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| − | {{JaponicaGene|
| + | The rice '''''Os06g0682750''''' was reported as '''''OsLLA5''''' in 2010 <ref name="ref1" /> by researchers from China. |
| − | GeneName = Os06g0682750|
| + | ==Annotated Information== |
| − | Description = SWAP/Surp domain containing protein|
| + | ===Gene Symbol=== |
| − | Version = NM_001188030.1 GI:297725190 GeneID:9266375|
| + | *'''''Os06g0682750''''' '''''<=>''''' '''''OsLLA5''''' |
| − | Length = 7662 bp|
| + | ===Function=== |
| − | Definition = Oryza sativa Japonica Group Os06g0682750, complete gene.|
| + | * Arabinogalactan proteins is an umbrella term applied to a highly diverse class of cell surface glycoproteins, many of which contain glycosylphosphatidylinositol lipid anchors.<ref name="ref1" /> <ref name="ref2" /> |
| − | Source = Oryza sativa Japonica Group
| + | * Arabinogalactan proteins (AGPs) comprise a family of hydroxyproline-rich glycoproteins that are implicated in plant growth and development.<ref name="ref1" /> <ref name="ref2" /> |
| | + | * Arabinogalactan proteins might be soluble signals, or might act as modulators and coreceptors of apoplastic morphogens; their amphiphilic molecular nature makes them prime candidates of mediators between the cell wall, the plasma membrane, and the cytoplasm.<ref name="ref1" /> <ref name="ref2" /> |
| | + | ===Expression=== |
| | + | * The RT-qPCR analysis reveal that several rice AGP-encoding genes are predominantly expressed in anthers and display differential expression patterns in response to abscisic acid, gibberellic acid, and abiotic stresses.<ref name="ref1" /> |
| | + | ===Evolution=== |
| | + | * Proteoglycans or glycoproteins are basal components of the cell wall implicated in various processes of plant growth and development throughout the plant kingdom. A large number of these proteins are rich in proline (Pro) or hydroxyproline (Hyp) and are named Pro-rich/Hyp-rich glycoproteins (P/HRGPs). <ref name="ref1" /> |
| | + | * The P/HRGPs share common features that consist of regions containing Hyp residues, which are called ‘glycomodules’ and in which most Hyp residues are usually glycosylated by a large branched arabinogalactan (AG) polysaccharide or by small non-branched arabinooligosaccharides (arabinosides).<ref name="ref1" /> |
| | + | You can also add sub-section(s) at will. |
| | + | ==Labs working on this gene== |
| | + | * Key Laboratory of the Ministry of Education for Plant Developmental Biology, College of Life Sciences, Wuhan University, Wuhan 430072, PR China |
| | + | ==References== |
| | + | <references> |
| | + | * <ref name="ref1"> |
| | + | Ma H, Zhao J. Genome-wide identification, classification, and expression |
| | + | analysis of the arabinogalactan protein gene family in rice (Oryza sativa L.). J |
| | + | Exp Bot. 2010 Jun;61(10):2647-68. doi: 10.1093/jxb/erq104. Epub 2010 Apr 27. |
| | + | PubMed PMID: 20423940; PubMed Central PMCID: PMC2882264. |
| | + | </ref> |
| | + | * <ref name="ref2"> |
| | + | Seifert GJ, Roberts K. The biology of arabinogalactan proteins. Annu Rev Plant |
| | + | Biol. 2007;58:137-61. Review. PubMed PMID: 17201686. |
| | + | </ref> |
| | + | </references> |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| + | ==Structured Information== |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 6]] |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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| − | clade; Ehrhartoideae; Oryzeae; Oryza.
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| − | |
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| − | Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|
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| − | AP = Chromosome 6:29325903..29333564|
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| − | CDS = 29325903..29325979,29326226..29326968,29330322..29331048,29331621..29331886,29332678..29333564<br>|
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| − | GCID = <gbrowseImage1>
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| − | name=NC_008399:29325903..29333564
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| − | source=RiceChromosome06
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| − | preset=GeneLocation
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| − | </gbrowseImage1>|
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| − | GSID = <gbrowseImage2>
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| − | name=NC_008399:29325903..29333564
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| − | source=RiceChromosome06
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| − | preset=GeneLocation
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| − | </gbrowseImage2>|
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| − | CDNA = <cdnaseq>atggcgtacgcgcaggcgcagcagcagcaaccgcagtacggcttccaccctcaggcgccgccgccgccgccgcagtacccgcaccacccgccgccctacgccgcgccgctccctcagtacgcgccctacgcgcgcggcatgccgcccccgcaggcccagcagctctactcgcacctcccgccgcaccagcagcctccccacttcgccgcgcacgccatgccgtcgccctccccgccgccgccccaccccgcctacatgcacccgccgccgttcgactccgcgccaccccccgccgcggccccgcccccctccgacccggagctccagaagcgcatcgacaaggtcgtcgagtacatcgcgaagaacgggcccgagttcgaggtcgtgatccgcgacaagcagcacgacaacccggactacgccttcatcttcggcggcgagggccacgcctactacaggtacaagctctgggtctcgccgcggccgccggtggcgccgtaccctcccgggtcgatgcacatgatgccgccgccgctgggtccgatgatgcgtgggccgccgatgcaccagccgggttacccaccgttctacgaccagcaccagcatttcggtgctcacggccatggggagtatgatgccgcgccgcagcaatccttcaagggcctctccgggccgcttccggtggatgtcgcagctgagctgcacgacgtgcttaccaatctcaatggcaccaaggagtcgatcaagggtgccaagacatggttcatgcaaaggtcgccgttcgcgccggctttggctgaagctctgaaggatagagtgtttgctttagaggattcggagaggcagctccacattatcttcctggttaacgatattcttttcgaaagcttacaaagacgaactaattctcgggaccttgacaatgaggctttggcttttaaatttgtgctgggatcaatgcttgcaaggatatataacaatccacagagcaaagatgataaccagattcgcctcgagaaaatcctgcagttctggggttcaaaggaagtttatgaccaggaaaccattgctaaccttgaaagagacatgaaaggtggggtagcatatcctttgccaccacggcatgtctcaccggatccctcaacattttcaggatcagtgcatcagccctcaaaatggtcctcagatccacaagaggaaatggcaacccatcctctttctgttccaccccaacctgtgccttctgcacaatttccattaaatcaacttccagctggtgtttaccctcctgtaggtcaaactgcttttccaggatctttgccagtgcaaacccccactgtgctgcctcaaactgctgctacaccagctatcacaaatgatccaaatccacctccttatccactattcccccctggtctgattccaggaatggtgcgaaagatgcagatcgggagtggagtgccatactctcccctgagtccacttgacatccccacaatcattccaccatccactattccggagtccgagatccttgagcgtgtatcgaagttctttaaggagattggagaggtaaacccatcagaagggccaatgaagcaaagcgagcccgatgattacgataactatgagagggacattcctgctcgcaagggtggtgcatgtattcctcccccacccaacttgcttgtaaaccttgagacagggatgcgtgcagatggttcggttgatagtaaaccggggtcaactggccgattgggccttggagcgtctgccgatccaaatgagatcggccagtatgatgatgtctactcttcatatcgcaaacagaggagcagtacataccactcttccatcagtgctcgctcattagcaccaaaaatggcgccgtcgtccaagctcgccgccctcttcttcgccttcgccgtcgtggcggcggcggcgctggcaccggccgcagaagcgagggtccaagggttcaaccatgaagcggcgtccgagcctgccattgccgcagccggggagtccaaagctgccaccggaggaggagcgccgacattgccgggattacccggcttgccgttcccgctcttcccgttcctcacgctcccgttcccgctgatccccatcggcggctcttctggcggcggcggcgccgctccgccttcggctggctctggcttccggttcccgttcccgctcccgctgccgttccctgcgcccgcctcgccgggcggcgctccgccgtcgtctgggtccggcttcccggcgttcccgttcccgttccccagctcgccggtctcgccaccgtctcaagcatcacccgcctcgccggcggcaccggcgccgccatcgccgccgcagccaaaggagtgcttgacgccgctgttgtcgatgatgtcgtgcgcggactacctgacgaacagcagcgcgcagacgccgccgggcacctgctgcgaggggttcaagtcgctggtgagcacggcgcccatctgcctgtgccacggcatcaatggcgacctgagcaagttcctcccgctccccgtcgacatgatgaagatgatgacgctccccaacacctgcggcgccacggtcccacttcagacgttctccatgtgcaacacgccctcggtgcctccattgatgcctcagagcccatctgctgctgctccagcgcctggtagtcccccatcgtcgtaa</cdnaseq>|
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| − | AA = <aaseq>MAYAQAQQQQPQYGFHPQAPPPPPQYPHHPPPYAAPLPQYAPYA RGMPPPQAQQLYSHLPPHQQPPHFAAHAMPSPSPPPPHPAYMHPPPFDSAPPPAAAPP PSDPELQKRIDKVVEYIAKNGPEFEVVIRDKQHDNPDYAFIFGGEGHAYYRYKLWVSP RPPVAPYPPGSMHMMPPPLGPMMRGPPMHQPGYPPFYDQHQHFGAHGHGEYDAAPQQS FKGLSGPLPVDVAAELHDVLTNLNGTKESIKGAKTWFMQRSPFAPALAEALKDRVFAL EDSERQLHIIFLVNDILFESLQRRTNSRDLDNEALAFKFVLGSMLARIYNNPQSKDDN QIRLEKILQFWGSKEVYDQETIANLERDMKGGVAYPLPPRHVSPDPSTFSGSVHQPSK WSSDPQEEMATHPLSVPPQPVPSAQFPLNQLPAGVYPPVGQTAFPGSLPVQTPTVLPQ TAATPAITNDPNPPPYPLFPPGLIPGMVRKMQIGSGVPYSPLSPLDIPTIIPPSTIPE SEILERVSKFFKEIGEVNPSEGPMKQSEPDDYDNYERDIPARKGGACIPPPPNLLVNL ETGMRADGSVDSKPGSTGRLGLGASADPNEIGQYDDVYSSYRKQRSSTYHSSISARSL APKMAPSSKLAALFFAFAVVAAAALAPAAEARVQGFNHEAASEPAIAAAGESKAATGG GAPTLPGLPGLPFPLFPFLTLPFPLIPIGGSSGGGGAAPPSAGSGFRFPFPLPLPFPA PASPGGAPPSSGSGFPAFPFPFPSSPVSPPSQASPASPAAPAPPSPPQPKECLTPLLS MMSCADYLTNSSAQTPPGTCCEGFKSLVSTAPICLCHGINGDLSKFLPLPVDMMKMMT LPNTCGATVPLQTFSMCNTPSVPPLMPQSPSAAAPAPGSPPSS</aaseq>|
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| − | DNA = <dnaseqindica>7586..7662#6597..7339#2517..3243#1679..1944#1..887#atggcgtacgcgcaggcgcagcagcagcaaccgcagtacggcttccaccctcaggcgccgccgccgccgccgcagtacccgcaccacccgccgccctacgccgcgccgctccctcagtacgcgccctacgcgcgcggcatgccgcccccgcaggcccagcagctctactcgcacctcccgccgcaccagcagcctccccacttcgccgcgcacgccatgccgtcgccctccccgccgccgccccaccccgcctacatgcacccgccgccgttcgactccgcgccaccccccgccgcggccccgcccccctccgacccggagctccagaagcgcatcgacaaggtcgtcgagtacatcgcgaagaacgggcccgagttcgaggtcgtgatccgcgacaagcagcacgacaacccggactacgccttcatcttcggcggcgagggccacgcctactacaggtacaagctctgggtctcgccgcggccgccggtggcgccgtaccctcccgggtcgatgcacatgatgccgccgccgctgggtccgatgatgcgtgggccgccgatgcaccagccgggttacccaccgttctacgaccagcaccagcatttcggtgctcacggccatggggagtatgatgccgcgccgcagcaatccttcaagggcctctccgggccgcttccggtggatgtcgcagctgagctgcacgacgtgcttaccaatctcaatggcaccaaggagtcgatcaagggtgccaagacatggttcatgcaaaggtcgccgttcgcgccggctttggctgaagctctgaaggatagagtgtttgctttagaggattcggagaggcagctccacattatcttcctggttaacgatattcttttcgaaaggtatagcttcgatcggcatctgcttttggtatagaattgctatcctctgctgatgtgaaatgaaggcacgctgtctgatctgattgactgaataaatcacatgatacgatgaagaaagcaagaaaacattcctgctgcaaagatatctatttgcctaatatttagcaactcctttcatggtactagttaggacttaggactacttgtttaatcctttgtccaacatggagatgaatgtctttaggtgtttgttggtccttcaaaaactttgcgatgaactgaggtttattcctagtagatctgttatgtcatatgttcttttcctgaaagtcaattctgttttagcttgtgcttatatccatttgtcaggagggtccataatcagatcttagcttctacataatgtaaattaacattagaataatttgattcatcaagatgttagcaatagcaaaatcagctcattgcagacaacaatgttgaagctagcatctgaggataaaattcaaatgcaatgcatgttttatcaataatagcatgaatgcttgatgatgatatttctgctatatgttgtcaatgtttgatgataggtcatatggatcagtagatcgctttggtttgtatcactcattgtactgttttattgataccttttgtgcatttgatctggagaagctgattgtggcatgaaatctttattaattaaattaatatgtcacgactacatgacctttaatcgtttgtttttacatattcctggtcctttgctgaccatgttcgatctgctgcagcttacaaagacgaactaattctcgggaccttgacaatgaggctttggcttttaaatttgtgctgggatcaatgcttgcaaggatatataacaatccacagagcaaagatgataaccagattcgcctcgagaaaatcctgcagttctggggttcaaaggaagtttatgaccaggaaaccattgctaaccttgaaagagacatgaaaggtggggtagcatatcctttgccaccacggcatgtctcaccggatccctcaacattttcaggtgtgtcctctctctttttccatctttcctattattttatgtctgtacatgttgtctacattgaccagcacatttttctcatgtgagttcataaagttttaaggtgttagttttggcataaggattttgtttgtagttttgtgctattgtccttacttcttttgattggataactttttttttctcgaatactgatcagattactctcatgattgttatgtttatatgttaatgcctaaaaaataactttgtaagttggtatgtttgaagtatgtcggcagttcgctaaatttcaccatgcaacagttatctctacttaaatacctttgaagttcactcttattaatatgttcatataactagaaaaatcaactattagcttcttgtctgtttgttatttcctaattaaaccattgtacagattgagtccttttattttcttaatttaattattgtagaaatagatttgttgtggcatcatttctttgcaatactactaacttttatatgtatacaatggaccttttgctttttggaggtaaacctaaatacgcggttggatgttatttcaggatcagtgcatcagccctcaaaatggtcctcagatccacaagaggaaatggcaacccatcctctttctgttccaccccaacctgtgccttctgcacaatttccattaaatcaacttccagctggtgtttaccctcctgtaggtcaaactgcttttccaggatctttgccagtgcaaacccccactgtgctgcctcaaactgctgctacaccagctatcacaaatgatccaaatccacctccttatccactattcccccctggtctgattccaggaatggtgcgaaagatgcagatcgggagtggagtgccatactctcccctgagtccacttgacatccccacaatcattccaccatccactattccggagtccgagatccttgagcgtgtatcgaagttctttaaggagattggagaggtaaacccatcagaagggccaatgaagcaaagcgagcccgatgattacgataactatgagagggacattcctgctcgcaagggtggtgcatgtattcctcccccacccaacttgcttgtaaaccttgagacagggatgcgtgcagatggttcggttgatagtaaaccggggtcaactggccgattgggccttggagcgtctgccgatccaaatgagatcggccagtatgatgatgtctactcttcatatcgcaaacagaggagcagtacataccactcttccatcagtgctcgctcattagcaccaaagtgaacggcagaagcatcatatgaaccctttcctcatctgtgtaggactgtacttaaatgaacagaattggcttatcaaatgattgtacgatgcaactatgtattgtcaccagtagcaaatgatgtttcttccagtatcttcttgtaagaggggttttgatcgagctgattttgttggcgtttttagttcagatttggagttgatattctttccaagcttccagtcctaaaatgtggcttcagtcactgggacaggattgctgctcagtaaaaatatgttttctcatgtacaaaacttgtatccttgtgagtttagtcatgtgaaattaacatcattagatttttcaccaaaagatattttcataccgtacttattaatttccacgcgcacattcaaatacatatcagttgtcaaagctgaacatcccaagtcaatctgtactttttttttgtggcacccatgttcagacattgcacgtacaggtgtatgctcatgcgaatatcaggagctgtattattatctcttggagataagcgaaactcttcagcgtagttcagattttcagaattctgatctattgcgaacagatgtatcagctccagacttcaccatgcctgtgtcgtagcaacgcatatattcaaatgagaacccatttgaatttattgttcaggactgcagagtcccatatcttcagtacagttatgataattacaggctgaattattacctctggacaacgacatacttctccttttttaggtgaactctgcggtttatctgaaaaaaaggatcaccttgttctcagaaattcataattactactcgagttatattatctgtttgaggcaacaagcaagcaaaaccagagatagagcttcatactggttggactcgctaaaattgttcagcctaatcctgaattcaaattattattacgaacagaagtattaaaacagagataagacttcatactggttgaagcttcagacttcatgtgccgtaacgatggctctctttccacgtatgtaatttgagatcgtcaggattgcagactgtatttacaatcgccaaatgaaaacagagataagaaaacatcaatccaattatccaaagttggatatatgctacctgcctaattagtagaagagtaataagttcgtttgacatatgcttacctgcttaatcacgtacgaaaatcggtccaaagttcaatctggttacatgaaaattcaaactaaaatctgctttacgtacgagaaattcatcctgagtccaatcttattacacgaacatttcaaactccaaatctctacattctaacgctatggttgtctggtctggtccttggtcgtgtcccgtttcattgtgtactatttacctgtaatgtgtatccttaagtctggtttgatggtgtctgaaacgttttgctgtggtagagcagcatggaagaactataatgaataagtgatccctaatcattgtgtccaaattttgcttctgctatacccttttgtgctgtttcttatgttttgcttaaaaatttgatctgacaaacaaatttgtctaaattatgctcttgttctgactgtgtactgtacacatttgtattgctaccggtttggcacatagttttctctttgattgcagatcaaacccttctgattgcagattgcttggctatggctgatgtgctcactgttcttctttagcttgtatattgctgatggtggcttggctacggctgaaaaagttgctgctgcgccgacttggcaactgttgctccagtaatgctttgtcctctcttcctagccgccgacttggcacttggcagctgttgctcctgtaatgcgttgttatctcttatctcttgagatgtactatgattttgaggctgtttgacttgtgccagattgccagtgctgatgctatattatctcaggtttttatgctagtatatgttttactgtgtgctgcctgtgtcgagttacgtaatctattgaaccgctatgcgtgttgatgccctgttgttgcttgccagattgatgcccctgttgcttgcagcttgcaagctgtagtgaaatcctaaaattcgaagccaaatctattctgaacttttgaagatctgtgatgtccggaagaaaagattcaaacagataaacgggactctccagaatctataaaataaatgatcgacaaacgctttgctttggtaggcttctcattaacccaaacattctggaagaccaatgctggaggaaaacatagaaaaaaaactctctgttcccataaaagaaatagtactccggtttatctaaaaatatgaagaattctgtgttttcaatatcaatctaaattcagaatagctagaagctgtgtgatctggaagacaagcgaacccagagatagaacttcacactgattggactcatcaaaattcttgtgtttggtttaaatctctggtttattacaaacagaagtatcagctccagacttcatcacgcaattgccgtaactatgcatatatgatatatccaaatgacgagacggcatttatttgttcaggactgcagagtcccgtatcttcagtatagttctgataattacaaattgaagttttaactctggacaacgacatacttttcttttttgaggtaaaacaaaggaatactctgcggtttatctgaaaaaaaagagttatatgtcctcaatatcaccagaaattaagaattattactactacgagcttatattatctcttcgaggcaatcaaaacaaaagagacagcttcacactggttggactcgcaaaaattgttcagccagcgtaatccagaattcagataagtatcaggacgaagtattagcttcagactccatgtgccgtaacaatggcgttctcctctcctcctgtgtgtatgaaaacaactgcaaacttacaaattctgtcaacttatatctgaaaatttgaaaaatttcacccatgtagtttgagatcgtcaggattgcaggctgtatcatgatgttctctattgcatccttaacgttaaacgaaagcacagatgagaaaacatcatacactttgcacccgtaataagttcattagatatctcttaatcacgtacgaaaatcagtcgagagttcaatctcgttacatgaacgttcaaactaaaatctgcttttacgtacaagaaattaatccagagtccaatcttattacacgaacattcaaactccaaatctctacattctaacgctataaattgcgagcgatcccacgttgctctgcacaacaatcagccaaagccgcaacaccaatctcaccacccaccaccgatctctcgccgacgagacagaatggcgccgtcgtccaagctcgccgccctcttcttcgccttcgccgtcgtggcggcggcggcgctggcaccggccgcagaagcgagggtccaagggttcaaccatgaagcggcgtccgagcctgccattgccgcagccggggagtccaaagctgccaccggaggaggagcgccgacattgccgggattacccggcttgccgttcccgctcttcccgttcctcacgctcccgttcccgctgatccccatcggcggctcttctggcggcggcggcgccgctccgccttcggctggctctggcttccggttcccgttcccgctcccgctgccgttccctgcgcccgcctcgccgggcggcgctccgccgtcgtctgggtccggcttcccggcgttcccgttcccgttccccagctcgccggtctcgccaccgtctcaagcatcacccgcctcgccggcggcaccggcgccgccatcgccgccgcagccaaaggagtgcttgacgccgctgttgtcgatgatgtcgtgcgcggactacctgacgaacagcagcgcgcagacgccgccgggcacctgctgcgaggggttcaagtcgctggtgagcacggcgcccatctgcctgtgccacggcatcaatggcgacctgagcaagttcctcccgctccccgtcgacatgatgaagatgatgacgctccccaacacctgcggcgccacggtcccacttcagacgttctccatgtgcaacagtaagttcttgctaatcaaattacaccctaattaaaccctatcgtaaagcatgtttattatttctaatgcattgtttgtttgaagataacataatccatcgtaaaaacatgttttgtttttatgcattgtttctttgattgaagagattagtataaaccatcatgaaacatgtttattttttcatgcattgcttgtttgatgaagagattaattaatctaatctggtgttttgtttgatttgacagcgccctcggtgcctccattgatgcctcagagcccatctgctgctgctccagcgcctggtagtcccccatcgtcgtaa</dnaseqindica>|
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| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001188030.1 RefSeq:Os06g0682750]|
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| − | }}
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| − | [[Category:Genes]] | |
| − | [[Category:Japonica mRNA]]
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| − | [[Category:Oryza Sativa Japonica Group]] | |
| − | [[Category:Japonica Genes]] | |
| − | [[Category:Japonica Chromosome 6]]
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| − | [[Category:Chromosome 6]]
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