaseqindica>|
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| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001057309.1 RefSeq:Os03g0647600]|
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| − | }}
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| − | [[Category:Genes]] | |
| − | [[Category:Japonica mRNA]]
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| − | [[Category:Oryza Sativa Japonica Group]] | |
| − | [[Category:Japonica Genes]] | |
| − | [[Category:Japonica Chromosome 3]]
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| − | [[Category:Chromosome 3]]
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