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| − | Please input one-sentence summary here.
| + | The rice Os05g0411200 was reported as '''''CSV1''''' in 2016 by researchers from Japan. <ref name="ref1" /> |
| | | | |
| | ==Annotated Information== | | ==Annotated Information== |
| | + | ===Gene Symbol=== |
| | + | *'''''Os05g0411200''''' '''''<=>''''' '''''TCD5, OsTCD5, CSV1''''' |
| | + | |
| | ===Function=== | | ===Function=== |
| − | Please input function information here.
| + | * '''''CSV1''''' supports chloroplast development under cold stress conditions, in both the early growth and tillering stages in rice. |
| | + | |
| | + | ===Phenotypic analysis=== |
| | + | * The mutant exhibited chlorotic leaves during the early growth stages, and produced normal green leaves as it grew. |
| | + | * The growth of csv1 plants displayed sensitivity to low temperatures. In addition, the mutant plants that were transferred to low temperatures at the fifth leaf stage produced chlorotic leaves subsequently. |
| | | | |
| | ===Expression=== | | ===Expression=== |
| − | Please input expression information here.
| + | * '''''CSV1''''' transcripts were more abundant in immature than in mature leaves, and they did not markedly increase or decrease with temperature. |
| − | | |
| − | ===Evolution===
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| − | Please input evolution information here.
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| | | | |
| | You can also add sub-section(s) at will. | | You can also add sub-section(s) at will. |
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| | ==Labs working on this gene== | | ==Labs working on this gene== |
| − | Please input related labs here.
| + | * Nishina Center for Accelerator-Based Science, RIKEN, Wako, Japan; |
| | + | * Graduate School of Agricultural Science, Tohoku University, Sendai, Japan; |
| | + | * Faculty of Science and Technology, Sophia University, Tokyo, Japan; 4 Faculty of Science, University of the Ryukyus, Nishihara, Japan |
| | | | |
| | ==References== | | ==References== |
| − | Please input cited references here.
| + | <references> |
| | + | <ref name="ref1"> |
| | + | Morita R, Nakagawa M, Takehisa H, Hayashi Y, Ichida H, Usuda S, Ichinose K, |
| | + | Abe H, Shirakawa Y, Sato T, Fujiwara MT, Itoh RD, Abe T. Heavy-ion beam |
| | + | mutagenesis identified an essential gene for chloroplast development under cold |
| | + | stress conditions during both early growth and tillering stages in rice. Biosci |
| | + | Biotechnol Biochem. 2017 Feb;81(2):271-282. doi: 10.1080/09168451.2016.1249452. |
| | + | Epub 2016 Nov 2. PubMed PMID: 27804786. |
| | + | |
| | + | </ref> |
| | + | </references> |
| | | | |
| | ==Structured Information== | | ==Structured Information== |
| − | {{JaponicaGene|
| + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 5]] |
| − | GeneName = Os05g0411200|
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| − | Description = Adrenodoxin reductase family protein|
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| − | Version = NM_001062071.1 GI:115463872 GeneID:4338780|
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| − | Length = 9498 bp|
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| − | Definition = Oryza sativa Japonica Group Os05g0411200, complete gene.|
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| − | Source = Oryza sativa Japonica Group
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| − | | |
| − | ORGANISM Oryza sativa Japonica Group
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| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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| − | clade; Ehrhartoideae; Oryzeae; Oryza.
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| − | |
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| − | Chromosome = [[:category:Japonica Chromosome 5|Chromosome 5]]|
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| − | AP = Chromosome 5:20109525..20119022|
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| − | CDS = 20109834..20110070,20111189..20111233,20111310..20111428,20111508..20111601,20112882..20113043<br>,20113175..20113324,20113992..20114039,20114712..20114924,20115011..20115136<br>,20115658..20115729,20116580..20117011,20117921..20117974|
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| − | GCID = <gbrowseImage1>
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| − | name=NC_008398:20109525..20119022
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| − | source=RiceChromosome05
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| − | preset=GeneLocation
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| − | </gbrowseImage1>|
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| − | GSID = <gbrowseImage2>
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| − | name=NC_008398:20109525..20119022
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| − | source=RiceChromosome05
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| − | preset=GeneLocation
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| − | </gbrowseImage2>|
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| − | CDNA = <cdnaseq>atgctccctgaagaggccttcaccgttattcgcaagtcgtttgatgcacggaagattttgaaagaacctcaatttgtttataccgttgatgtggctgttaagagacttctggatttggagccgagaacgtgggattttattgctagattggaaccaaagcttggaacaatagaatacatgcctgatgagaaagtagcatctgatctggtcagtatgcttaatgtttataagcaaggttctgatggtgaactgggaatcaatgatactgtcaataatggctctatctgtagtccgcgaaagaaaccaagggtggcagttgtaggaagtgggccatcaggcttgtttgcctcccttgttctaggtgaacttggtgcagaagttaccttaatagagcgtggtcaacctgttgaacaaagggggcgtgatattggtgccttagtagttagacgaattctccattcagaaagcaacttttgctttggagagggtggtgcaggtacatggagtgatgggaaacttgtgaccaggataggaagaaacactgatggtgttcaggctgttatgaaaacatttgttcaatttggaggtcctccaaatatactagttgatgggaaacctcacttgggtacagataaacttgttcctctgctgcggaacttcaggcatcacttaaaagagttgggtgttaacataatatttaatactagagtagatgatcttgtagtggaaggtgggcaagtaaaaggagttgtcgtgtctgactcaagactgcagctaggttctcccaaccagacactatcatttgatgcagttgtattggcagttggtcactcagctcgtgacacatacagtatgcttctgaggcataatgtagatatgcacccaaagagttttgctgttggcttaagaatcgagcacccccaagaactgataaacgacattcaatactctgaattggctgctgaagtacataaagggcgtgggcggatacctgtagcagattacaagatagtgaaatcttttggtgaaggagatgcagagctaccagaacaaaatcgcagttgttactcattttgcatgtgtcctggtggacaggttgttctaactagcacaaacccatcagaattgtgcatcaatggtatgtcattctcaaggcgtgcatccaagtgggcaaactcagcttttgtggccactgtgtcatctcatgactttaggccatttgaatcccatggttctcttgcaggcgttgaattccagagagaatttgaaagaagagcagctaccatggggggagggaatttcgttgttcctgcacagtgtgtcacagattttctcagtaacagattgtcagttacaactctcccaccatcaagctataggctgggagttcggccatccaaactccatgagctattcccttcgcacataactgaagttctacaacaatcaataataatgattgaggaagagatgccaggatttgtatctagtgaggcattacttcatggtgtcgagacaagaacaagctccccattgcaaatttcacgaaataccggtacatatgagagcacatcactgcaagggctgtatcctattggggaaggtgctggctatgcagggggtatattaagtgcttctgtggatggtatgtattgtggttttgctttagccaaacagctttctctattccatggcgatatagagtcaactcttggcaaagcacaaaaccaaaaaggcttcgtaaaatattga</cdnaseq>|
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| − | AA = <aaseq>MLPEEAFTVIRKSFDARKILKEPQFVYTVDVAVKRLLDLEPRTW DFIARLEPKLGTIEYMPDEKVASDLVSMLNVYKQGSDGELGINDTVNNGSICSPRKKP RVAVVGSGPSGLFASLVLGELGAEVTLIERGQPVEQRGRDIGALVVRRILHSESNFCF GEGGAGTWSDGKLVTRIGRNTDGVQAVMKTFVQFGGPPNILVDGKPHLGTDKLVPLLR NFRHHLKELGVNIIFNTRVDDLVVEGGQVKGVVVSDSRLQLGSPNQTLSFDAVVLAVG HSARDTYSMLLRHNVDMHPKSFAVGLRIEHPQELINDIQYSELAAEVHKGRGRIPVAD YKIVKSFGEGDAELPEQNRSCYSFCMCPGGQVVLTSTNPSELCINGMSFSRRASKWAN SAFVATVSSHDFRPFESHGSLAGVEFQREFERRAATMGGGNFVVPAQCVTDFLSNRLS VTTLPPSSYRLGVRPSKLHELFPSHITEVLQQSIIMIEEEMPGFVSSEALLHGVETRT SSPLQISRNTGTYESTSLQGLYPIGEGAGYAGGILSASVDGMYCGFALAKQLSLFHGD IESTLGKAQNQKGFVKY</aaseq>|
| |
| − | DNA = <dnaseqindica>8953..9189#7790..7834#7595..7713#7422..7515#5980..6141#5699..5848#4984..5031#4099..4311#3887..4012#3294..3365#2012..2443#1049..1102#ggctaaaacccacattatcctcaggcgcaaccgcgctctccgttcttccttccaccccaactcgccatggcgctcgccgccgcctccgtctcagttctccatctcccggccatctccctcccgctcccttgccttcagggctcaaaccctagccgtcccagcctcggcttgaccaatgccctcccgtggcgccgacgcggtgggcgcggggcgggggcggtggcgggggcggtgcgctgcgcgaagcgcacgggcaagcggcggtacccgtcggagaagaagcggctggataggcgacacaaggagctgctccggaaggccgcgccagaggagggctcggcggggcgggaggcgggttactggcggctctccaagctcgccgtccctgcccgcgacgaccccggcaaggacttcgctggtgtctccccgccgctcctccaagccatcgccaaagcactgaaattcccggtacgataatgcattgcatttttgtagtagctggtgaaatgcagtaaaaaattgcgaggttttagaatagctacaccgttgatgatacagaggattttgggggcgtggattcccatgagtcgctgctctggatgtgtggaactgtaggaaatattgccctagttccttgtgcggatagctcaattcttgatttgagcagcaggttgctaatttcctctttcaagttatgaaattaagccgcggtttgcaacttactaaacatgcgtacggctctgtctctcgagcatgtttgaacgttgttcgtaaccgtctatcgaattatgcatatggttcgtgcattatctggcagggctgagtgttagctgcttgcaacctgttatacaagtttccgattgcgtcctgctggagtaatctcaatatttaaactacaacgtttagtgatacgcctttcccttgaacattgtgactatggctgcttttgcatcttttgtccatattgctgagctcatattttatgcttagacttattctaaagttatgggcttctaaaatctattctgttctactgtaggtttcttctatgctccctgaagaggccttcaccgttattcgcaagtcgtttgatgcacggaaggttctttatggaatgattccatctatatcttatttagtatttgttatcctgcaaagagacgagattgcggcttggttgttaactgtaacacagatgcttgatgttgaagctgctaaatagtgcacccaaatcggattaacattaacacaaccgggaagaaacccaatgtagtaaccttcatttcagatctccattaacatgtcatccttctgttgatgtgtccgtcctaacacacagggtaacctttatttgcatcccaagtttgcaatagttccagatggccctgtaatggctcatctgagggtttaaggaagaaaacatgaagtagtgaagaatttgactatttttgtgctacctggtattttgcttagaatactggtcttctttactagatccttttgtcttgatgtcttgcagcaaagtatattattgttttgtttcctttgcttggttgttcttcattccgagagtgttatttcaggttttgcagactaggatgaagtcatgatgctctgcatctacttgtggatttgtagtcaacactaatttatgcattttggtttacatctttcatctctgtttctgactttgcactatttttttttttgttctgtaggcatttttctgaattaaacacatctttgtttatgtggactttaccttatttcagtgactggttttttagcgtgattatacaattgtagttatgccatataaaagttaattgtaatacttttcctttctacaaggctctgtgttataccgattgcaatttgcttcacctgtgttgcattcatgtgtcagtgttggttctactgcgttgataattgtttatatcatttatatgctgattagtttatcacttgcacaatttctttgtgactaaagaaatcatgtttaacatggcagattttgaaagaacctcaatttgtttataccgttgatgtggctgttaagagacttctggatttggagccgagaacgtgggattttattgctagattggaaccaaagcttggaacaatagaatacatgcctgatgagaaagtagcatctgatctggtcagtatgcttaatgtttataagcaaggttctgatggtgaactgggaatcaatgatactgtcaataatggctctatctgtagtccgcgaaagaaaccaagggtggcagttgtaggaagtgggccatcaggcttgtttgcctcccttgttctaggtgaacttggtgcagaagttaccttaatagagcgtggtcaacctgttgaacaaagggggcgtgatattggtgccttagtagttagacgaattctccattcagaaagcaacttttgctttggagaggtatactactcgttcctattttgcttacaggacttcaccaaatacatgtcagaattgtcttgagatatgttcgaataggtattttgttgacaatggattgaggcatttaacagctcgacatatatcttttgataaacatataaagtagctatatgtccatttggctactattatggccaggtggccacatgaagtgatttcatactatggcagttggtgcatttataccaattacttgacctgaaagaagcatacatgtctagacgttatatgcatctgaaataatgtaaggatgctttaaatctattgaatgatcatgctattttgaaaactgttgtgccataatcttcatatattatcaccattttgtccatctgttttcatatcatttaccatgtataaattaacaatttaaaattgaacttatacactgtacagtatgctcaagtcgtgaactccctactcgattactcccaccagtcacaaatatctggcgtttaggataagatttggtcaaacttttgaaactccgaccatcaataatttctcgaatacttagtttttaagaaacgattgcatatatttgccctgaaaagtactatcataatatcataaacttattagattttataaacttattctaatataaaattgatggttagagttctaaaaatttaaccgaatctcgttctaaatgtcaaatatttatgacaggggagagtatttggttctgtcttgctagttcaactacccattagcgaagaattgctcaaactacttgccccttgttcaatattcatccaaagattgagcccatcaattcttgatcttctgttcttaatcatagcagggtggtgcaggtacatggagtgatgggaaacttgtgaccaggataggaagaaacactgatggtgttcaggctgtgagaatcttccttctctaccttattcaccgtttattgtataagtccagttagatattccatttgcttatcgatgcattactttccattgatgtttttggactgttaaaattttcctgctccatgtcaacaaatatttagcatataagtatgctgtgagccatactccctctatcccaaaaaatgtccaatcctagagatgtatctggacatacgtgttgtccaaatacatctctagaattgggttttttgtttttggggcagaggagtaggtattacttttttttttctgaatgaagcaatttaaaataaaatttgcaaactcccatagaattattttaatgaaacaattaaaaataaaaatcaggaacctcttagaaattgttttggttacttattgattcaagcattagcatctagtgctatctgggatcaagatcctaaggtcagcaagttactgttgattacttgagtttgtgcttgtgtattttaagttatcggtctgtggttttggatttcaggttatgaaaacatttgttcaatttggaggtcctccaaatatactagttgatgggaaacctcacttgggtacagataaacttgttcctctgctgcggaacttcaggcatcacttaaaagagttgggtgtgagtgcaacatatgtttctaagcgtcgttgttcttttgttctggaagcgccccatggattgatgtgtttattttccgtttacaggttaacataatatttaatactagagtagatgatcttgtagtggaaggtgggcaagtaaaaggagttgtcgtgtctgactcaagactgcagctaggttctcccaaccagacactatcatttgatgcagttgtattggcagttggtcactcagctcgtgacacatacagtatgcttctgaggcataatgtagatatgcacccaaagagttttgctgtaagtcttcttatgctaggtggttcctatttcctactttggttatgcttaagctgattgttacatgaaaactagccatacggaggaatttaaggccatgtttgtgttgggtattggaggtaaaatattcattaggctctgaaccaaatagaaacataggcaccgagcagagtttgttcacttagtttatcaaatccataaaccctatgagtcagagaaaaccagtacatgtcatgtagtaaaaacttataaattgttttaagattttgaaatgacattgcaatacttcctatttttctacgtcaataatatattggtgagttggtaacattcttaaaaacattgatatcctatttcacagtgcaaacataactttgacaagatgcatggacgattaaataatatggtcaacataaactagctgagttaggatgatgttttgaactggttaatgtacattcattatcaaactggggcctaaaataggacttgtattgtatggacactgaaatgcagagtggttacgctttgaatttctatgctttatgctttcatatgttgctcactttatcttttcaaccactagttcttattccatgaaaaaacaatagtaaaatactttcttcttcagtccatgtggcttaaacaattaaacataggttgttcttacaggttggcttaagaatcgagcacccccaagaactgataaacgacattcaagtaagacatatttcctttttgttgacacaaatgttattctgaacgatactcaatgtgattaactttattccttacattgtttttcattaatttacttttcctacaatcataaaattgaacttaagtttaggatgttcctctcttagtcttactgagacagtattggcgcaatcctgttctgaactgtgaaaaacaaagtgaaactgcctgttatttccttttgagttttacactgaaattggcagctcaagcagaagctaagaaatgacctattttggtgttcgaatatttattcatttgtttctcaaattggatactgaagcagctagtgaagtactgaagtatatagcctcataattcagttataaaatgcatggcactgagctttgcttgcagggccagggcttgtatccaaaagtgatctatgacatagacaccataaaaattaccatttactgtgtggtaacaacgatatgttgtagtatgtgtaaaaacttatgtagagacctgtgcagctactgataccaggctcctttgatatatgtatctatcgatagtttaaccaaccatgtaagcacttgaatagttgccagtttggtacagctacaacatactgtattttcattttgtatattatatggtatgtgttatttgcattcaactgcagtactctgaattggctgctgaagtacataaagggcgtgggcggatacctgtagcagattacaagatagtgaaatcttttggtgaaggagatgcagagctaccagaacaaaatcgcagttgttactcattttgcatgtgtcctggtggacaggtcagttgctcttttgttgtttcactcactccctcttctaatataggagtactactagttactgcaatcctatttctactgaattctaataataacgtgtgttctggttttttaaaaaaaaactcttgcaggttgttctaactagcacaaacccatcagaattgtgcatcaatggtatgtcattctcaaggcgtgcatccaagtgggcaaactcagcttttgtggccactgtgtcatctcatgactttaggccatttgaatcccatggttctcttgcaggcgttgaattccaggtaattgttccaatccacgtataacaacaggaattcttcaacaattgactgcactgactctctgcacaatgtaccttaaaattggaaggtattcaattaggagtggttcatagatttacagaaggtatgcaggatgctgtagataatgtgtaaaagataaccatttgggcataattttggttcactaatggtttgcttcctttaccctacattttggaatgtgcagtgctgcactcttttagtgctagatacaaaatgttttctttatgtcaagcaaccaaagtgccacaggttgctgtttgactttagggcaaataagctaattgttcctccttggactcattgtattgcccattttagacccttgacgggactggcctaagcaatttgaggaggaagttgtgagctgcgataactgcatattctgttaggcacagcctggaggtggaggtaggcacagctagataaacgtgtaggactgggatttgagatggtcgttctaaccatgctaacagtgtaggggaagtcccagtagttgtagcaataaggtggtatggaagaggataatatgaatatgaactatcattgtggatagtgtgtgaaattttgtttgagctttaatctaatagatgaatatttgaatggacagtcacatcaattaaataataaatttcttcatggcgagatgattatcttttgttatcgaactcaaaaaaacaaaaaatatccaggtggactgacaaatgcataatttatctaaatactccttccgtcccaaaatgtatgacgtcattgacttttcgcataacgtttaaccgttcatcttattcacaaatttagtataaatgtgaaaaagtataagttaagattatagtttctttgatgataaaacaagtcacaacaaaataaatgatatttatataattttttgaataagacaaatggtcaaactttatgcgaaaagtcaacgatatcatacattttgggacggagggagtatgacaaatagattggatacgcagcatggtagagattgtcgcttgcgtcagtcatcactatgctgtgtgcacatgtgcctgcaatccatttgctcatgaatgtgggatgccatgtgctgccttttgcctaaacctcttttgttaatgggcaaagacaatactcctcttgtatgtaagataaaattccattttaagtagtatttccctcatgttcttccttccttgctttagtgttcaattcccaaaaatgcaaatttaacaagtatatgttcatggaaacagagagaatttgaaagaagagcagctaccatggggggagggaatttcgttgttcctgcacagtgtgtcacagattttctcagtaacagattgtcaggtactaagattttattaggtggtaaagatacggagtatatacttttcttcttattaattaactttattatctgttccagttacaactctcccaccatcaagctataggctgggagttcggccatccaaactccatgagctattcccttcgcacataactgaagttctacaacaatcaataataatgattgaggaagaggtttgacacacactattttttcttcttctgtggttttaaataccatctctctgacattgcaacccaatattttcagatgccaggatttgtatctagtgaggcattacttcatggtgtcgaggtatgcaaattcatatgcaagctcgaaatttttcatcagtctatttccatagaatttattgtggttcattcattaaatcctgaaaccaattgtttaacatcaaagagtctagtgttagtccaatgactccaatcccaccaatgcctgagcattggacggtagcattacttaatctcagagcaacgtgcccatatgtttacaaatttgtcgcttatgatttacagccaatctctttggatctagcctacacactgaatccttcttcttagttaattttatttgggcaaagcttaaggcggtaaagccattatatcatagtttatgaaatggaaaaaagcctggcaaggcaaggcaataaaatccacactttatgagattgggaacattgatttttttagcttccaactttccctaaagaggtccaatgctggttcgtgggtctccctggatgctctgatttctctactttgaaataatcaccaatattttttgacatagcaactataccagggttctaggcttttagctactggattcacccctagattccctgacctatacttattgccattgtaaagatacctcttattgagctgcatccaccttccactgaaccttctcttgtgacttcagttatcgcatttatctctatccctgagctatatttaacattgatgtccttatcagttatcatttcttctccatattcgctatgactgtacctacgtttttcttttcctgttgctacattgctcttagaattaataaccccttaaacggaaaacatttcctgtatggagtacattcagtttctttccatgttcactgttttgtgtaaaccatagtcatgtagggttccccttttctttcctaagttgtgcagtatctgctgcatgagaaattaattataccgagtctcttctactgtgttgtcgcccttcacaccctgatgacctgttgaactgttcaatgcacaagataatttcttagaaagcactccaatccttcaccgtttctttggacttctattcatgtcacctaccttttaactataattctatcttttcaactacgatttacttttattttatttattgcaattttctacctgtttccagacaagaacaagctccccattgcaaatttcacgaaataccggtacatatgagagcacatcactgcaagggctgtatcctattggggaaggtgctggctatgcagggggtatattaagtgcttctgtggatggtatgtattgtggttttgctttagccaaacagctttctctattccatggcgatatagagtcaactcttggcaaagcacaaaaccaaaaaggcttcgtaaaatattgagtatggatgcgtaattagttgattgtaggtatcagatattgaaagataaattcaccgtggtagcaaattgcctaggaaaactccttatgtagagaagttgtaatgagtgcagtcatagaaaatattgagcgagtatgtactatgtaaatgacatcaaaggtgctataggataataggagtctataccatgtcgctatgtaataaactagtgaaatttctaggctaggaataacaatataataattaacttagaggacggcattttaatcttgtagattattcaataatgctgcccacaaattttatgtg</dnaseqindica>|
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| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001062071.1 RefSeq:Os05g0411200]|
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| − | }}
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| − | [[Category:Genes]] | |
| − | [[Category:Japonica mRNA]]
| |
| − | [[Category:Oryza Sativa Japonica Group]] | |
| − | [[Category:Japonica Genes]] | |
| − | [[Category:Japonica Chromosome 5]]
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| − | [[Category:Chromosome 5]]
| |
