Difference between revisions of "Os11g0454000"

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The description of the rice '''Os11g0454000'''gene is the  ''rab 16c'' gene. The  ''rab 16c'' is ABA response protein.Therefore, the rice '''Os11g0454000'''gene is a functional gene in response to abiotic stresses, such as drought and salt.
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The rice '''''Os11g0454000''''' was reported as '''''rab16C''''' in 1990 by researchers from Japan.  
 
==Annotated Information==
 
==Annotated Information==
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===Gene Symbol===
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*'''''Os11g0454000''''' '''<=>''' '''''OsLEA27, rab16C, rab21'''''
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===Function===
 
===Function===
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Drought and salt are two adverse factors affecting seriously growth, development, and productivity of rice. when subjecting rice to drought and salt as stresses, plants increase ABA sensitivity in rice . The  ''rab 16c'' gene and other functional genes are expression in a high level to response to the stresses.
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* The  '''''rab16c''''' is ABA response protein. It is a functional gene in response to abiotic stresses, such as drought and salt.
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The expression of ''rab 16c''is controlled by ABA which appears to mediate important physiological and developmental processes in plants. These include embryo morphogenesis and germination in seeds as well
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* The  ''rab 16c'' gene and other functional genes are expression in a high level to response to the stresses.
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as stomatal function and the response of plant tissues to osmotic stress.
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* The expression of ''rab 16c''is controlled by ABA which appears to mediate important physiological and developmental processes in plants. These include embryo morphogenesis and germination in seeds as well as stomatal function and the response of plant tissues to osmotic stress.
 +
 
 
===Expression===
 
===Expression===
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Its expression is not tissue specific high in ABA-treated seedlings and roots and  responsive to osmotic stress. Its mRNA accumulates to detectable levels in mature embryos.
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* Its expression is not tissue specific high in ABA-treated seedlings and roots and  responsive to osmotic stress.  
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* Its mRNA accumulates to detectable levels in mature embryos.
  
 
===Evolution===
 
===Evolution===
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Two types of conserved DNA sequence motifs are found in the promoter regions of the ''rab 16C'' genes . The core of Motif I (PuTACGTGGCPu), reminiscent of the cAMP response element (TGACGTA [5]), appears to be conserved in the promoter regions of several cotton lea genes. The
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* Two types of conserved DNA sequence motifs are found in the promoter regions of the ''rab 16C'' genes.  
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core of Motif II (CGG/CCGCGCT), found once in ''rab 16C'', is 80% homologous with the binding site of SP1, an auxilliary transcription factor . These elements may play a role in modulating the transcriptional activation in the rab genes.Another conserved sequence, whose core is found in the promoter regions of ABA-responsive cotton genes, is reminiscent of the cAMP responsive element.
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* The core of Motif I (PuTACGTGGCPu), reminiscent of the cAMP response element (TGACGTA [5]), appears to be conserved in the promoter regions of several cotton lea genes.  
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Ose717 shared a 91% homology with the 140 nucleotide coding sequences of a rice ABA response gene, ''rab16C''. The high degree of homology within the coding region implied that the genes were closely related.
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* The core of Motif II (CGG/CCGCGCT), found once in ''rab 16C'', is 80% homologous with the binding site of SP1, an auxilliary transcription factor.  
 +
* These elements may play a role in modulating the transcriptional activation in the rab genes.Another conserved sequence, whose core is found in the promoter regions of ABA-responsive cotton genes, is reminiscent of the cAMP responsive element.
 +
* Ose717 shared a 91% homology with the 140 nucleotide coding sequences of a rice ABA response gene, ''rab16C''. The high degree of homology within the coding region implied that the genes were closely related.
  
 
You can also add sub-section(s) at will.
 
You can also add sub-section(s) at will.
  
 
==Labs working on this gene==
 
==Labs working on this gene==
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Please input related labs here.
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* Laboratory  of Plant Molecular  Biology,  Rockefeller  University,  1230 York Avenue, New York, NY 10021, USA
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* Department of Biotechnology, Carlsberg Research  Laboratory, GI. Carlsberg  Vej 10, DK-2500 Valby, Copenhagen, Denmark
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* Department of Cell Biology,  National Institute of Agrobiological  Resources,  Yatabe, Ibaraki 305, Japan
  
 
==References==
 
==References==
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[1]Yamaguchi-Shinozaki, K., J. Mundy, and N.H. Chua. Four tightly linked rab genes are differentially expressed in rice. Plant Mol. Biol.(1990) 14: 29_39.
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* [1]Yamaguchi-Shinozaki, K., J. Mundy, and N.H. Chua. Four tightly linked rab genes are differentially expressed in rice. Plant Mol. Biol.(1990) 14: 29_39.
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[2]Peng-Wen Chen1, Li-Wen Fang2, Juey-Wen Lin3, et al.Isolation of cDNA clones for genes that are specifically expressed in the rice embryo.Bot. Bull. Acad. Sin. (1997) 38: 13-20.
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[3]Hao-Wen Li, Bai-Sheng Zang, Xing-Wang Deng,et al.Overexpression of the trehalose-6-phosphate synthase gene OsTPS1 enhances abiotic stress tolerance in rice.Planta (2011) 234:1007–1018.
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* [2]Peng-Wen Chen1, Li-Wen Fang2, Juey-Wen Lin3, et al.Isolation of cDNA clones for genes that are specifically expressed in the rice embryo.Bot. Bull. Acad. Sin. (1997) 38: 13-20.
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[4]NÉLIDA OLAVE-CONCHA1, SIMÓN RUIZ-LARA2, XIMENA MUÑOZ1, et al.Accumulation of dehydrin transcripts and proteins in response to abiotic stresses in Deschampsia antarctica. Antarctic Science (2004)16 (2): 175–184.
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[5]John Mundy, Nam-Hal Chua. Abscisic acid and water-stress induce the expression of a novel rice gene.The EMBO Journal (1988) 7(8): 2279-2286.
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* [3]Hao-Wen Li, Bai-Sheng Zang, Xing-Wang Deng,et al.Overexpression of the trehalose-6-phosphate synthase gene OsTPS1 enhances abiotic stress tolerance in rice.Planta (2011) 234:1007–1018.
 +
 
 +
* [4]NÉLIDA OLAVE-CONCHA1, SIMÓN RUIZ-LARA2, XIMENA MUÑOZ1, et al.Accumulation of dehydrin transcripts and proteins in response to abiotic stresses in Deschampsia antarctica. Antarctic Science (2004)16 (2): 175–184.
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* [5]John Mundy, Nam-Hal Chua. Abscisic acid and water-stress induce the expression of a novel rice gene.The EMBO Journal (1988) 7(8): 2279-2286.
  
  
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[[Category:Japonica Chromosome 11]]
 
[[Category:Japonica Chromosome 11]]
 
[[Category:Chromosome 11]]
 
[[Category:Chromosome 11]]
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== Structured Information ==
 
== Structured Information ==

Latest revision as of 15:57, 6 May 2017

The rice Os11g0454000 was reported as rab16C in 1990 by researchers from Japan.

Annotated Information

Gene Symbol

  • Os11g0454000 <=> OsLEA27, rab16C, rab21

Function

  • The rab16c is ABA response protein. It is a functional gene in response to abiotic stresses, such as drought and salt.
  • The rab 16c gene and other functional genes are expression in a high level to response to the stresses.
  • The expression of rab 16cis controlled by ABA which appears to mediate important physiological and developmental processes in plants. These include embryo morphogenesis and germination in seeds as well as stomatal function and the response of plant tissues to osmotic stress.

Expression

  • Its expression is not tissue specific high in ABA-treated seedlings and roots and responsive to osmotic stress.
  • Its mRNA accumulates to detectable levels in mature embryos.

Evolution

  • Two types of conserved DNA sequence motifs are found in the promoter regions of the rab 16C genes.
  • The core of Motif I (PuTACGTGGCPu), reminiscent of the cAMP response element (TGACGTA [5]), appears to be conserved in the promoter regions of several cotton lea genes.
  • The core of Motif II (CGG/CCGCGCT), found once in rab 16C, is 80% homologous with the binding site of SP1, an auxilliary transcription factor.
  • These elements may play a role in modulating the transcriptional activation in the rab genes.Another conserved sequence, whose core is found in the promoter regions of ABA-responsive cotton genes, is reminiscent of the cAMP responsive element.
  • Ose717 shared a 91% homology with the 140 nucleotide coding sequences of a rice ABA response gene, rab16C. The high degree of homology within the coding region implied that the genes were closely related.

You can also add sub-section(s) at will.

Labs working on this gene

  • Laboratory of Plant Molecular Biology, Rockefeller University, 1230 York Avenue, New York, NY 10021, USA
  • Department of Biotechnology, Carlsberg Research Laboratory, GI. Carlsberg Vej 10, DK-2500 Valby, Copenhagen, Denmark
  • Department of Cell Biology, National Institute of Agrobiological Resources, Yatabe, Ibaraki 305, Japan

References

  • [1]Yamaguchi-Shinozaki, K., J. Mundy, and N.H. Chua. Four tightly linked rab genes are differentially expressed in rice. Plant Mol. Biol.(1990) 14: 29_39.
  • [2]Peng-Wen Chen1, Li-Wen Fang2, Juey-Wen Lin3, et al.Isolation of cDNA clones for genes that are specifically expressed in the rice embryo.Bot. Bull. Acad. Sin. (1997) 38: 13-20.
  • [3]Hao-Wen Li, Bai-Sheng Zang, Xing-Wang Deng,et al.Overexpression of the trehalose-6-phosphate synthase gene OsTPS1 enhances abiotic stress tolerance in rice.Planta (2011) 234:1007–1018.
  • [4]NÉLIDA OLAVE-CONCHA1, SIMÓN RUIZ-LARA2, XIMENA MUÑOZ1, et al.Accumulation of dehydrin transcripts and proteins in response to abiotic stresses in Deschampsia antarctica. Antarctic Science (2004)16 (2): 175–184.
  • [5]John Mundy, Nam-Hal Chua. Abscisic acid and water-stress induce the expression of a novel rice gene.The EMBO Journal (1988) 7(8): 2279-2286.

Structured Information

Retrieved from "https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os11g0454000&oldid=277868"