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| − | Please input one-sentence summary here.
| + | The rice '''''Os11g0523700''''' was reported as '''''OsICE1''''' in 2011 <ref name="ref1" /> by researchers from Japan. |
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| | ==Annotated Information== | | ==Annotated Information== |
| | + | [[File:Os11g0523700.png|right|thumb|327px|'''Figure 2.'''<ref name="ref1" />.'']] |
| | + | ===Gene Symbol=== |
| | + | *'''''Os11g0523700''''' '''''<=>''''' '''''ICE1, OsICE1, OsbHLH002''''' |
| | + | |
| | ===Function=== | | ===Function=== |
| − | This gene encodes a inducer of CBF expression 1 named ''OsICE1''.Cold stress on crops results in severe yield losses through growth retardation and irreversible damage. Recently, Inducer of CBF Expression 1 (ICE1) was identified as the master regulator inducing dehydration responsive element binding protein/C-repeat binding factor (DREB/CBF)-type transcriptional factors involved in the signaling of cold and osmotic stress in Arabidopsis. Chilling stress on rice seedlings induced two ICE-related proteins with molecular masses of approximately 55 and 40 kDa. ''OsICE'' homologs function in transcriptional regulation at upstream of a cold-stress-induced transcription factor cascade involving ''OsDREB1B'' and ''OsHsfA3'', leading to cold acclimation, possibly involving trehalose synthesis
| + | * The rice OsICE1 function in transcriptional regulation at upstream of a cold-stress-induced transcription factor cascade involving OsDREB1B and OsHsfA3, leading to cold acclimation, possibly involving trehalose synthesis<ref name="ref1" /> |
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| | ===Expression=== | | ===Expression=== |
| − | Cold stress had little or no effect on the expression of ''OsICE1'' and ''OsICE2''. Semi-quantitative RT-PCR indicated that both were constantly expressed, but that cold stress sequentially upregulated OsDREB1B, rice heat shock factor A3 (OsHsfA3), and trehalose-6-phosphate phosphatase (OsTPP1). Trehalose treatment enhanced the cold tolerance of seedlings. | + | * Cold stress had little or no effect on the expression of ''OsICE1'' and ''OsICE2''. |
| | + | * Semi-quantitative RT-PCR indicated that both were constantly expressed, but that cold stress sequentially upregulated OsDREB1B, rice heat shock factor A3 (OsHsfA3), and trehalose-6-phosphate phosphatase (OsTPP1).<ref name="ref1" /> |
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| − | ===Evolution=== | + | ==Labs working on this gene== |
| − | Please input evolution information here.
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| − | You can also add sub-section(s) at will.
| + | *Graduate School of Bioresource and Bioenvironmental Sciences, Kyushu University, Fukuoka 812-8581, Japan |
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| − | ==Labs working on this gene==
| + | *Department of Bioresource Sciences, Faculty of Agriculture, Kyushu University, Fukuoka 812-8581, Japan |
| − | Please input related labs here.
| + | |
| | + | *School of Agriculture, Kyushu University, Fukuoka 812-8581, Japan |
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| | ==References== | | ==References== |
| − | | + | <references> |
| − | 1. Junya Nakamura;Takashi Yuasa;Tran Thi Huong;Keisuke Harano;Sho Tanaka;Tomoe Iwata;Thuy Phan;Mari Iwaya. Rice homologs of inducer of CBF expression (OsICE) are involved in cold acclimation. Plant Biotechnology, 2011, 28(3): 303-309
| + | <ref name="ref1">Junya Nakamura;Takashi Yuasa;Tran Thi Huong;Keisuke Harano;Sho Tanaka;Tomoe Iwata;Thuy Phan;Mari Iwaya. Rice homologs of inducer of CBF expression (OsICE) are involved in cold acclimation. Plant Biotechnology, 2011, 28(3): 303-309</ref> |
| | + | </references> |
| | | | |
| | ==Structured Information== | | ==Structured Information== |
| − | {{JaponicaGene|
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| − | GeneName = Os11g0523700|
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| − | Description = Similar to Transcription factor ICE1 (Inducer of CBF expression 1) (Basic helix- loop-helix protein 116) (bHLH116) (AtbHLH116)|
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| − | Version = NM_001074519.2 GI:297611916 GeneID:4350609|
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| − | Length = 3209 bp|
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| − | Definition = Oryza sativa Japonica Group Os11g0523700, complete gene.|
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| − | Source = Oryza sativa Japonica Group
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| − | ORGANISM Oryza sativa Japonica Group
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| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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| − | clade; Ehrhartoideae; Oryzeae; Oryza.
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| − | |
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| − | Chromosome = [[:category:Japonica Chromosome 11|Chromosome 11]]|
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| − | AP = Chromosome 11:20749846..20753054|
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| − | CDS = 20749903..20750994,20751889..20752116,20752352..20752522,20752642..20752725|
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| − | GCID = <gbrowseImage1>
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| − | name=NC_008404:20749846..20753054
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| − | source=RiceChromosome11
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| − | preset=GeneLocation
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| − | </gbrowseImage1>|
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| − | GSID = <gbrowseImage2>
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| − | name=NC_008404:20749846..20753054
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| − | source=RiceChromosome11
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| − | preset=GeneLocation
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| − | </gbrowseImage2>|
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| − | CDNA = <cdnaseq>atgctgccgcggtttcacggcgccatgtggatgcaggacgacggcggcggcgaccaagaacacgggcaggcggcgccgcctgggcaggagcagcaccaccacgaccagcatctcatggcgttggcggccgcggccgcgggcggcgccgggttcggcgcggcgcaggcgccggcgccgctgctcgatgaggactggtacttcgacgcggcgggtggtggtggtggtggcgcgcatgggtccatgatgctgggtttgtcgtccgtccatggcgggattggggcggggacgtctggtggtgggcatgggcagcagttctcgctgctcaacatgggcgccgcggccgcgccgttcgacgtctccgggttcgacctcgggatcgcctgcggcggcgttggcggcggcggcgacgtggtgtcgtttcttggcggcgggaacgcgtcgaacaccgcgctgctccccgtcgggaacgcggggttcctcggcacgttcggcgggttcggcaccgcggcgtcccaaatgccggagttcggcgggctcgccgggttcgacatgttcgacgcgggcgccgtgaacaccgggggcagctcctcctcctcgtcggcggcggcggcggcggcgtccgcctcggcgcacgtgagcaacaccgcgccgttctccgggcgcggcaaggcggcggtgctgcggccgctggatatcgtcccgcccgtgggcgcgcagccgacgctgttccagaagcgcgcgctccgccgcaacgccggcgaggacgacgacgacaagaagcgcaaggccgccgcgggcgcgggcgcgggcgcgctgtccgccgacggcgccgacatggtgctcgacgacggcgacgacgacggcctcagcatcgacgcgtcgggcggcctcaactacgactccgaggacgccaggggcggcgaggacagcggcgccaagaaggagtcgaacgccaacagcacggtcaccggcgacgggaaggggaagaagaaggggatgccggccaagaacctcatggcggagcgccgccgccggaagaagctcaacgaccgcctctacatgctccgctccgtcgtgcccaagatcagcaagatggacagggcttccattctcggcgacgcgattgagtacctgaaggagctgctgcagaagatcaatgatcttcagaatgagctcgagtcgtcccccgcgacgtcgtcattgcctccaacacccacaagcttccatcccctgacaccgacgctgcccacattgccgtcccgcatcaaggaagagatctgcccaagtgcattgccaagccccactggacaacagccaagggttgaggttaggctgagggaaggccgggctgtcaatatccacatgttctgtgctcggaggcccggtctactgctctctgccatgagggccgtcgaaggccttggtctcgatgtccagcaagctgtaatcagttgcttcaatggctttacgttggatatttttaaggctgagcaatgcaaggacggccctgggctgttgcctgaagaaatcaaggccgttctgatgcaatccgccgggttccataccatgatctag</cdnaseq>|
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| − | AA = <aaseq>MLPRFHGAMWMQDDGGGDQEHGQAAPPGQEQHHHDQHLMALAAA AAGGAGFGAAQAPAPLLDEDWYFDAAGGGGGGAHGSMMLGLSSVHGGIGAGTSGGGHG QQFSLLNMGAAAAPFDVSGFDLGIACGGVGGGGDVVSFLGGGNASNTALLPVGNAGFL GTFGGFGTAASQMPEFGGLAGFDMFDAGAVNTGGSSSSSSAAAAAASASAHVSNTAPF SGRGKAAVLRPLDIVPPVGAQPTLFQKRALRRNAGEDDDDKKRKAAAGAGAGALSADG ADMVLDDGDDDGLSIDASGGLNYDSEDARGGEDSGAKKESNANSTVTGDGKGKKKGMP AKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQKINDLQNEL ESSPATSSLPPTPTSFHPLTPTLPTLPSRIKEEICPSALPSPTGQQPRVEVRLREGRA VNIHMFCARRPGLLLSAMRAVEGLGLDVQQAVISCFNGFTLDIFKAEQCKDGPGLLPE EIKAVLMQSAGFHTMI</aaseq>|
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| − | DNA = <dnaseqindica>58..1149#2044..2271#2507..2677#2797..2880#gcacctctgcatctctgccatctccttccccaccccaccgccattgccgccgcggcgatgctgccgcggtttcacggcgccatgtggatgcaggacgacggcggcggcgaccaagaacacgggcaggcggcgccgcctgggcaggagcagcaccaccacgaccagcatctcatggcgttggcggccgcggccgcgggcggcgccgggttcggcgcggcgcaggcgccggcgccgctgctcgatgaggactggtacttcgacgcggcgggtggtggtggtggtggcgcgcatgggtccatgatgctgggtttgtcgtccgtccatggcgggattggggcggggacgtctggtggtgggcatgggcagcagttctcgctgctcaacatgggcgccgcggccgcgccgttcgacgtctccgggttcgacctcgggatcgcctgcggcggcgttggcggcggcggcgacgtggtgtcgtttcttggcggcgggaacgcgtcgaacaccgcgctgctccccgtcgggaacgcggggttcctcggcacgttcggcgggttcggcaccgcggcgtcccaaatgccggagttcggcgggctcgccgggttcgacatgttcgacgcgggcgccgtgaacaccgggggcagctcctcctcctcgtcggcggcggcggcggcggcgtccgcctcggcgcacgtgagcaacaccgcgccgttctccgggcgcggcaaggcggcggtgctgcggccgctggatatcgtcccgcccgtgggcgcgcagccgacgctgttccagaagcgcgcgctccgccgcaacgccggcgaggacgacgacgacaagaagcgcaaggccgccgcgggcgcgggcgcgggcgcgctgtccgccgacggcgccgacatggtgctcgacgacggcgacgacgacggcctcagcatcgacgcgtcgggcggcctcaactacgactccgaggacgccaggggcggcgaggacagcggcgccaagaaggagtcgaacgccaacagcacggtcaccggcgacgggaaggggaagaagaaggggatgccggccaagaacctcatggcggagcgccgccgccggaagaagctcaacgaccgcctctacatgctccgctccgtcgtgcccaagatcagcaaggtcaggattccttctcctgctctcccaattctcatgaaatctctcaaaaagttcttaattctggcgaattttagggaatgcgtaattttggtcgaattttgtgtgttttctttgccatgaagagtggaaaggggaaaataaattctgtggttagcattgctaccaatattcttgtatgatataagttctacttatgatttgaatttctgaacttcaagtatatgagtttgatgaactatttttcatagccaacggcatgcatttcagttgcgattgttcatgtcaaattgtggatatacaccaactttggaaggattttgtttcatttacagaaattctagcttctagttctatgttctgttaggaactttgattgtctttaggaaggagtagatagaatgacttcaattgtcctagtcgttgctggttacaagaattaaatgtgacttctgttcataagatgtctgcatgggaatttttactgtccatcacactgtcactacctgtctctgctgcctcctgttcagtttccagtcaatcgagtagacttgtagacagattgcagaaaaacaataaaaagccatgccctacataactgtgttttagtttagttttagtagtcagagaatctttcagtattttgttgtataaaaaatgagttgctctattttcttttactaccttttattttgtgttgagacagtgggagagaatgagttagtatactgcactgcatcatctgttatctgttcctgaatactgacattgtttcctttttcacatttcctcttgctggtactactaatatcattcatatgaaagcaattctatagtgatgcattatacttgtgatgatttagcaataagatgattatatgtgtttgcaattggtagatggacagggcttccattctcggcgacgcgattgagtacctgaaggagctgctgcagaagatcaatgatcttcagaatgagctcgagtcgtcccccgcgacgtcgtcattgcctccaacacccacaagcttccatcccctgacaccgacgctgcccacattgccgtcccgcatcaaggaagagatctgcccaagtgcattgccaagccccactggacaacagccaagggtcagtatctcctatcttctgaatgtcaccagatgagagtatagcttgtttcagatgagataacctgcatatcagaaaaggaattgcattgtcattggtataattatgcggttgataagtagtagacagtaaaatgtgcaatgtggttgatttatgcatcagattttctaactattgccaacctgatcaagcatttgacacactttctgacctttttttctacatcttgcaaaaggttgaggttaggctgagggaaggccgggctgtcaatatccacatgttctgtgctcggaggcccggtctactgctctctgccatgagggccgtcgaaggccttggtctcgatgtccagcaagctgtaatcagttgcttcaatggctttacgttggatatttttaaggctgaggtaatgcataaaattctatgctcattttcagaactagcatttcgatatagtatcctgaaggatagtggtgatggtactgaaactcaatttgaactgacaattgctcaattttaatgcagcaatgcaaggacggccctgggctgttgcctgaagaaatcaaggccgttctgatgcaatccgccgggttccataccatgatctaggacaggagagctcaatcaaactccaaaggacagagtagctcaggaattgacaaagtaccggtgtttcctggtcatgtggcattttcgacagaaggaagttcctctttttagtagttttagacctgctcagggcttgctgaaccagtttatcttctagtatttagagtccccaaaaaaaataatgtcagtagtctcttggtgctttaacattgtgttttgaaaccttctgcctgttttttttacttcccggtacatgttttcgtcttgtgtaagtctgaagatgaattcctatcaattaacaggcaaagaaacaggatcattccaagaac</dnaseqindica>|
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| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001074519.2 RefSeq:Os11g0523700]|
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| − | }}
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| | [[Category:Genes]] | | [[Category:Genes]] |
| | [[Category:Japonica mRNA]] | | [[Category:Japonica mRNA]] |
