Difference between revisions of "Os03g0161900"

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(Created page with "{{JaponicaGene| GeneName = Os03g0161900| Description = Similar to Heat shock factor 1 (Fragment)| Version = NM_001055582.1 GI:115450892 GeneID:4331708| Length = 2280 bp| ...")
 
 
(2 intermediate revisions by 2 users not shown)
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{{JaponicaGene|
+
The rice '''''Os03g0161900''''' was reported as '''''OsHsf-08''''' in 2008 <ref name="ref1" /> by researchers from China.
GeneName = Os03g0161900|
+
==Annotated Information==
Description = Similar to Heat shock factor 1 (Fragment)|
+
===Gene Symbol===
Version = NM_001055582.1 GI:115450892 GeneID:4331708|
+
*'''''Os03g0161900''''' '''''<=>''''' '''''OsHsf-08'''''
Length = 2280 bp|
+
===Function===
Definition = Oryza sativa Japonica Group Os03g0161900, complete gene.|
+
* The heat shock transcription factors (HSFs) are the major heat shock factors regulating the heat stress response.
Source = Oryza sativa Japonica Group
+
* The heat shock transcription factors (HSFs) participate in regulating the expression of heat shock proteins (HSPs), which are critical in the protection against stress damage and many other important biological processes.
 +
===Expression===
 +
* Expression data analysis indicates that HSF proteins are widely expressed in plants.
 +
===Evolution===
 +
* Phylogenetic analyses resulted in the identification of three major clusters of orthologous genes that contain members belonging to both species, which must have been represented in their common ancestor before the taxonomic splitting of the angiosperms.
 +
You can also add sub-section(s) at will.
 +
==Labs working on this gene==
 +
* School of Life Sciences, Shanghai University, Shanghai 200444, China
 +
* College of Light Industry and Food Sciences, South China University of Technology, Guangzhou 510640, China
 +
==References==
 +
<references>
 +
* <ref name="ref1">
 +
Guo J, Wu J, Ji Q, Wang C, Luo L, Yuan Y, Wang Y, Wang J. Genome-wide analysis
 +
of heat shock transcription factor families in rice and Arabidopsis. J Genet
 +
Genomics. 2008 Feb;35(2):105-18. doi: 10.1016/S1673-8527(08)60016-8. PubMed PMID:
 +
18407058.
 +
</ref>
 +
</references>
  
  ORGANISM  Oryza sativa Japonica Group
+
==Structured Information==
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
+
    [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 3]]
            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
 
            clade; Ehrhartoideae; Oryzeae; Oryza.
 
|
 
Chromosome = [[:category:Japonica Chromosome 3|Chromosome 3]]|
 
AP = Chromosome 3:3320590..3322869|
 
CDS = 3320667..3320954,3321062..3321121,3321901..3322692|
 
GCID = <gbrowseImage1>
 
name=NC_008396:3320590..3322869
 
source=RiceChromosome03
 
preset=GeneLocation
 
</gbrowseImage1>|
 
GSID = <gbrowseImage2>
 
name=NC_008396:3320590..3322869
 
source=RiceChromosome03
 
preset=GeneLocation
 
</gbrowseImage2>|
 
CDNA = <cdnaseq>atggagaagatgatgccggggatggtgaaggaggagtggccgccgagctcgccggaggagggggaggcgccgaggcccatggaggggctgcacgaggtcgggccgccgccgttcctgaccaagacgttcgacctggtggccgacccggccaccgacggcgtcgtctcgtggggccgcgcgggcagcagcttcgtcgtctgggacccccacgtcttcgccgccgtcttcctcccacgcttcttcaagcacaacaatttctccagcttcgtccgccagctcaacacctacttcttggtccggacgaattacctgaacaagcgatcacatttctacagtttgagatttcagggtttcagaaagattgatcctgacagatgggaattcgcgaatgatggtttcctgagaggccagaggcatcttctaaagatgattaagaggaggagaccattgtcttatctccctggatctcagcaggcacttggcacctgccttgaggttggtcagttcggattagatgaagagatcgacaggctaaagcgtgacaagaacatcttactcgcggaggttgtgaaactaaggcacaagcagcaaagcacgaaagccaatatgcgagccatggaagagaggctgcaacatgcggagcagaagcaggtccagatgatgggtttcttggcaagagcaatgcagaaccctgacttctttcaccagttgattcaccagcaggataaaatgaaggggctcgaggacacattctcgaagaagaggacgaggtcgatagacatagtgccatttctcaaccccggggaggtcagccagggcgatcaactcgagtcgacattgctgtttgatccaaggccatttgctgaactgaatgatgagcctgcaaagtctgaactggagaatttagcactgaacatccagggtcttgggaagggcaagcaggatgtcaacaggactcgaaatcagccacgaaatcaggctagcaacgaaaccgagttaaccgacgacttctgggaggagcttctgaatgaaggagcaagagatgatgctgggattccagggatggagcgaagaagacctagatatgtcgatgcattagcgcagaagctgggttatctaagcaatagtagccaaaagtag</cdnaseq>|
 
AA = <aaseq>MEKMMPGMVKEEWPPSSPEEGEAPRPMEGLHEVGPPPFLTKTFD                    LVADPATDGVVSWGRAGSSFVVWDPHVFAAVFLPRFFKHNNFSSFVRQLNTYFLVRTN                    YLNKRSHFYSLRFQGFRKIDPDRWEFANDGFLRGQRHLLKMIKRRRPLSYLPGSQQAL                    GTCLEVGQFGLDEEIDRLKRDKNILLAEVVKLRHKQQSTKANMRAMEERLQHAEQKQV                    QMMGFLARAMQNPDFFHQLIHQQDKMKGLEDTFSKKRTRSIDIVPFLNPGEVSQGDQL                    ESTLLFDPRPFAELNDEPAKSELENLALNIQGLGKGKQDVNRTRNQPRNQASNETELT                    DDFWEELLNEGARDDAGIPGMERRRPRYVDALAQKLGYLSNSSQK</aaseq>|
 
DNA = <dnaseqindica>78..365#473..532#1312..2103#gcgccactctcgctgactcgctcgctgccaagctcgccggattcttttcttggattggagcagattggggggtgacgatggagaagatgatgccggggatggtgaaggaggagtggccgccgagctcgccggaggagggggaggcgccgaggcccatggaggggctgcacgaggtcgggccgccgccgttcctgaccaagacgttcgacctggtggccgacccggccaccgacggcgtcgtctcgtggggccgcgcgggcagcagcttcgtcgtctgggacccccacgtcttcgccgccgtcttcctcccacgcttcttcaagcacaacaatttctccagcttcgtccgccagctcaacacctacgtgagtccccccaatttccattgccaccactagtgttgttccctgcttgtcttcagttgttgggaaattgtgtgttctgttttcttgttttggatgttgttgttcagttcttggtccggacgaattacctgaacaagcgatcacatttctacagtttgagatttcaggttggattgttagataattaaaatgggtgtgttctcacttttgtggttgccattatgttttgtgccacatcgtgtgtgttgagtattgataggaatcttgacactagaattaaatggatggagcattgtaaaattttcagtgcaaattgtaaacccggcggtattggttaaataaatcggttgtattgtgcatttttccactcagtgcaagaactttgtgcatgcacaaatgcacaattatgtagcaatggagctagaaactgggatttacttattggtgctgacctgttggttgtagaaaattacgatggctacaattgttcaacggactgttttgtggacttgacattatttgcccaaactcagctatgtccaatccttttcagacacatgcatataaaccctcaattcctgaaatgttctcaatgattcagaaagaggaaaaaaatctccatggacgaactactcagtttctgacatgctgttttcttcaatttgttactgtgtagctagatggatcaagacagcggatgaagctacaagaatctgcttgtttgttctagaagactcctttgatcaccatcaaaaaaaagaaaaagtgatgtagtatactgctacctgttctcttaataatgctatgataaattttgtcgcaaaactatgtgaaaccaaccgttttacatactttgtgtgacttgctatcctaattgagttttgtctgtggcttctgtacttgaactaactatacctgtaatattctttgtgtttgcaatttgcagggtttcagaaagattgatcctgacagatgggaattcgcgaatgatggtttcctgagaggccagaggcatcttctaaagatgattaagaggaggagaccattgtcttatctccctggatctcagcaggcacttggcacctgccttgaggttggtcagttcggattagatgaagagatcgacaggctaaagcgtgacaagaacatcttactcgcggaggttgtgaaactaaggcacaagcagcaaagcacgaaagccaatatgcgagccatggaagagaggctgcaacatgcggagcagaagcaggtccagatgatgggtttcttggcaagagcaatgcagaaccctgacttctttcaccagttgattcaccagcaggataaaatgaaggggctcgaggacacattctcgaagaagaggacgaggtcgatagacatagtgccatttctcaaccccggggaggtcagccagggcgatcaactcgagtcgacattgctgtttgatccaaggccatttgctgaactgaatgatgagcctgcaaagtctgaactggagaatttagcactgaacatccagggtcttgggaagggcaagcaggatgtcaacaggactcgaaatcagccacgaaatcaggctagcaacgaaaccgagttaaccgacgacttctgggaggagcttctgaatgaaggagcaagagatgatgctgggattccagggatggagcgaagaagacctagatatgtcgatgcattagcgcagaagctgggttatctaagcaatagtagccaaaagtagatcaagtggctccgatttgtccaaccatttttgtgatagctcttattgtatatcggtgtaattgtattatagtgatagttttatagcgataggtccaatttatattgcggatccggcgtgctgtgtagtatatgtctggtgatgtaaagttgagccatcattcttaatggtatatat</dnaseqindica>|
 
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001055582.1 RefSeq:Os03g0161900]|
 
}}
 
[[Category:Genes]]
 
[[Category:Japonica mRNA]]
 
[[Category:Oryza Sativa Japonica Group]]
 
[[Category:Japonica Genes]]
 
[[Category:Japonica Chromosome 3]]
 
[[Category:Chromosome 3]]
 

Latest revision as of 03:42, 1 April 2017

The rice Os03g0161900 was reported as OsHsf-08 in 2008 [1] by researchers from China.

Annotated Information

Gene Symbol

  • Os03g0161900 <=> OsHsf-08

Function

  • The heat shock transcription factors (HSFs) are the major heat shock factors regulating the heat stress response.
  • The heat shock transcription factors (HSFs) participate in regulating the expression of heat shock proteins (HSPs), which are critical in the protection against stress damage and many other important biological processes.

Expression

  • Expression data analysis indicates that HSF proteins are widely expressed in plants.

Evolution

  • Phylogenetic analyses resulted in the identification of three major clusters of orthologous genes that contain members belonging to both species, which must have been represented in their common ancestor before the taxonomic splitting of the angiosperms.

You can also add sub-section(s) at will.

Labs working on this gene

  • School of Life Sciences, Shanghai University, Shanghai 200444, China
  • College of Light Industry and Food Sciences, South China University of Technology, Guangzhou 510640, China

References

  1. Guo J, Wu J, Ji Q, Wang C, Luo L, Yuan Y, Wang Y, Wang J. Genome-wide analysis of heat shock transcription factor families in rice and Arabidopsis. J Genet Genomics. 2008 Feb;35(2):105-18. doi: 10.1016/S1673-8527(08)60016-8. PubMed PMID: 18407058.

Structured Information