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| − | {{JaponicaGene|
| + | The rice '''''Os01g0612700''''' was reported as '''''OsLOL5''''' in 2016 <ref name="ref1" /> by researchers from China. |
| − | GeneName = Os01g0612700|
| |
| − | Description = Zinc finger, LSD1-type domain containing protein|
| |
| − | Version = NM_001050093.1 GI:115438513 GeneID:4325320|
| |
| − | Length = 5211 bp|
| |
| − | Definition = Oryza sativa Japonica Group Os01g0612700, complete gene.|
| |
| − | Source = Oryza sativa Japonica Group
| |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| + | |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | ==Annotated Information== |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| + | ===Gene Symbol=== |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| + | *'''''Os01g0612700''''' '''''<=>''''' '''''LOL5''''' '''''OsLOL2''''' '''''OsLOL5''''' '''''OsLSD5''''' |
| − | |
| + | |
| − | Chromosome = [[:category:Japonica Chromosome 1|Chromosome 1]]|
| + | ===Function=== |
| − | AP = Chromosome 1:25951136..25956346|
| + | *'''OsLOL2''' is involved in rice growth and disease resistance. |
| − | CDS = 25951207..25953481,25954472..25954579,25955068..25955177,25955943..25956017|
| + | *The '''OsLOL2''' gene is predicted to encode a polypeptide of 163 amino acids with two LSD1-like zinc Wnger domains with 74.5% identity to those of LSD1. |
| − | GCID = <gbrowseImage1>
| + | <br> |
| − | name=NC_008394:25951136..25956346
| + | ===Expression=== |
| − | source=RiceChromosome01
| + | *Expression of '''OsLOL2''' were more resistant to rice bacterial blight, while antisense transgenic lines were less resistant to rice bacterial blight. |
| − | preset=GeneLocation
| + | <br> |
| − | </gbrowseImage1>| | + | ==Labs working on this gene== |
| − | GSID = <gbrowseImage2>
| + | *State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100080, People’s Republic of China |
| − | name=NC_008394:25951136..25956346
| + | *Graduate School of Chinese Academy of Sciences,Beijing 100039, People’s Republic of China |
| − | source=RiceChromosome01
| + | <br> |
| − | preset=GeneLocation
| + | ==References== |
| − | </gbrowseImage2>| | + | <references> |
| − | CDNA = <cdnaseq>atgcaagaacaagctgctggttcagcgcttgccatgttggtaacttacggggagactgatacctcagcagtcagtgtatctccagtactggagagtggggagccagatgcagcccagattgatgtagtagcagggatgcaagaagaagctcctggttcaatgttggccatggaggtaacgtacagggaggttgatgctgcaacagtcagtgtgtctccggtattggagagtgtggagccagatgcagccaagatcgatgtagtagcaaggatgcaagaagaagctcctggttcaaagcttgccatggaggtaatgtacggggagactggtaccgcagcagtcagtgtgcctctggtattggagagtagggaagaggggtcacttcaagaatcaatgcagagaccatcttctcccacaatgaacattgagcaagagtcaatgcagagaccattttctcccacaattggcactgagacaagttcgccagagatggctcctgctggatctgagaactgtaaagtatcatggttgccgttgccccctcctacaccacttggcgaatcaatgccctccttgccagtcgcagctgcccccaaggttttattggtgatgccggaggaagcggttgagtcagtcccttcatcggaagctctggatgttgaaaaacctgcctccatcacacaggctgagcccagctcacctaatacgccaccgccaggatttgagaattttaagtcgtcatggttgccgctacccacgactcctcccccagttgaaaccactgatgtcttgccagatgtggtggttaccaaggcagtggaagcacccattgaggaagtgtctaggccattgccagctttggaggtgacaaacatggagtcagacactgtcctcagtatcttgcccacaacagtcttgccaacagaagggactgagggactactgcaacaaccactattgagacccccttctccagtggtgcaatctgaaccatgtttgcaaaatgagatggcacctccagggttcgagaattttaagtcatcatctgaaccatgttcagcagaggagatagcacctccagggtccgataatttcaaatcatcatctgaaccatgtttaccagaggagatggcacctccagggtttgaaaattttaagtcatcatctgaaccatgttcacaagaggagatggcacctccagggtttgagaattttaagtcatcatggccaccacttcccactctgccccaaactgtaccagatgcagccgcagcggatgctttggcagcaacagtggaagaagcagctgggccaccacctgcattggagttggaggcaatggatgtggacatggatgccatacatccaccaccgctgccttttgacagtggagtggagtcattgcaaaagccactgccaagagcaccttctcccataatgcaagaagcgccctgttcaccagatagggcaccgccagggtttgaaacctataagtcatcacagttactgctaccatctccatctctggcacaaaccacaaatgtgcgacaagatcaatcggtaactgaacctgtgtctgtgatagaggaagcccctcagctactgcactcagtggaggtaatgggtgtacatatggatgcagtacctccattgctaccatcatctgaaagtggagcagatgggctatctccgcagcaattcgcgcaacctcctcctgcagaaaaggatacaacaacctgtttgccagatatggtgcattcaggatgtgacaattcagagccctctcagcttctgtcactgcctgctgttatttctccagttcagaccccagatggcttggctgatgttcctgccattgacagggttgcagtggcattggaagaatcgcctcagcgaccgcttgtatcaggggaaatggaagctggcacagtgcccattcggtcatcaccactgaagaatatttctgaggggtcactgccacaactagaatcagagtcacattctcctacatcacaggctgcagatagcttactagatgcatctgactcaaagtctgtggctgtggcctcagaggagatgtctcagctaccacttgcatcgcaggcaactactacagaccttgtcagtacaactgcaatgcagccacaatctgagggtatagtggatgagtcattgcagcctcagcatccaccctcttctaccgcacatgattcaccttgtttacaggactctgtgccattggtgccaccaccaccttccccttacctaaataaagaagtaggtcaaatggtatgtggaagctgccgtattcttcttgcttattttagaggtgctggttatgttcactgtacttgttgccagacaatgaactatgtattggaagctcatgaagttggtaaggtgcattgtggacactgtgcgacattattgatgtatccttttggtgcgcctgctgttaagtgctcgttgtgcctctttgtcactgaaattggagagcggaatgttcgccgtcggttatcaatcgagcaacccacaagaactaactcatcagggctagctgaagcctga</cdnaseq>|
| + | <ref name="ref1"> |
| − | AA = <aaseq>MQEQAAGSALAMLVTYGETDTSAVSVSPVLESGEPDAAQIDVVA GMQEEAPGSMLAMEVTYREVDAATVSVSPVLESVEPDAAKIDVVARMQEEAPGSKLAM EVMYGETGTAAVSVPLVLESREEGSLQESMQRPSSPTMNIEQESMQRPFSPTIGTETS SPEMAPAGSENCKVSWLPLPPPTPLGESMPSLPVAAAPKVLLVMPEEAVESVPSSEAL DVEKPASITQAEPSSPNTPPPGFENFKSSWLPLPTTPPPVETTDVLPDVVVTKAVEAP IEEVSRPLPALEVTNMESDTVLSILPTTVLPTEGTEGLLQQPLLRPPSPVVQSEPCLQ NEMAPPGFENFKSSSEPCSAEEIAPPGSDNFKSSSEPCLPEEMAPPGFENFKSSSEPC SQEEMAPPGFENFKSSWPPLPTLPQTVPDAAAADALAATVEEAAGPPPALELEAMDVD MDAIHPPPLPFDSGVESLQKPLPRAPSPIMQEAPCSPDRAPPGFETYKSSQLLLPSPS LAQTTNVRQDQSVTEPVSVIEEAPQLLHSVEVMGVHMDAVPPLLPSSESGADGLSPQQ FAQPPPAEKDTTTCLPDMVHSGCDNSEPSQLLSLPAVISPVQTPDGLADVPAIDRVAV ALEESPQRPLVSGEMEAGTVPIRSSPLKNISEGSLPQLESESHSPTSQAADSLLDASD SKSVAVASEEMSQLPLASQATTTDLVSTTAMQPQSEGIVDESLQPQHPPSSTAHDSPC LQDSVPLVPPPPSPYLNKEVGQMVCGSCRILLAYFRGAGYVHCTCCQTMNYVLEAHEV GKVHCGHCATLLMYPFGAPAVKCSLCLFVTEIGERNVRRRLSIEQPTRTNSSGLAEA</aaseq>|
| + | Guan QJ, Ma HY, Wang ZJ, Wang ZY, Bu QY, Liu SK. A rice LSD1-like-type ZFP gene OsLOL5 enhances saline-alkaline tolerance in transgenic Arabidopsis thaliana, yeast and rice. BMC Genomics. 2016 Feb 27;17:142. doi:10.1186/s12864-016-2460-5. PubMed PMID: 26920613; PubMed Central PMCID:PMC4769587. |
| − | DNA = <dnaseqindica>72..2346#3337..3444#3933..4042#4808..4882#cagcagccagtgtgtctccagtattggacagtggggatccagatgcagctgaggttgatgtagtagtagggatgcaagaacaagctgctggttcagcgcttgccatgttggtaacttacggggagactgatacctcagcagtcagtgtatctccagtactggagagtggggagccagatgcagcccagattgatgtagtagcagggatgcaagaagaagctcctggttcaatgttggccatggaggtaacgtacagggaggttgatgctgcaacagtcagtgtgtctccggtattggagagtgtggagccagatgcagccaagatcgatgtagtagcaaggatgcaagaagaagctcctggttcaaagcttgccatggaggtaatgtacggggagactggtaccgcagcagtcagtgtgcctctggtattggagagtagggaagaggggtcacttcaagaatcaatgcagagaccatcttctcccacaatgaacattgagcaagagtcaatgcagagaccattttctcccacaattggcactgagacaagttcgccagagatggctcctgctggatctgagaactgtaaagtatcatggttgccgttgccccctcctacaccacttggcgaatcaatgccctccttgccagtcgcagctgcccccaaggttttattggtgatgccggaggaagcggttgagtcagtcccttcatcggaagctctggatgttgaaaaacctgcctccatcacacaggctgagcccagctcacctaatacgccaccgccaggatttgagaattttaagtcgtcatggttgccgctacccacgactcctcccccagttgaaaccactgatgtcttgccagatgtggtggttaccaaggcagtggaagcacccattgaggaagtgtctaggccattgccagctttggaggtgacaaacatggagtcagacactgtcctcagtatcttgcccacaacagtcttgccaacagaagggactgagggactactgcaacaaccactattgagacccccttctccagtggtgcaatctgaaccatgtttgcaaaatgagatggcacctccagggttcgagaattttaagtcatcatctgaaccatgttcagcagaggagatagcacctccagggtccgataatttcaaatcatcatctgaaccatgtttaccagaggagatggcacctccagggtttgaaaattttaagtcatcatctgaaccatgttcacaagaggagatggcacctccagggtttgagaattttaagtcatcatggccaccacttcccactctgccccaaactgtaccagatgcagccgcagcggatgctttggcagcaacagtggaagaagcagctgggccaccacctgcattggagttggaggcaatggatgtggacatggatgccatacatccaccaccgctgccttttgacagtggagtggagtcattgcaaaagccactgccaagagcaccttctcccataatgcaagaagcgccctgttcaccagatagggcaccgccagggtttgaaacctataagtcatcacagttactgctaccatctccatctctggcacaaaccacaaatgtgcgacaagatcaatcggtaactgaacctgtgtctgtgatagaggaagcccctcagctactgcactcagtggaggtaatgggtgtacatatggatgcagtacctccattgctaccatcatctgaaagtggagcagatgggctatctccgcagcaattcgcgcaacctcctcctgcagaaaaggatacaacaacctgtttgccagatatggtgcattcaggatgtgacaattcagagccctctcagcttctgtcactgcctgctgttatttctccagttcagaccccagatggcttggctgatgttcctgccattgacagggttgcagtggcattggaagaatcgcctcagcgaccgcttgtatcaggggaaatggaagctggcacagtgcccattcggtcatcaccactgaagaatatttctgaggggtcactgccacaactagaatcagagtcacattctcctacatcacaggctgcagatagcttactagatgcatctgactcaaagtctgtggctgtggcctcagaggagatgtctcagctaccacttgcatcgcaggcaactactacagaccttgtcagtacaactgcaatgcagccacaatctgagggtatagtggatgagtcattgcagcctcagcatccaccctcttctaccgcacatgattcaccttgtttacaggactctgtgccattggtgccaccaccaccttccccttacctaaataaaggttagtatattgcatctcacttcctctaattccatgtctatataactgctattgtttgtgttgacttagtatttgtgatgagtttgggggtctttggaaggtgaaaatgagtcagtgtgagattggatcaaacaccatgcagaggctctgagatgaccaagtttctcaggaaggtctatttcattgataccctgacttgagtacataggacgtccacgtacatggctcactaagctaaagaaacatcttatcctaaatatgattctcttaccactaacaggaaacacatttctatcttatctattctaacctcttaacttggcttccttgatgttcaaggacaactggacaacctggccagccttgcgtgctcatgctactgggtcgtgtttggagttctacgaacagttttctttccattgattaatcatgtaccaatcatatgcccatcttagactatataagtttcctataatttgtgaaaaaagttggcttgttttttgtgattctcagtctttgatatgattttgaaagaagaatgctcatgcaaactgtggctagcagatataaatttaatgaactagttgcgggaatcagcattaagtccttaaagtttaccaagcatgtaatgtgctttcattcattcaaaaaagcatgtaatatgctcacttatatctccattgatcccctatttgtgtatacctggtccctcttaagacagtttcagccaaaatgatgaagtttgattgcaattgtgaaatatagtactaacttttttttagagcaatagatgaaaggaatatactatgcttctgtgtaccttctctttggatgttatccaatccctcaatatcaattcatacatagttgtgaaccaaagaagtcagcttttcacccataaataaatctggggctagtatataagtaatccggtgtaattctctctctctctctctgagcataagtaacctctgttgctaacttgtacagaagtaggtcaaatggtatgtggaagctgccgtattcttcttgcttattttagaggtgctggttatgttcactgtacttgttgccagacaatgaactatgtattggaaggtgcgtactatttctcatttgcccaacagtgttttacttttgttatgccccatataatttttattttgtctttcaacacctatagatatcagccatcttgtatcttacttctgtggaaatacttactgaatactgaacatgctttttctcaaaaatttgccttctgctactgtctaaattatgtgtaagaagtatggttggttacatatttcaacattggaccactcaatagagaactggagaattttgcccttgcctttataatactatttgttcatgcacaccctctaaagctttttcatgcaacacttctgcaaaatatggatgccatttgcgcaaaatttatctcgtctttgtctttccttttgaagcacggctgtccttaatatttccatgtattatagcttttaccaaatactgatgtaccgatgtgtgtatatatgcatcttcttacccttgcatgggttttccccctatgtttgttgcagctcatgaagttggtaaggtgcattgtggacactgtgcgacattattgatgtatccttttggtgcgcctgctgttaagtgctcgttgtgcctctttgtcactgaaattggagtaagtgaactatggcttgtgataaatttacttgctatatgtgcttatttgtgataaatatgttgaaaaagaaggtaatgctacattgaaaaaaagagagagagaactgattatgtactgtgcatgttggtcgagttggtttactttctaatgaatatgactgccttagattctagatttcccatgcatccggttggctatatgagctaaatcactaatcctgacaggcattatttgctatgtaagcatgttgtactgagacctattgtttatcaaatattaaggtgatactacataaacttcaatatttgctctaaaaggctagaaatccccatattaatcagatagagggagggaggttaaccagatagatatatggtagatggaaaggagggatctgaagtctgaagcatgttctgagcatgactcaatatgctcctttaataaaatgtcgtggctcaggtgcttcatatataatagacatggtttgctttatctgaatcccagtcaacacatgaagcttttatcttcctccttgtctcagataatcatgccgtgcactatgatagatctgaagcactacgaactgtctttgactgtgactccactttgatgccttcagctttggttgcctgcaatcctttgctgttcccacgctttcattcagtagatttcttgatacttagactgtcgttgcagtgcataattgttcagctatttgccaatacattgatctccttcaattctttgttccttttgttccaggagcggaatgttcgccgtcggttatcaatcgagcaacccacaagaactaactcatcagggctagctgaagcctgatcagttctggtcccatgtacccatcggattccaagaaagcttcaaatgctaatgtggatgaaaggaacagaatgttcgcccttcgtcatgaggtgtgggcatgaaagttcaagatggtatggacaagccaaagtgtacaaagatagcgttttttttttcattgatgtagacaggaaaggtgaccttgttagtacgactagatctcctttgaaagggaaaataaaagaaaaatagttcgattcaatctggaggtgatatgcgtatgtcatatgaatgataacagagtagttttcagatggttctttcgcggtgaccatcatgttgccccc</dnaseqindica>|
| + | </ref> |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001050093.1 RefSeq:Os01g0612700]|
| + | </references> |
| − | }}
| + | <br> |
| − | [[Category:Genes]] | + | |
| − | [[Category:Japonica mRNA]]
| + | ==Structured Information== |
| − | [[Category:Oryza Sativa Japonica Group]] | + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 1]] |
| − | [[Category:Japonica Genes]] | |
| − | [[Category:Japonica Chromosome 1]]
| |
| − | [[Category:Chromosome 1]]
| |
