Difference between revisions of "Os03g0711100"

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(Created page with "{{JaponicaGene| GeneName = Os03g0711100| Description = Similar to CONSTANS-like protein| Version = NM_001057588.1 GI:115454904 GeneID:4333882| Length = 2544 bp| Definitio...")
 
(Annotated Information)
 
(7 intermediate revisions by 3 users not shown)
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{{JaponicaGene|
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The rice '''''Os03g0711100''''' was reported as '''''OsCOL10''''' in 2016 by researchers from Japan and  Germany. <ref name="ref1" />
GeneName = Os03g0711100|
 
Description = Similar to CONSTANS-like protein|
 
Version = NM_001057588.1 GI:115454904 GeneID:4333882|
 
Length = 2544 bp|
 
Definition = Oryza sativa Japonica Group Os03g0711100, complete gene.|
 
Source = Oryza sativa Japonica Group
 
  
  ORGANISM  Oryza sativa Japonica Group
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==Annotated Information==
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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*'''''Os05g0411200''''' '''''<=>''''' '''''OsCOL10,COL10'''''
            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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===Function===
            clade; Ehrhartoideae; Oryzeae; Oryza.
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*OsCOL10 functions as a flowering time repressor that links Ghd7 and Ehd1 in rice.
|
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Chromosome = [[:category:Japonica Chromosome 3|Chromosome 3]]|
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===Expression===
AP = Chromosome 3:29447388..29449931|
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*a constitutive flowering repressor OsCOL10 encodes a member of the CONSTANS-like (COL) family
CDS = 29447463..29448419,29449124..29449432|
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*Transcripts of OsCOL10 are more abundant in plants carrying a functional Ghd7 allele or overexpressing Ghd7 than in Ghd7-deficient plants, thus placing OsCOL10 downstream of Ghd7
GCID = <gbrowseImage1>
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name=NC_008396:29447388..29449931
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You can also add sub-section(s) at will.
source=RiceChromosome03
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preset=GeneLocation
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==Labs working on this gene==
</gbrowseImage1>|
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GSID = <gbrowseImage2>
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*National Key Facility for Crop Gene Resources and Genetic Improvement, Institute of Crop Science, Chinese Academy of Agricultural Sciences, Beijing 100081, PR China
name=NC_008396:29447388..29449931
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*State Key Laboratory of Chemo/Biosensing and Chemometrics, College of Biology, Hunan University, Changsha 410082, China
source=RiceChromosome03
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*National Key Laboratory for Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University, Nanjing 210095, PR China
preset=GeneLocation
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*Present address: Max Planck Institute for Molecular Plant Physiology, D-14476 Potsdam-Golm, Germany
</gbrowseImage2>|
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CDNA = <cdnaseq>atggcgagcgccgccgcggcgacgggcgcggcgctgggggcgcgcacggcgcgggcgtgcgacgggtgcatgcggcggcgggcgcggtggcactgccccgcggacgacgcgttcctgtgccaggcgtgcgacgcgtccgtgcactcggcgaacccgctggcgcggcggcaccaccgcgtgcgcctcccgtcggcgtcctcctcgccggcatcctcccctcgctcggcggccgctccacgtgccggatcagacgaccccgacgcgccggcgtggctgcatgggctcaagcggcggccgcgcacgccccggaccaagcccgggggaggcggcaagcacgacgcctccgccgcgacggtggccgcggcggcggcgtcggcggtcccggacctcgaggcggaggagtccgggatcgtgggcgacaccgaccacgacgtcggggaagaggacgacgaggacctgctgtaccgcgtccccgtgttcgaccccatgctcgccgagctctacaaccccgtggcggccgacgacgaggagcagcagatcgagcagaagcctgctgcacgcgtcgtgccgttctcggagccgtcgccggagttcgcctccggctcggtggaggcggacggcctctccggcttcgacgtgccggacatggagctcgccagcttcgcggcggacatggagagcctcctcatgggagtcgacgaggggttcgacgatctgggcttcttggacgacgagaagcctcacgtgaaactggacctggacatggacatggacttcgcctccatctcgccggcgccggcgccggagcgggaggagaggaagaggaagcggccggagatgatactcaagctcgactacgagggcgtcatcgactcgtgggcccgcgacggagcctcgccgtggttccacggcgagcgccctcgcttcgatcccagcgagtcatggccggacttcccggcgggaagccggggagggctcggcgcggcggtgacggcggtgaccggcggcgagagggaggcgcgggtgtcgcggtacagggagaagcggcggacgcggctgttcgccaagaagatccggtacgaggtgcgcaagctcaacgccgagaagcggccgcggatgaagggccggttcgtcaagcgcgccgccgcgctgccgccgctcccgctgcccaggcaccagcatccgccgccgccgccgccgcgcgctctgccgccggtgccgatgatgctcgcgccgcgcggcgcgcacgggcgctaccgtttttga</cdnaseq>|
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==References==
AA = <aaseq>MASAAAATGAALGARTARACDGCMRRRARWHCPADDAFLCQACD                    ASVHSANPLARRHHRVRLPSASSSPASSPRSAAAPRAGSDDPDAPAWLHGLKRRPRTP                    RTKPGGGGKHDASAATVAAAAASAVPDLEAEESGIVGDTDHDVGEEDDEDLLYRVPVF                    DPMLAELYNPVAADDEEQQIEQKPAARVVPFSEPSPEFASGSVEADGLSGFDVPDMEL                    ASFAADMESLLMGVDEGFDDLGFLDDEKPHVKLDLDMDMDFASISPAPAPEREERKRK                    RPEMILKLDYEGVIDSWARDGASPWFHGERPRFDPSESWPDFPAGSRGGLGAAVTAVT                    GGEREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRAAALPPLPLPRH                    QHPPPPPPRALPPVPMMLAPRGAHGRYRF</aaseq>|
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<references>
DNA = <dnaseqindica>76..1032#1737..2045#acactactgttcccatttttttttgttaaccgcgaaaagtgttgtgttgtttgggtaggcagggtgttcgacggaatggcgagcgccgccgcggcgacgggcgcggcgctgggggcgcgcacggcgcgggcgtgcgacgggtgcatgcggcggcgggcgcggtggcactgccccgcggacgacgcgttcctgtgccaggcgtgcgacgcgtccgtgcactcggcgaacccgctggcgcggcggcaccaccgcgtgcgcctcccgtcggcgtcctcctcgccggcatcctcccctcgctcggcggccgctccacgtgccggatcagacgaccccgacgcgccggcgtggctgcatgggctcaagcggcggccgcgcacgccccggaccaagcccgggggaggcggcaagcacgacgcctccgccgcgacggtggccgcggcggcggcgtcggcggtcccggacctcgaggcggaggagtccgggatcgtgggcgacaccgaccacgacgtcggggaagaggacgacgaggacctgctgtaccgcgtccccgtgttcgaccccatgctcgccgagctctacaaccccgtggcggccgacgacgaggagcagcagatcgagcagaagcctgctgcacgcgtcgtgccgttctcggagccgtcgccggagttcgcctccggctcggtggaggcggacggcctctccggcttcgacgtgccggacatggagctcgccagcttcgcggcggacatggagagcctcctcatgggagtcgacgaggggttcgacgatctgggcttcttggacgacgagaagcctcacgtgaaactggacctggacatggacatggacttcgcctccatctcgccggcgccggcgccggagcgggaggagaggaagaggaagcggccggagatgatactcaagctcgactacgagggcgtcatcgactcgtgggcccgcgacggagcctcgccgtggttccacggcgagcgccctcgcttcgatcccagcgagtcatggccggacttcccggtaagctctcacgcagagatctgtagctttctgccggaattggattttcatctctcgatggacatctccatcttagctcctttattccgtattacctactccctccggctaaaaaatataagcatttttaaaatagtgttaagtcaacatttttaaaatttaactatttatagtaaaaaaataataataaaaaaagattaatcctgtaaatttgatgttactggatgtattattgaacaaactgtcataatatgtaactctttttatttataatatcttagctttgtagatattgttggtcgaagtagtatctcgacgaccgtgtcgaagtataaaaatacttatattttaaaatggatggagtaaatagttattatttttttaagaaaaatgataacatagattaatatgaaatgtatcacctccgcaagcatacaaggcttaacttttacaattgcaacgaaaggaaccaatcaaactgaaaatagttcgtacatctgcaattatattttttcatgtttgttaaaatttatagaagctgaatttaaaactgtatgtttataaagtgaaatatttaaattaatctattttatttatattttttataactatttattagatgatgaaagcactttcctctttctgccattttcttcacgacctagcttgtgtactgttctgagctatcctatgcgtgcgtgcaggcgggaagccggggagggctcggcgcggcggtgacggcggtgaccggcggcgagagggaggcgcgggtgtcgcggtacagggagaagcggcggacgcggctgttcgccaagaagatccggtacgaggtgcgcaagctcaacgccgagaagcggccgcggatgaagggccggttcgtcaagcgcgccgccgcgctgccgccgctcccgctgcccaggcaccagcatccgccgccgccgccgccgcgcgctctgccgccggtgccgatgatgctcgcgccgcgcggcgcgcacgggcgctaccgtttttgagagctaccgctctcgatcggcttccgatgcgcatgcgcgcgtcgtctagctacatgcatgcatgcatgctagcgatagccgtttgcgtgatccaacaataagtacaaaaatactactatatatatatacaaacatacaaactcgtcgaatcatcgatcgtagcatgttggtttcaggtttaattgtttgggggtagtgttagttttgagcagaattaatctttgtgaattagggcgccctaccactctactatacgtaccaaatgtaccatgcatgtgtgcactgaagcagccggcaggttgtgtacttgtgcacaatttcatgtgcaaattaagtaggtaagttatgtgtgtggtagctaggctaggatgtgtactttcttggttttctgtaagaaagatcctgctaattataaaggttgttgtagattttgatcccggatcaatgtatgtaaaggcctatatgtatatactggtatatatatacagtgtttaagatc</dnaseqindica>|
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<ref name="ref1">
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001057588.1 RefSeq:Os03g0711100]|
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Tan J, Jin M, Wang J, Wu F, Sheng P, Cheng Z, Wang J, Zheng X, Chen L, Wang M, Zhu S, Guo X, Zhang X, Liu X, Wang C, Wang H, Wu C, Wan J. OsCOL10, a CONSTANS-Like Gene, Functions as a Flowering Time Repressor Downstream of Ghd7 in Rice. Plant Cell Physiol. 2016 Apr;57(4):798-812. doi: 10.1093/pcp/pcw025. Epub 2016 Feb 12. PubMed PMID: 26872834.
}}
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</ref>
[[Category:Genes]]
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</references>
[[Category:Japonica mRNA]]
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[[Category:Oryza Sativa Japonica Group]]
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==Structured Information==
[[Category:Japonica Genes]]
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    [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 3]]
[[Category:Japonica Chromosome 3]]
 
[[Category:Chromosome 3]]
 

Latest revision as of 03:34, 20 May 2017

The rice Os03g0711100 was reported as OsCOL10 in 2016 by researchers from Japan and Germany. [1]

Annotated Information

  • Os05g0411200 <=> OsCOL10,COL10

Function

  • OsCOL10 functions as a flowering time repressor that links Ghd7 and Ehd1 in rice.

Expression

  • a constitutive flowering repressor OsCOL10 encodes a member of the CONSTANS-like (COL) family
  • Transcripts of OsCOL10 are more abundant in plants carrying a functional Ghd7 allele or overexpressing Ghd7 than in Ghd7-deficient plants, thus placing OsCOL10 downstream of Ghd7

You can also add sub-section(s) at will.

Labs working on this gene

  • National Key Facility for Crop Gene Resources and Genetic Improvement, Institute of Crop Science, Chinese Academy of Agricultural Sciences, Beijing 100081, PR China
  • State Key Laboratory of Chemo/Biosensing and Chemometrics, College of Biology, Hunan University, Changsha 410082, China
  • National Key Laboratory for Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University, Nanjing 210095, PR China
  • Present address: Max Planck Institute for Molecular Plant Physiology, D-14476 Potsdam-Golm, Germany

References

  1. Tan J, Jin M, Wang J, Wu F, Sheng P, Cheng Z, Wang J, Zheng X, Chen L, Wang M, Zhu S, Guo X, Zhang X, Liu X, Wang C, Wang H, Wu C, Wan J. OsCOL10, a CONSTANS-Like Gene, Functions as a Flowering Time Repressor Downstream of Ghd7 in Rice. Plant Cell Physiol. 2016 Apr;57(4):798-812. doi: 10.1093/pcp/pcw025. Epub 2016 Feb 12. PubMed PMID: 26872834.

Structured Information