Difference between revisions of "Os03g0833200"

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Please input one-sentence summary here.
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The rice '''''Os03g0833200''''' was reported as '''''OsTRM13''''' in 2017 <ref name="ref1" /> by researchers from China and Australia.  
  
 
==Annotated Information==
 
==Annotated Information==
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===Gene Symbol===
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*'''''Os03g0833200''''' '''''<=>''''' '''''OsTRM13,TRM13'''''
 
===Function===
 
===Function===
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Please input function information here.
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*OsTRM13, encoding a rice tRNA nucleoside methyltransferase, is an important regulator of salt stress tolerance in rice.
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===Phenotypic analysis===
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*OsTRM13 overexpression plants displayed improved salt stress tolerance, and vice versa, OsTRM13 RNA interference (RNAi) plants showed reduced tolerance.
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*OsTRM13 complemented a yeast trm13Δ mutant, defcient in Am synthesis, and the purifed OsTrm13 protein catalysed Am nucleoside formation on tRNA-Gly-GCC in vitro.
  
 
===Expression===
 
===Expression===
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Please input expression information here.
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*OsTRM13 transcript levels increased signifcantly upon salt stress and ABA treatment, and the OsTrm13 protein was found to be located primarily to the nucleus.
  
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===Evolution===
 
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Please input evolution information here.
 
  
 
You can also add sub-section(s) at will.
 
You can also add sub-section(s) at will.
  
 
==Labs working on this gene==
 
==Labs working on this gene==
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Please input related labs here.
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*College of Plant Science and Technology, HuaZhong Agricultural University, Wuhan 430070, China
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*Biomass and Bioenergy Research Centre, HuaZhong Agricultural University, Wuhan 430070, China
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*College of Life Science, HuaZhong Agricultural University, Wuhan 430070, China
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*College of Horticulture and Forestry Sciences, HuaZhong Agricultural University, Wuhan 430070, China
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*School of Biosciences, University of Melbourne, Parkville 3010 VIC, Australia
  
 
==References==
 
==References==
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Please input cited references here.
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<references>
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* <ref name="ref1">
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Wang Y, Li D, Gao J, Li X, Zhang R, Jin X, Hu Z, Zheng B, Persson S, Chen P. The 2'-O-methyladenosine nucleoside modification gene OsTRM13 positively regulates salt stress tolerance in rice. J Exp Bot. 2017 Mar 1;68(7):1479-1491. doi: 10.1093/jxb/erx061. PubMed PMID: 28369540.
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</ref>
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</references>
  
 
==Structured Information==
 
==Structured Information==
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{{JaponicaGene|
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    [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 3]]
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GeneName = Os03g0833200|
 
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Description = Protein of unknown function DUF715 family protein|
 
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Version = NM_001186771.1 GI:297722672 GeneID:9267457|
 
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Length = 2984 bp|
 
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Definition = Oryza sativa Japonica Group Os03g0833200, complete gene.|
 
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Source = Oryza sativa Japonica Group
 
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  ORGANISM  Oryza sativa Japonica Group
 
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            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
 
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            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
 
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            clade; Ehrhartoideae; Oryzeae; Oryza.
 
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|
 
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Chromosome = [[:category:Japonica Chromosome 3|Chromosome 3]]|
 
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AP = Chromosome 3:35855281..35858264|
 
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CDS = 35855373..35855497,35855590..35855676,35855763..35856059,35856151..35856382,35857134..35857145<br>|
 
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GCID = <gbrowseImage1>
 
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name=NC_008396:35855281..35858264
 
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source=RiceChromosome03
 
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preset=GeneLocation
 
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</gbrowseImage1>|
 
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GSID = <gbrowseImage2>
 
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name=NC_008396:35855281..35858264
 
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source=RiceChromosome03
 
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preset=GeneLocation
 
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</gbrowseImage2>|
 
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CDNA = <cdnaseq>atgggccgtgctccggcgaaacggaagccctcgtcgccgccgcctcctccgcctccgggccgttgccacttctggctccctaacaagcgccgccactgcgccaacactccgctcccaacctctcagtactgtgggaaccacctcccggattccgcctccgatgccggtgcgcccttccgccgccttgtcccctgccccgtcgacccctcgcacaccgtgctcgaggagaacctggaggcgcacgtcggcaagtgccccctcaagaagcaggccgcggcgctcgcagcgcagccgttctactccaagggcatcaactccggtgggggagaaggcggtgggggtgtcacctcggccgctaagcgtgcattggtgcacaagctcaccaaggatgaattgcgcgccttgattgagaagatcaagttggcgcatgcgtcggcggccatggcaatgcgtgattcatttcttgttacagatgcttgcgacaattggatgaggaaccaggttgataggaaggtgccataccaggaaaagcatgtcacgcagcaggcatccatcattggcaatatggaggcatttggtttgctgcagaagggaggtgaggtggcggaggagaatggtgtgaaaaatgctccggcagtggtggaattcggagcagggagagggtacttgactcagatgctggcagactgctacgggattaggaatgttttcttggttgagagaagatcatacaagctcaagttgaagatttga</cdnaseq>|
 
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AA = <aaseq>MGRAPAKRKPSSPPPPPPPGRCHFWLPNKRRHCANTPLPTSQYC                    GNHLPDSASDAGAPFRRLVPCPVDPSHTVLEENLEAHVGKCPLKKQAAALAAQPFYSK                    GINSGGGEGGGGVTSAAKRALVHKLTKDELRALIEKIKLAHASAAMAMRDSFLVTDAC                    DNWMRNQVDRKVPYQEKHVTQQASIIGNMEAFGLLQKGGEVAEENGVKNAPAVVEFGA                    GRGYLTQMLADCYGIRNVFLVERRSYKLKLKI</aaseq>|
 
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DNA = <dnaseqindica>93..217#310..396#483..779#871..1102#1854..1865#atttccccttcggttgtgttcacaccgggggtctgcacttctgctccctctccgcctccggcgtctcccgctcgccgccgccgctgtcagagatgggccgtgctccggcgaaacggaagccctcgtcgccgccgcctcctccgcctccgggccgttgccacttctggctccctaacaagcgccgccactgcgccaacactccgctcccaacctctcagtaagcagctctccgagttaccttcctgcttaacccctgaaccctaaccctaaccctaacccccatcgccgcctcctccccctcctcctcaggtactgtgggaaccacctcccggattccgcctccgatgccggtgcgcccttccgccgccttgtcccctgccccgtcgacccctcgcagtaagaccccccaaaatcctataccaccgccaagtgatctccatcaccagcgtccctatccgctaatgccgccttgtcttgggcagcaccgtgctcgaggagaacctggaggcgcacgtcggcaagtgccccctcaagaagcaggccgcggcgctcgcagcgcagccgttctactccaagggcatcaactccggtgggggagaaggcggtgggggtgtcacctcggccgctaagcgtgcattggtgcacaagctcaccaaggatgaattgcgcgccttgattgagaagatcaagttggcgcatgcgtcggcggccatggcaatgcgtgattcatttcttgttacagatgcttgcgacaattggatgaggaaccaggttgataggtgtgtgtgcttaccacttttgatggtgtaagggttggatttttttgaggattttgtagtgaggagtgatttaagctggtgtgttgggcaggaaggtgccataccaggaaaagcatgtcacgcagcaggcatccatcattggcaatatggaggcatttggtttgctgcagaagggaggtgaggtggcggaggagaatggtgtgaaaaatgctccggcagtggtggaattcggagcagggagagggtacttgactcagatgctggcagactgctacgggattaggaatgttttcttggttgagagaagatcatacaagctcaaggtcagtttctctgttcatattgcctcaggatgatatctactttgagcttgtcaaacatggacagttgccattggttattcgaccttttgaaatcaatttcagcttatttttcatgtagaaatttagaaggacattacttatttctgtgccagattagaatatatctgcaatttattggcttgctattatgctcaacaatagttaattcagtattttgtgttcgttgtttaagatgtctcaactttaagtatgaaggcatgtataggttgtttacagtgattttgaatttaatgcactgtcctatctgtgtctagtgccttatgaagtttgagtttgtttcgacacattgttgctgtattcctcatgatttgcagtaaaacttttattgttttgttattttctgaaagtgcttgttgtgttaaatctaatttcagcttaggttggttctttgactgctctgttgttgccctgtttcttccttttctctgtactttctaggctgatcgaagtttgcgacaaaatgaaggcgttactttgaagcgtttgagaattgatagtaagatttcttttcattctttgaagtggtttttaggcacctttggtgctgaaggccaaatgtgtttgttatcagttcacttatatgcatgtgtgggtggtctctgtgttcttaaaacgaattgtcacattcataccctgtgatttgagatagtaagagatataagcactcataagaaacataaacacaatgcagttgaagatttgaaccttcaaggaatagaggcattgagtggacttcattatctagcaattggaaagcatctatgtggacctgcaacaggtggttctaagttctaacatatgaaatttattcatggattttatactccgacaaactgatgtataatacatgacaatgagattaactgattgcttgattgtatataatgaatattgtcctctccagatatgaccatgatgtgctgccttcatgaacggtataaccaggcacatgaaaaagaatatggcaaaagcaatctatgtggccttgctttggccacctgctgccaccatctgtgccaatggaatcactatgcaagtaaatttttttttgccagccaatgctgctaattatttttgtttaggatgtatcgtgcgattatgtcgcttacagctttgactactttatataatattataccgtcctcctttgaaaattgcagtaaaacctttagattttcttcttagagaataatgttcctgttctcattgcagataagacattcctctcagggttagggattacagaggaagatttccataccatgacttggtttagcagctgggctgtggatggtgatcacagctccccggattcctctttagaggttgaagactcatctgtagaagacaggtaagaaccattagttgaactaagccttagttttcttctacattctgatagctataaaagatcatctgttcaaatcttggtgggaagtatcacccttttaaattgttatgatgcatcatgtatgggcaaaaacatggtacagttcgttttcttgaatcattctcgaatggtgtcacggaagcttaatatgtttgtcgctacgtttttttacaggtgcggaaaagcagagaagtctgatgtggaggtcagcggaatcgatagactcatccgaagtataccagcaggggagagagctgccttggggtttatgtgtaaagatattattgatactggtaggctattatggcttagagagaagggtttagatgcagatcttgtaagctacgtcccatcaaatatttctccagagaatcacttactcattgcaaaatgtacgtctttatcaggatgaaaaagaagcttacatgttcc</dnaseqindica>|
 
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Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001186771.1 RefSeq:Os03g0833200]|
 
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}}
 
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[[Category:Genes]]
 
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[[Category:Japonica mRNA]]
 
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[[Category:Oryza Sativa Japonica Group]]
 
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[[Category:Japonica Genes]]
 
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[[Category:Japonica Chromosome 3]]
 
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[[Category:Chromosome 3]]
 

Latest revision as of 02:53, 22 May 2017

The rice Os03g0833200 was reported as OsTRM13 in 2017 [1] by researchers from China and Australia.

Annotated Information

Gene Symbol

  • Os03g0833200 <=> OsTRM13,TRM13

Function

  • OsTRM13, encoding a rice tRNA nucleoside methyltransferase, is an important regulator of salt stress tolerance in rice.

Phenotypic analysis

  • OsTRM13 overexpression plants displayed improved salt stress tolerance, and vice versa, OsTRM13 RNA interference (RNAi) plants showed reduced tolerance.
  • OsTRM13 complemented a yeast trm13Δ mutant, defcient in Am synthesis, and the purifed OsTrm13 protein catalysed Am nucleoside formation on tRNA-Gly-GCC in vitro.

Expression

  • OsTRM13 transcript levels increased signifcantly upon salt stress and ABA treatment, and the OsTrm13 protein was found to be located primarily to the nucleus.


You can also add sub-section(s) at will.

Labs working on this gene

  • College of Plant Science and Technology, HuaZhong Agricultural University, Wuhan 430070, China
  • Biomass and Bioenergy Research Centre, HuaZhong Agricultural University, Wuhan 430070, China
  • College of Life Science, HuaZhong Agricultural University, Wuhan 430070, China
  • College of Horticulture and Forestry Sciences, HuaZhong Agricultural University, Wuhan 430070, China
  • School of Biosciences, University of Melbourne, Parkville 3010 VIC, Australia

References

  1. ↑ Wang Y, Li D, Gao J, Li X, Zhang R, Jin X, Hu Z, Zheng B, Persson S, Chen P. The 2'-O-methyladenosine nucleoside modification gene OsTRM13 positively regulates salt stress tolerance in rice. J Exp Bot. 2017 Mar 1;68(7):1479-1491. doi: 10.1093/jxb/erx061. PubMed PMID: 28369540.

Structured Information