Difference between revisions of "Os05g0489900"
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| − | + | The rice '''''Os05g0489900''''' was reported as '''''OsCCaMK''''' in 2014 <ref name="ref1" /> by researchers from Japan. | |
==Annotated Information== | ==Annotated Information== | ||
| + | [[File:30-Os05g0489900.png|right|thumb|327px|'''Figure 2.''' ''CH 4 flux and CH 4 concentration in soil water in WT and NE1115 plants under LN and SN paddy fields.<ref name="ref1" />.'']] | ||
| + | ===Gene Symbol=== | ||
| + | *'''''Os05g0489900''''' '''<=>''' '''''OsCCaMK,CCaMK,OsCCaMK1, OsDMI3''''' | ||
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===Function=== | ===Function=== | ||
| − | + | * '''''OsCCaMK''''' is required for fungal 29 accommodation in rice roots | |
| + | * CH4 oxidation and N2 fixation were simultaneously activated in the root zone of WT rice in the LN field, and both processes are likely controlled by '''''OsCCaMK'''''. | ||
| − | === | + | ===Phenotypic analysis=== |
| − | + | * The researhcers report the effect of a Tos17-induced '''''OsCCaMK''''' mutant (NE1115) on CH 4 flux in low-nitrogen (LN) and standard-nitrogen (SN) paddy fields as compared with wild-type (WT) Nipponbare. Growth of NE1115 was significantly decreased compared with that of WT, especially in the LN field. The CH 4 flux of NE1115 in the LN field was significantly higher (156–407% in 2011 and 170–816% in 2012) than that of WT, although no difference was observed in the SN field. | |
| − | + | * The copy number of pmoA (encoding methane monooxygenase in methanotrophs) was significantly higher in the roots and rhizosphere soil of WT than those of NE1115. | |
| − | + | * However, mcrA (encoding methyl coenzyme M reductase in methanogens) copy number did not differ between WT and NE1115. | |
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You can also add sub-section(s) at will. | You can also add sub-section(s) at will. | ||
==Labs working on this gene== | ==Labs working on this gene== | ||
| − | + | * Graduate School of Life Sciences, Tohoku University, Katahira, Aoba-ku, Sendai, Miyagi 980-8577, Japan | |
| + | * National Institute for Agro-Environmental Sciences, Tsukuba 305-8604, Japan | ||
| + | * Graduate School of Agricultural Science, Nagoya University, Furocho, Chikusa, Nagoya 464-8601, Japan | ||
| + | * Memuro Research Station, National Agricultural Research Center for Hokkaido Region, Shinsei, Memuro-cho, Kasaigun, Hokkaido 082-0081, Japan | ||
| + | * Department of Plant Sciences, National Institute of Agrobiological Sciences, Tsukuba 305-8602, Japan | ||
==References== | ==References== | ||
| − | + | <references> | |
| + | * <ref name="ref1"> | ||
| + | Bao Z, Watanabe A, Sasaki K, Okubo T, Tokida T, Liu D, Ikeda S, | ||
| + | Imaizumi-Anraku H, Asakawa S, Sato T, Mitsui H, Minamisawa K. A rice gene for | ||
| + | microbial symbiosis, Oryza sativa CCaMK, reduces CH4 flux in a paddy field with | ||
| + | low nitrogen input. Appl Environ Microbiol. 2014 Mar;80(6):1995-2003. doi: | ||
| + | 10.1128/AEM.03646-13. Epub 2014 Jan 17. PubMed PMID: 24441161; | ||
| + | </ref> | ||
| + | </references> | ||
==Structured Information== | ==Structured Information== | ||
| − | + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 5]] | |
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| − | [[Category:Genes]] | ||
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| − | [[Category:Oryza Sativa Japonica Group]] | ||
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Latest revision as of 10:07, 7 May 2017
The rice Os05g0489900 was reported as OsCCaMK in 2014 [1] by researchers from Japan.
Contents
Annotated Information
Figure 2. CH 4 flux and CH 4 concentration in soil water in WT and NE1115 plants under LN and SN paddy fields.[1].
Gene Symbol
- Os05g0489900 <=> OsCCaMK,CCaMK,OsCCaMK1, OsDMI3
Function
- OsCCaMK is required for fungal 29 accommodation in rice roots
- CH4 oxidation and N2 fixation were simultaneously activated in the root zone of WT rice in the LN field, and both processes are likely controlled by OsCCaMK.
Phenotypic analysis
- The researhcers report the effect of a Tos17-induced OsCCaMK mutant (NE1115) on CH 4 flux in low-nitrogen (LN) and standard-nitrogen (SN) paddy fields as compared with wild-type (WT) Nipponbare. Growth of NE1115 was significantly decreased compared with that of WT, especially in the LN field. The CH 4 flux of NE1115 in the LN field was significantly higher (156–407% in 2011 and 170–816% in 2012) than that of WT, although no difference was observed in the SN field.
- The copy number of pmoA (encoding methane monooxygenase in methanotrophs) was significantly higher in the roots and rhizosphere soil of WT than those of NE1115.
- However, mcrA (encoding methyl coenzyme M reductase in methanogens) copy number did not differ between WT and NE1115.
You can also add sub-section(s) at will.
Labs working on this gene
- Graduate School of Life Sciences, Tohoku University, Katahira, Aoba-ku, Sendai, Miyagi 980-8577, Japan
- National Institute for Agro-Environmental Sciences, Tsukuba 305-8604, Japan
- Graduate School of Agricultural Science, Nagoya University, Furocho, Chikusa, Nagoya 464-8601, Japan
- Memuro Research Station, National Agricultural Research Center for Hokkaido Region, Shinsei, Memuro-cho, Kasaigun, Hokkaido 082-0081, Japan
- Department of Plant Sciences, National Institute of Agrobiological Sciences, Tsukuba 305-8602, Japan
References
- ↑ 1.0 1.1 Bao Z, Watanabe A, Sasaki K, Okubo T, Tokida T, Liu D, Ikeda S, Imaizumi-Anraku H, Asakawa S, Sato T, Mitsui H, Minamisawa K. A rice gene for microbial symbiosis, Oryza sativa CCaMK, reduces CH4 flux in a paddy field with low nitrogen input. Appl Environ Microbiol. 2014 Mar;80(6):1995-2003. doi: 10.1128/AEM.03646-13. Epub 2014 Jan 17. PubMed PMID: 24441161;
