Difference between revisions of "Os09g0529300"

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(Created page with "{{JaponicaGene| GeneName = Os09g0529300| Description = Conserved hypothetical protein| Version = NM_001070277.2 GI:297609839 GeneID:4347655| Length = 3000 bp| Definition ...")
 
 
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{{JaponicaGene|
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The rice '''''Os09g0529300''''' was reported as '''''TAC1''''' in 2017 <ref name="ref1" /> by researchers from Japan.  
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GeneName = Os09g0529300|
 
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Description = Conserved hypothetical protein|
 
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Version = NM_001070277.2 GI:297609839 GeneID:4347655|
 
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Length = 3000 bp|
 
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Definition = Oryza sativa Japonica Group Os09g0529300, complete gene.|
 
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Source = Oryza sativa Japonica Group
 
  
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  ORGANISM  Oryza sativa Japonica Group
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==Annotated Information==
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            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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===Gene Symbol===
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            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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*'''''Os09g0529300''''' '''''<=>''''' '''''TAC1'''''
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            clade; Ehrhartoideae; Oryzeae; Oryza.
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===Function===
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|
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*CSV1 supports chloroplast development under cold stress conditions, in both the early growth and tillering stages in rice.
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Chromosome = [[:category:Japonica Chromosome 9|Chromosome 9]]|
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AP = Chromosome 9:21563343..21566342|
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===Phenotypic analysis===
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CDS = 21565043..21565126,21565357..21565973,21566077..21566143,21566311..21566322|
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*The mutant exhibited chlorotic leaves during the early growth stages, and produced normal green leaves as it grew.
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GCID = <gbrowseImage1>
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*The growth of csv1 plants displayed sensitivity to low temperatures.  
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name=NC_008402:21563343..21566342
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*In addition, the mutant plants that were transferred to low temperatures at the fifth leaf stage produced chlorotic leaves subsequently
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source=RiceChromosome09
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preset=GeneLocation
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===Expression===
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</gbrowseImage1>|
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*CSV1 encodes a plastid-targeted oxidoreductase-like protein conserved among land plants, green algae, and cyanobacteria.
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GSID = <gbrowseImage2>
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*CSV1 transcripts were more abundant in immature than in mature leaves, and they did not markedly increase or decrease with temperature.
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name=NC_008402:21563343..21566342
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source=RiceChromosome09
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preset=GeneLocation
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</gbrowseImage2>|
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You can also add sub-section(s) at will.
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CDNA = <cdnaseq>atggctctaaaggtgttcaattggctgaatcggaagaagcattctaatgtcgagtattgcaccatcaatgagaacaaggccatggaagagaaggaagactctctgcgtgcaagtgtgactgagcaagacactgaggccctgctgctccgtgatgtgcttattaatggtatacttgcaattggcacgctgggccacaatgtaaactcactctgtcctgagtcctgtattgaacaagatgagcccatcatcatgtgtgatgagaaagtggaacaagagaagtgcgaagaagaaaaggctgaggctaaacaggacacaccagttacagcaccaagtgaaccggcatctgctcttgagcctgccaagatgcactcatcatcgatgaaagaagacaacttcatgtgctttgtgaaggaggaaatcctaatgcatggcatggaagtggaagatgttcctaacatccaggaacgaccacttctgatgttagagaaggtggagaaagtgagaactacacttgccgatctatttgctgcagaagcattctcatcaagtgatgcagaggataagtgttacccgaaaatcgtcattgttgctggggcatccacttcaaagcctacgtcgtgcatggagaagatgcatcacaagaagccaacaaaaccaacgtcaaagccgctgaaggctacaagaaaattaagtcgagtcatgaggaagatgttggggaagaagatccacccagagcagctcaatggacgtagcaatgcagagggccctgtcactgcataa</cdnaseq>|
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AA = <aaseq>MALKVFNWLNRKKHSNVEYCTINENKAMEEKEDSLRASVTEQDT                    EALLLRDVLINGILAIGTLGHNVNSLCPESCIEQDEPIIMCDEKVEQEKCEEEKAEAK                    QDTPVTAPSEPASALEPAKMHSSSMKEDNFMCFVKEEILMHGMEVEDVPNIQERPLLM                    LEKVEKVRTTLADLFAAEAFSSSDAEDKCYPKIVIVAGASTSKPTSCMEKMHHKKPTK                    PTSKPLKATRKLSRVMRKMLGKKIHPEQLNGRSNAEGPVTA</aaseq>|
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==Labs working on this gene==
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DNA = <dnaseqindica>1217..1300#370..986#200..266#21..32#ttcatattggttctagagagatggctctaaaggtacacagttagttcatgctgatacaccatttgtccgtgtatagtgtatgctgtaaagtacaggtctttgcagtttctgtctctcttaaacaagtgcgttggattcaactcactgttcttatatctaatgagattactggtgatttatgtttttatggcactaccaggtgttcaattggctgaatcggaagaagcattctaatgtcgagtattgcaccatcaatgagaacaagggtaaggataccaggatatctctcttttatgtaccacatgttttgttgttctcatgttgtcaactcttgtttcttctcttctattttttttcctgatggagtagccatggaagagaaggaagactctctgcgtgcaagtgtgactgagcaagacactgaggccctgctgctccgtgatgtgcttattaatggtatacttgcaattggcacgctgggccacaatgtaaactcactctgtcctgagtcctgtattgaacaagatgagcccatcatcatgtgtgatgagaaagtggaacaagagaagtgcgaagaagaaaaggctgaggctaaacaggacacaccagttacagcaccaagtgaaccggcatctgctcttgagcctgccaagatgcactcatcatcgatgaaagaagacaacttcatgtgctttgtgaaggaggaaatcctaatgcatggcatggaagtggaagatgttcctaacatccaggaacgaccacttctgatgttagagaaggtggagaaagtgagaactacacttgccgatctatttgctgcagaagcattctcatcaagtgatgcagaggataagtgttacccgaaaatcgtcattgttgctggggcatccacttcaaagcctacgtcgtgcatggagaagatgcatcacaagaagccaacaaaaccaacgtcaaagccgctgaaggctacaagaaaattaagtcgagtatggttttcttcgtctctgctttatttgttaagccttgttacattatattttactagtctggaatttattacactttgttccatggtcagtgcgccacatcttacacatatgttttaccatatagctacaactggagtaagcattatgcatctagccagtctttagtggtaaatgatcactgacctggaatgcacctttttggtttttgtcatctgtaaaataagtaggtcatgaggaagatgttggggaagaagatccacccagagcagctcaatggacgtagcaatgcagagggccctgtcactgcataatgctaggtttgtggacaaaagtttcctttctctatctggcaatttattacctagagtttttttaaagctgtctgttgaactatacagggctcaaggcccttgtgttttgcatacgattttgtacctttccaaattttcttgatttttacttggattccattgtttgtaataaaattaggttaatatctgaggtagtatttgcatagaatggataccttctaccaaagttatatttgtttgtgggtcctagagctagcatgacccacgaatcacattcaagaatatagtaattcgtttaggctacatttcactaggaatagaacatatgaatattctcaggtttaataaggcagatgcaaaaaagaactgaatagcacaggaaagtaatttttccatttcaagcttctcacagtcaaaaacaagtaatggttcaaaaattgaatattctatcacctgttgcctccatttatgtggaactcacaagagggtctaagtgctgcttgacactctgacctgtatttaaataaaatgttatcacctattgcctctgcttattattgggatctcaaaacacaatctattactgtgtatgccttggcattttttaaaatctgagctgcccccttattcttcacattttctcagaaaaccatataaacttttagataaatgaagcttttattgatctcagacaattacatcaagttgatagaaccaaactaagaacacttctggcctctgataatggaactgctgtttgtttaagtagaaagaatggtgtgtgtattttaacggttggtgattgggaattgggatgcagtgaccatggagactgtgttcttcagaatatttttaagaaatagtgttttcggtggatcctatcatggaactgcctatggtggaaagagcaatacgagttgaaacatatagggattaggaagcatgggttcggactaaaatgcattcgttcctgccatgatgcaaagcttcattcgaagcaaaatgagcacatgccatggtacagtggcgtgcaacgagcactgcaattgcacacgacgtgcatgttctgaaaaaggccagtggacactagacatgcagctaatcctcttttgatgaattctatcatgaaaccaatggattcgttgaaaatctgaacaaattgatggatttggtcccagctgtagaaaggttggcaaactcttctcgctcctgtattattgtaggctggagctatgatggaccaaatcatcagaagcaaatttcaccatatataagcatctacttttatctttttctctattttaaaatgtgatcatagtgaagttatatacattctatctgcttaacgctccacattatccaaaaaaatgcatcacactccatattgggaacacgttggtggttctgaaccaaagtcgatctcttgatgccaattttttttttgagctggttgagtagtcgaactgggaacaattactgcttgaggctacaaaatttctggccgacaatacgtcttgatcaggaactgactaaagaaattccctttcaccttttgcgggatttgttggatccatcctcacgcttcggattccttgctcaagagaaacatccatgcatatcgtcgacagcgttcgttcagtcctcttccttttgttgttggtgctgttgttattattgttattgttattgctgcctattcg</dnaseqindica>|
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*Nishina Center for Accelerator-Based Science, RIKEN, Wako, Japan
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Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001070277.2 RefSeq:Os09g0529300]|
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*Graduate School of Agricultural Science, Tohoku University, Sendai, Japan
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}}
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*Faculty of Science and Technology, Sophia University, Tokyo, Japan
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[[Category:Genes]]
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*Faculty of Science, University of the Ryukyus, Nishihara, Japan
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[[Category:Japonica mRNA]]
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[[Category:Oryza Sativa Japonica Group]]
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==References==
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[[Category:Japonica Genes]]
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<references>
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[[Category:Japonica Chromosome 9]]
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* <ref name="ref1">
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[[Category:Chromosome 9]]
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Morita R, Nakagawa M, Takehisa H, Hayashi Y, Ichida H, Usuda S, Ichinose K, Abe H, Shirakawa Y, Sato T, Fujiwara MT, Itoh RD, Abe T. Heavy-ion beam mutagenesis identified an essential gene for chloroplast development under cold stress conditions during both early growth and tillering stages in rice. Biosci Biotechnol Biochem. 2017 Feb;81(2):271-282. doi: 10.1080/09168451.2016.1249452. Epub 2016 Nov 2. PubMed PMID: 27804786.
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</ref>
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</references>
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==Structured Information==
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[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 9]]

Latest revision as of 02:10, 22 May 2017

The rice Os09g0529300 was reported as TAC1 in 2017 [1] by researchers from Japan.

Annotated Information

Gene Symbol

  • Os09g0529300 <=> TAC1

Function

  • CSV1 supports chloroplast development under cold stress conditions, in both the early growth and tillering stages in rice.

Phenotypic analysis

  • The mutant exhibited chlorotic leaves during the early growth stages, and produced normal green leaves as it grew.
  • The growth of csv1 plants displayed sensitivity to low temperatures.
  • In addition, the mutant plants that were transferred to low temperatures at the fifth leaf stage produced chlorotic leaves subsequently

Expression

  • CSV1 encodes a plastid-targeted oxidoreductase-like protein conserved among land plants, green algae, and cyanobacteria.
  • CSV1 transcripts were more abundant in immature than in mature leaves, and they did not markedly increase or decrease with temperature.


You can also add sub-section(s) at will.

Labs working on this gene

  • Nishina Center for Accelerator-Based Science, RIKEN, Wako, Japan
  • Graduate School of Agricultural Science, Tohoku University, Sendai, Japan
  • Faculty of Science and Technology, Sophia University, Tokyo, Japan
  • Faculty of Science, University of the Ryukyus, Nishihara, Japan

References

  1. ↑ Morita R, Nakagawa M, Takehisa H, Hayashi Y, Ichida H, Usuda S, Ichinose K, Abe H, Shirakawa Y, Sato T, Fujiwara MT, Itoh RD, Abe T. Heavy-ion beam mutagenesis identified an essential gene for chloroplast development under cold stress conditions during both early growth and tillering stages in rice. Biosci Biotechnol Biochem. 2017 Feb;81(2):271-282. doi: 10.1080/09168451.2016.1249452. Epub 2016 Nov 2. PubMed PMID: 27804786.

Structured Information