Difference between revisions of "Os03g0833200"

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(Created page with "{{JaponicaGene| GeneName = Os03g0833200| Description = Protein of unknown function DUF715 family protein| Version = NM_001186771.1 GI:297722672 GeneID:9267457| Length = 29...")
 
 
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{{JaponicaGene|
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The rice '''''Os03g0833200''''' was reported as '''''OsTRM13''''' in 2017 <ref name="ref1" /> by researchers from China and Australia.  
GeneName = Os03g0833200|
 
Description = Protein of unknown function DUF715 family protein|
 
Version = NM_001186771.1 GI:297722672 GeneID:9267457|
 
Length = 2984 bp|
 
Definition = Oryza sativa Japonica Group Os03g0833200, complete gene.|
 
Source = Oryza sativa Japonica Group
 
  
  ORGANISM  Oryza sativa Japonica Group
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==Annotated Information==
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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===Gene Symbol===
            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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*'''''Os03g0833200''''' '''''<=>''''' '''''OsTRM13,TRM13'''''
            clade; Ehrhartoideae; Oryzeae; Oryza.
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===Function===
|
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*OsTRM13, encoding a rice tRNA nucleoside methyltransferase, is an important regulator of salt stress tolerance in rice.
Chromosome = [[:category:Japonica Chromosome 3|Chromosome 3]]|
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AP = Chromosome 3:35855281..35858264|
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===Phenotypic analysis===
CDS = 35855373..35855497,35855590..35855676,35855763..35856059,35856151..35856382,35857134..35857145<br>|
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*OsTRM13 overexpression plants displayed improved salt stress tolerance, and vice versa, OsTRM13 RNA interference (RNAi) plants showed reduced tolerance.
GCID = <gbrowseImage1>
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*OsTRM13 complemented a yeast trm13Δ mutant, defcient in Am synthesis, and the purifed OsTrm13 protein catalysed Am nucleoside formation on tRNA-Gly-GCC in vitro.
name=NC_008396:35855281..35858264
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source=RiceChromosome03
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===Expression===
preset=GeneLocation
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*OsTRM13 transcript levels increased signifcantly upon salt stress and ABA treatment, and the OsTrm13 protein was found to be located primarily to the nucleus.
</gbrowseImage1>|
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GSID = <gbrowseImage2>
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name=NC_008396:35855281..35858264
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You can also add sub-section(s) at will.
source=RiceChromosome03
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preset=GeneLocation
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==Labs working on this gene==
</gbrowseImage2>|
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*College of Plant Science and Technology, HuaZhong Agricultural University, Wuhan 430070, China
CDNA = <cdnaseq>atgggccgtgctccggcgaaacggaagccctcgtcgccgccgcctcctccgcctccgggccgttgccacttctggctccctaacaagcgccgccactgcgccaacactccgctcccaacctctcagtactgtgggaaccacctcccggattccgcctccgatgccggtgcgcccttccgccgccttgtcccctgccccgtcgacccctcgcacaccgtgctcgaggagaacctggaggcgcacgtcggcaagtgccccctcaagaagcaggccgcggcgctcgcagcgcagccgttctactccaagggcatcaactccggtgggggagaaggcggtgggggtgtcacctcggccgctaagcgtgcattggtgcacaagctcaccaaggatgaattgcgcgccttgattgagaagatcaagttggcgcatgcgtcggcggccatggcaatgcgtgattcatttcttgttacagatgcttgcgacaattggatgaggaaccaggttgataggaaggtgccataccaggaaaagcatgtcacgcagcaggcatccatcattggcaatatggaggcatttggtttgctgcagaagggaggtgaggtggcggaggagaatggtgtgaaaaatgctccggcagtggtggaattcggagcagggagagggtacttgactcagatgctggcagactgctacgggattaggaatgttttcttggttgagagaagatcatacaagctcaagttgaagatttga</cdnaseq>|
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*Biomass and Bioenergy Research Centre, HuaZhong Agricultural University, Wuhan 430070, China
AA = <aaseq>MGRAPAKRKPSSPPPPPPPGRCHFWLPNKRRHCANTPLPTSQYC                    GNHLPDSASDAGAPFRRLVPCPVDPSHTVLEENLEAHVGKCPLKKQAAALAAQPFYSK                    GINSGGGEGGGGVTSAAKRALVHKLTKDELRALIEKIKLAHASAAMAMRDSFLVTDAC                    DNWMRNQVDRKVPYQEKHVTQQASIIGNMEAFGLLQKGGEVAEENGVKNAPAVVEFGA                    GRGYLTQMLADCYGIRNVFLVERRSYKLKLKI</aaseq>|
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*College of Life Science, HuaZhong Agricultural University, Wuhan 430070, China
DNA = <dnaseqindica>93..217#310..396#483..779#871..1102#1854..1865#atttccccttcggttgtgttcacaccgggggtctgcacttctgctccctctccgcctccggcgtctcccgctcgccgccgccgctgtcagagatgggccgtgctccggcgaaacggaagccctcgtcgccgccgcctcctccgcctccgggccgttgccacttctggctccctaacaagcgccgccactgcgccaacactccgctcccaacctctcagtaagcagctctccgagttaccttcctgcttaacccctgaaccctaaccctaaccctaacccccatcgccgcctcctccccctcctcctcaggtactgtgggaaccacctcccggattccgcctccgatgccggtgcgcccttccgccgccttgtcccctgccccgtcgacccctcgcagtaagaccccccaaaatcctataccaccgccaagtgatctccatcaccagcgtccctatccgctaatgccgccttgtcttgggcagcaccgtgctcgaggagaacctggaggcgcacgtcggcaagtgccccctcaagaagcaggccgcggcgctcgcagcgcagccgttctactccaagggcatcaactccggtgggggagaaggcggtgggggtgtcacctcggccgctaagcgtgcattggtgcacaagctcaccaaggatgaattgcgcgccttgattgagaagatcaagttggcgcatgcgtcggcggccatggcaatgcgtgattcatttcttgttacagatgcttgcgacaattggatgaggaaccaggttgataggtgtgtgtgcttaccacttttgatggtgtaagggttggatttttttgaggattttgtagtgaggagtgatttaagctggtgtgttgggcaggaaggtgccataccaggaaaagcatgtcacgcagcaggcatccatcattggcaatatggaggcatttggtttgctgcagaagggaggtgaggtggcggaggagaatggtgtgaaaaatgctccggcagtggtggaattcggagcagggagagggtacttgactcagatgctggcagactgctacgggattaggaatgttttcttggttgagagaagatcatacaagctcaaggtcagtttctctgttcatattgcctcaggatgatatctactttgagcttgtcaaacatggacagttgccattggttattcgaccttttgaaatcaatttcagcttatttttcatgtagaaatttagaaggacattacttatttctgtgccagattagaatatatctgcaatttattggcttgctattatgctcaacaatagttaattcagtattttgtgttcgttgtttaagatgtctcaactttaagtatgaaggcatgtataggttgtttacagtgattttgaatttaatgcactgtcctatctgtgtctagtgccttatgaagtttgagtttgtttcgacacattgttgctgtattcctcatgatttgcagtaaaacttttattgttttgttattttctgaaagtgcttgttgtgttaaatctaatttcagcttaggttggttctttgactgctctgttgttgccctgtttcttccttttctctgtactttctaggctgatcgaagtttgcgacaaaatgaaggcgttactttgaagcgtttgagaattgatagtaagatttcttttcattctttgaagtggtttttaggcacctttggtgctgaaggccaaatgtgtttgttatcagttcacttatatgcatgtgtgggtggtctctgtgttcttaaaacgaattgtcacattcataccctgtgatttgagatagtaagagatataagcactcataagaaacataaacacaatgcagttgaagatttgaaccttcaaggaatagaggcattgagtggacttcattatctagcaattggaaagcatctatgtggacctgcaacaggtggttctaagttctaacatatgaaatttattcatggattttatactccgacaaactgatgtataatacatgacaatgagattaactgattgcttgattgtatataatgaatattgtcctctccagatatgaccatgatgtgctgccttcatgaacggtataaccaggcacatgaaaaagaatatggcaaaagcaatctatgtggccttgctttggccacctgctgccaccatctgtgccaatggaatcactatgcaagtaaatttttttttgccagccaatgctgctaattatttttgtttaggatgtatcgtgcgattatgtcgcttacagctttgactactttatataatattataccgtcctcctttgaaaattgcagtaaaacctttagattttcttcttagagaataatgttcctgttctcattgcagataagacattcctctcagggttagggattacagaggaagatttccataccatgacttggtttagcagctgggctgtggatggtgatcacagctccccggattcctctttagaggttgaagactcatctgtagaagacaggtaagaaccattagttgaactaagccttagttttcttctacattctgatagctataaaagatcatctgttcaaatcttggtgggaagtatcacccttttaaattgttatgatgcatcatgtatgggcaaaaacatggtacagttcgttttcttgaatcattctcgaatggtgtcacggaagcttaatatgtttgtcgctacgtttttttacaggtgcggaaaagcagagaagtctgatgtggaggtcagcggaatcgatagactcatccgaagtataccagcaggggagagagctgccttggggtttatgtgtaaagatattattgatactggtaggctattatggcttagagagaagggtttagatgcagatcttgtaagctacgtcccatcaaatatttctccagagaatcacttactcattgcaaaatgtacgtctttatcaggatgaaaaagaagcttacatgttcc</dnaseqindica>|
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*College of Horticulture and Forestry Sciences, HuaZhong Agricultural University, Wuhan 430070, China
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001186771.1 RefSeq:Os03g0833200]|
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*School of Biosciences, University of Melbourne, Parkville 3010 VIC, Australia
}}
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[[Category:Genes]]
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==References==
[[Category:Japonica mRNA]]
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<references>
[[Category:Oryza Sativa Japonica Group]]
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* <ref name="ref1">
[[Category:Japonica Genes]]
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Wang Y, Li D, Gao J, Li X, Zhang R, Jin X, Hu Z, Zheng B, Persson S, Chen P. The 2'-O-methyladenosine nucleoside modification gene OsTRM13 positively regulates salt stress tolerance in rice. J Exp Bot. 2017 Mar 1;68(7):1479-1491. doi: 10.1093/jxb/erx061. PubMed PMID: 28369540.
[[Category:Japonica Chromosome 3]]
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</ref>
[[Category:Chromosome 3]]
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</references>
 +
 
 +
==Structured Information==
 +
    [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 3]]

Latest revision as of 02:53, 22 May 2017

The rice Os03g0833200 was reported as OsTRM13 in 2017 [1] by researchers from China and Australia.

Annotated Information

Gene Symbol

  • Os03g0833200 <=> OsTRM13,TRM13

Function

  • OsTRM13, encoding a rice tRNA nucleoside methyltransferase, is an important regulator of salt stress tolerance in rice.

Phenotypic analysis

  • OsTRM13 overexpression plants displayed improved salt stress tolerance, and vice versa, OsTRM13 RNA interference (RNAi) plants showed reduced tolerance.
  • OsTRM13 complemented a yeast trm13Δ mutant, defcient in Am synthesis, and the purifed OsTrm13 protein catalysed Am nucleoside formation on tRNA-Gly-GCC in vitro.

Expression

  • OsTRM13 transcript levels increased signifcantly upon salt stress and ABA treatment, and the OsTrm13 protein was found to be located primarily to the nucleus.


You can also add sub-section(s) at will.

Labs working on this gene

  • College of Plant Science and Technology, HuaZhong Agricultural University, Wuhan 430070, China
  • Biomass and Bioenergy Research Centre, HuaZhong Agricultural University, Wuhan 430070, China
  • College of Life Science, HuaZhong Agricultural University, Wuhan 430070, China
  • College of Horticulture and Forestry Sciences, HuaZhong Agricultural University, Wuhan 430070, China
  • School of Biosciences, University of Melbourne, Parkville 3010 VIC, Australia

References

  1. Wang Y, Li D, Gao J, Li X, Zhang R, Jin X, Hu Z, Zheng B, Persson S, Chen P. The 2'-O-methyladenosine nucleoside modification gene OsTRM13 positively regulates salt stress tolerance in rice. J Exp Bot. 2017 Mar 1;68(7):1479-1491. doi: 10.1093/jxb/erx061. PubMed PMID: 28369540.

Structured Information