Difference between revisions of "Os12g0613000"
(Created page with "{{JaponicaGene|
GeneName = Os12g0613000|
Description = Similar to NF-YA subunit|
Version = NM_001073793.1 GI:115489547 GeneID:4352778|
Length = 3858 bp|
Definition = Oryz...") |
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| − | + | The rice '''''Os12g0613000''''' was reported as '''''OsNF-YA9''''' in 2016 <ref name="ref1" /> by researchers from China. | |
| − | + | ==Annotated Information== | |
| − | + | ===Gene Symbol=== | |
| − | + | *'''''Os12g0613000''''' '''''<=>''''' '''''OsNF-YA9''''' | |
| − | + | ===Function=== | |
| − | + | * Nuclear factor γ (NF-γ) is a ubiquitous transcription factor that regulates important physiological and developmental processes.<ref name="ref1" /> | |
| − | + | * In plants, the roles of NF-γ were identified in regulation of embryogenesis, flowering time, chloroplast biogenesis, seed germination and stress tolerance.<ref name="ref1" /> <ref name="ref2" /> | |
| + | ===Expression=== | ||
| + | * Expression profile analysis covering the whole life cycle revealed that transcripts of OsNF-γ differentially accumulated in a tissue-specific preferential or constitutive manner.<ref name="ref1" /> | ||
| + | * Analysis of expression correlation and Gene Ontology annotation suggested that OsNF-Y genes were co-expressed with genes that participated in stress, accumulation of seed storage reserves, and plant development. | ||
| + | * Co-expression analysis also revealed that OsNF-Y genes might interact with each other, suggesting that NF-γ subunits formed complexes that take part in transcriptional regulation.<ref name="ref1" /> | ||
| + | ===Evolution=== | ||
| + | * NF-γ is a heterotrimeric complex composed of three subunits: NF-γA (CBF-B/HAP2), NF-γB (CBF-A/HAP3), and NF-γC | ||
| + | (CBF-C/HAP5). | ||
| + | * NF-γ complexes are CCAAT-specific transcription factors that bind to CCAAT sites in DNA to control the expression of target genes<ref name="ref1" /> . | ||
| + | You can also add sub-section(s) at will. | ||
| + | ==Labs working on this gene== | ||
| + | * College of Life Science and Technology, Huazhong Agricultural University, Wuhan, 430070, China | ||
| + | * College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070, China | ||
| + | ==References== | ||
| + | <references> | ||
| + | * <ref name="ref1"> | ||
| + | Yang, W., Lu, Z., Xiong, Y., & Yao, J. (2016). Genome-wide identification and co-expression network analysis of the OsNF-γ gene family in rice. The Crop Journal. | ||
| + | </ref> | ||
| + | * <ref name="ref2"> | ||
| + | Laloum T, De Mita S, Gamas P, Baudin M, Niebel A. CCAAT-box binding | ||
| + | transcription factors in plants: Y so many? Trends Plant Sci. 2013 | ||
| + | Mar;18(3):157-66. doi: 10.1016/j.tplants.2012.07.004. Epub 2012 Aug 30. Review. | ||
| + | Erratum in: Trends Plant Sci. 2013 Oct;18(10):594-5. PubMed PMID: 22939172. | ||
| + | </ref> | ||
| + | </references> | ||
| − | + | ==Structured Information== | |
| − | + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 12]] | |
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| − | [[Category:Genes]] | ||
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| − | [[Category:Oryza Sativa Japonica Group]] | ||
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Latest revision as of 03:40, 31 March 2017
The rice Os12g0613000 was reported as OsNF-YA9 in 2016 [1] by researchers from China.
Contents
Annotated Information
Gene Symbol
- Os12g0613000 <=> OsNF-YA9
Function
- Nuclear factor γ (NF-γ) is a ubiquitous transcription factor that regulates important physiological and developmental processes.[1]
- In plants, the roles of NF-γ were identified in regulation of embryogenesis, flowering time, chloroplast biogenesis, seed germination and stress tolerance.[1] [2]
Expression
- Expression profile analysis covering the whole life cycle revealed that transcripts of OsNF-γ differentially accumulated in a tissue-specific preferential or constitutive manner.[1]
- Analysis of expression correlation and Gene Ontology annotation suggested that OsNF-Y genes were co-expressed with genes that participated in stress, accumulation of seed storage reserves, and plant development.
- Co-expression analysis also revealed that OsNF-Y genes might interact with each other, suggesting that NF-γ subunits formed complexes that take part in transcriptional regulation.[1]
Evolution
- NF-γ is a heterotrimeric complex composed of three subunits: NF-γA (CBF-B/HAP2), NF-γB (CBF-A/HAP3), and NF-γC
(CBF-C/HAP5).
- NF-γ complexes are CCAAT-specific transcription factors that bind to CCAAT sites in DNA to control the expression of target genes[1] .
You can also add sub-section(s) at will.
Labs working on this gene
- College of Life Science and Technology, Huazhong Agricultural University, Wuhan, 430070, China
- College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070, China
References
- ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Yang, W., Lu, Z., Xiong, Y., & Yao, J. (2016). Genome-wide identification and co-expression network analysis of the OsNF-γ gene family in rice. The Crop Journal.
- ↑ Laloum T, De Mita S, Gamas P, Baudin M, Niebel A. CCAAT-box binding transcription factors in plants: Y so many? Trends Plant Sci. 2013 Mar;18(3):157-66. doi: 10.1016/j.tplants.2012.07.004. Epub 2012 Aug 30. Review. Erratum in: Trends Plant Sci. 2013 Oct;18(10):594-5. PubMed PMID: 22939172.
