Difference between revisions of "Os02g0731700"

From RiceWiki
Jump to: navigation, search
(Created page with "{{JaponicaGene| GeneName = Os02g0731700| Description = Similar to CONSTANS-like 1 protein| Version = NM_001054557.1 GI:115448484 GeneID:4330626| Length = 1948 bp| Definit...")
 
 
(2 intermediate revisions by 2 users not shown)
Line 1: Line 1:
−
{{JaponicaGene|
+
The rice Os02g0731700 was reported as '''''Ghd2''''' in 2016 by researchers from china. <ref name="ref1" />
−
GeneName = Os02g0731700|
 
−
Description = Similar to CONSTANS-like 1 protein|
 
−
Version = NM_001054557.1 GI:115448484 GeneID:4330626|
 
−
Length = 1948 bp|
 
−
Definition = Oryza sativa Japonica Group Os02g0731700, complete gene.|
 
−
Source = Oryza sativa Japonica Group
 
  
−
  ORGANISM  Oryza sativa Japonica Group
+
 
−
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
+
==Annotated Information==
−
            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
+
*'''''Os02g0731700''''' '''''<=>''''' '''''Ghd2, OsBBX8, OsCCT09, OsK, OsK/Ghd2'''''
−
            clade; Ehrhartoideae; Oryzeae; Oryza.
+
===Function===
−
|
+
*Ghd2 functions as a regulator by integrating environmental signals with the senescence process into a developmental programme through interaction with different proteins
−
Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|
+
 
−
AP = Chromosome 2:31360714..31362661|
+
===Expression===
−
CDS = 31361110..31361355,31361450..31362175|
+
*Ghd2 is expressed mainly in the rice (Oryza sativa) leaf with the highest level detected at the grain-filling stage, and it is down-regulated by drought stress conditions.
−
GCID = <gbrowseImage1>
+
 
−
name=NC_008395:31360714..31362661
+
===Phenotypic analysis===
−
source=RiceChromosome02
+
*Overexpression of Ghd2 resulted in significantly reduced drought resistance, while its knockout mutant showed the opposite phenotype.  
−
preset=GeneLocation
+
*The earlier senescence symptoms and the transcript up-regulation of many senescence-associated genes (SAGs) in Ghd2-overexpressing transgenicrice plants under drought stress conditions indicate that Ghd2 plays essential roles in accelerating drought-induced leaf senescence in rice.  
−
</gbrowseImage1>|
+
*developmental and dark-induced leaf senescence was accelerated in the Ghd2-overexpressing rice and delayed in the ghd2 mutant.
−
GSID = <gbrowseImage2>
+
 
−
name=NC_008395:31360714..31362661
+
==Labs working on this gene==
−
source=RiceChromosome02
+
*National Key Laboratory of Crop Genetic Improvement and National Center of Plant Gene Research (Wuhan), Huazhong Agricultural
−
preset=GeneLocation
+
University, Wuhan 430070, China
−
</gbrowseImage2>|
+
 
−
CDNA = <cdnaseq>atggcggtggagtcgtcggacgaacggaaggccgacgaagacggagctcacgaggagctcgaggggcagttgctgtaccgcgttccggtctttgacccctccctcgccgagttctgctcgccgcccccgatcgatgacgcggcggccgcatcctcatcgtgcttcaaggaggacgccgccgacggcgccgtggaagacgcaaagtatccggcagctgcggcgtcgtcgcccgtgcagcagctcccggatagctttgtcaacttcgaaccgacggacgccgagctgagggagttcgccgccgacatggaagccctactcggacaaggcctggacgacagcaacgagctgcaggactcgttctacatggagaccctagggctaataacgccgccggtagaagaatccggccgggtgaagatggagctcgacggcggtgttgcctccaacagcagggtatctctcccatcatgccgcgctcatccgaagccggaggacgtcgaatccgccgacgtgctggacatcgatttcaactgcacctcgccggacgaacagaagtcgtcggcgagcaacggcgccgcagccgattcgcagttcttccacaggagcctggatctcaggctcaactacgaggcgatcatcgagagctggggcaactcgccgtggaccgacggccggccgccgcacggccagctcgacgacttctggcccaacgaccaccattactcggggttgtgggctgcgggagggggcgggcatggcgcggaggtggggatgatgacggtgaggccgcggatggacggcccggggcgggaggcgcgggtgacgaggtacagggagaagcggcgtacgcggctgttctccaagaagatacggtacgaggtgcggaagctgaacgccgagaaacggccgcggatgaagggccggttcgtcaagcgcccctccgccgccgccgccccgtgcgccgtcacctag</cdnaseq>|
+
==References==
−
AA = <aaseq>MAVESSDERKADEDGAHEELEGQLLYRVPVFDPSLAEFCSPPPI                    DDAAAASSSCFKEDAADGAVEDAKYPAAAASSPVQQLPDSFVNFEPTDAELREFAADM                    EALLGQGLDDSNELQDSFYMETLGLITPPVEESGRVKMELDGGVASNSRVSLPSCRAH                    PKPEDVESADVLDIDFNCTSPDEQKSSASNGAAADSQFFHRSLDLRLNYEAIIESWGN                    SPWTDGRPPHGQLDDFWPNDHHYSGLWAAGGGGHGAEVGMMTVRPRMDGPGREARVTR                    YREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRPSAAAAPCAVT</aaseq>|
+
<references>
−
DNA = <dnaseqindica>1307..1552#487..1212#gagtgcaagtgagctgcatagatttttagaggttttttgtggaatcatcttttgtgctgggagatttcttctgtttgttcttttgtttcgtcgtgacgcatgagctgcagctcggagaaggcggccggggccgtgggcggcaaggcggcgcgcgcgtgcgacagctgcctgcggcggcgggcgcggtggtactgcgcggcggatgacgccttcctgtgccaggggtgcgacacgtcggtgcactcggccaacccgctcgccaggcggcacgagcgcctgcgcctgcgcgtctcgtcgcccccgccgctgacggcgcgggcgtcggtggaggaggaggcggcggcggcggtggggacgacgacgacgacgacgtcgaagagagagggcggcgtcacgccggcatggtcgaagcgcaaggcgcgcacccggcgcccgcaggtcaagagcgtcgggcagctgctctcgaggcggctcgtcgtgccggagatggcggtggagtcgtcggacgaacggaaggccgacgaagacggagctcacgaggagctcgaggggcagttgctgtaccgcgttccggtctttgacccctccctcgccgagttctgctcgccgcccccgatcgatgacgcggcggccgcatcctcatcgtgcttcaaggaggacgccgccgacggcgccgtggaagacgcaaagtatccggcagctgcggcgtcgtcgcccgtgcagcagctcccggatagctttgtcaacttcgaaccgacggacgccgagctgagggagttcgccgccgacatggaagccctactcggacaaggcctggacgacagcaacgagctgcaggactcgttctacatggagaccctagggctaataacgccgccggtagaagaatccggccgggtgaagatggagctcgacggcggtgttgcctccaacagcagggtatctctcccatcatgccgcgctcatccgaagccggaggacgtcgaatccgccgacgtgctggacatcgatttcaactgcacctcgccggacgaacagaagtcgtcggcgagcaacggcgccgcagccgattcgcagttcttccacaggagcctggatctcaggctcaactacgaggcgatcatcgagagctggggcaactcgccgtggaccgacggccggccgccgcacggccagctcgacgacttctggcccaacgaccaccattactcggtacgtgatttttgcaatttcaataccgtgtcgtccatactctcatgctagcgcatgcgacatgcatactgaatcgaaaactgtgttggtgcaggggttgtgggctgcgggagggggcgggcatggcgcggaggtggggatgatgacggtgaggccgcggatggacggcccggggcgggaggcgcgggtgacgaggtacagggagaagcggcgtacgcggctgttctccaagaagatacggtacgaggtgcggaagctgaacgccgagaaacggccgcggatgaagggccggttcgtcaagcgcccctccgccgccgccgccccgtgcgccgtcacctagacgtacgatcgcgcacggcccggcgcgcggcaccatgcgtacgtgtccggtgtcgagacttgcctgcgttcgatcgtatgcctcatggactcgattggcacaaaagttcacgcaaaatttgtcgaagctgcacgattcaagtagtataacgttgttcaattcaaaagtttttctcttccttttttttttcggttttgttggtgtttggctcggtgcttttggatctcttttatctctgttccatcgaccggagagaaagtaggcgattgtacttgtgtaaacattggtgttcatggttttgtagaaacactccataaaggaaacaaaatgacttgtatatgtaaactgggttgtgcctgcgccacacccatgtacattgagtaatcagtacatact</dnaseqindica>|
+
<ref name="ref1">
−
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001054557.1 RefSeq:Os02g0731700]|
+
Liu J, Shen J, Xu Y, Li X, Xiao J, Xiong L. Ghd2, a CONSTANS-like gene,
−
}}
+
confers drought sensitivity through regulation of senescence in rice. J Exp Bot.  
−
[[Category:Genes]]
+
2016 Oct;67(19):5785-5798. Epub 2016 Sep 16. PubMed PMID: 27638689; PubMed
−
[[Category:Japonica mRNA]]
+
Central PMCID: PMC5066496.
−
[[Category:Oryza Sativa Japonica Group]]
+
</ref>
−
[[Category:Japonica Genes]]
+
</references>
−
[[Category:Japonica Chromosome 2]]
+
 
−
[[Category:Chromosome 2]]
+
==Structured Information==
 +
    [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 2]]

Latest revision as of 03:49, 20 May 2017

The rice Os02g0731700 was reported as Ghd2 in 2016 by researchers from china. [1]


Annotated Information

  • Os02g0731700 <=> Ghd2, OsBBX8, OsCCT09, OsK, OsK/Ghd2

Function

  • Ghd2 functions as a regulator by integrating environmental signals with the senescence process into a developmental programme through interaction with different proteins

Expression

  • Ghd2 is expressed mainly in the rice (Oryza sativa) leaf with the highest level detected at the grain-filling stage, and it is down-regulated by drought stress conditions.

Phenotypic analysis

  • Overexpression of Ghd2 resulted in significantly reduced drought resistance, while its knockout mutant showed the opposite phenotype.
  • The earlier senescence symptoms and the transcript up-regulation of many senescence-associated genes (SAGs) in Ghd2-overexpressing transgenicrice plants under drought stress conditions indicate that Ghd2 plays essential roles in accelerating drought-induced leaf senescence in rice.
  • developmental and dark-induced leaf senescence was accelerated in the Ghd2-overexpressing rice and delayed in the ghd2 mutant.

Labs working on this gene

  • National Key Laboratory of Crop Genetic Improvement and National Center of Plant Gene Research (Wuhan), Huazhong Agricultural

University, Wuhan 430070, China

References

  1. ↑ Liu J, Shen J, Xu Y, Li X, Xiao J, Xiong L. Ghd2, a CONSTANS-like gene, confers drought sensitivity through regulation of senescence in rice. J Exp Bot. 2016 Oct;67(19):5785-5798. Epub 2016 Sep 16. PubMed PMID: 27638689; PubMed Central PMCID: PMC5066496.

Structured Information