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| − | {{JaponicaGene|
| + | The rice Os10g0206800 was reported as '''''OsFRDL2''''' in 2016 by researchers from Japan. <ref name="ref1" /> |
| − | GeneName = Os10g0206800|
| |
| − | Description = Multi antimicrobial extrusion protein MatE family protein|
| |
| − | Version = NM_001070849.1 GI:115481441 GeneID:4348274|
| |
| − | Length = 5850 bp|
| |
| − | Definition = Oryza sativa Japonica Group Os10g0206800, complete gene.|
| |
| − | Source = Oryza sativa Japonica Group
| |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| + | ==Annotated Information== |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | ===Gene Symbol=== |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| + | *'''''Os10g0206800''''' '''''<=>''''' '''''OsFRDL2,FRDL2''''' |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| + | |
| − | |
| + | ===Function=== |
| − | Chromosome = [[:category:Japonica Chromosome 10|Chromosome 10]]|
| + | *OsFRDL2 is contribute to high Al tolerance is relatively small in rice. |
| − | AP = Chromosome 10:7307369..7313218|
| + | |
| − | CDS = 7307494..7307606,7307696..7307817,7309009..7309215,7309297..7309484,7309886..7310021<br>,7310366..7310462,7310593..7310693,7311037..7311200,7311422..7311610<br>,7311798..7311892,7311982..7312104,7312828..7312906|
| + | ===Expression=== |
| − | GCID = <gbrowseImage1>
| + | *OsFRDL2 showed an efflux transport activity for citrate when it was expressed in both Xenopus oocytes and cultured tobacco cells. |
| − | name=NC_008403:7307369..7313218
| + | *OsFRDL2 was mainly expressed in the roots and its expression was not induced by iron (Fe) deficiency, but it was rapidly up-regulated by aluminum (Al). |
| − | source=RiceChromosome10
| + | |
| − | preset=GeneLocation
| + | ===Phenotypic analysis=== |
| − | </gbrowseImage1>|
| + | *Knockout of OsFRDL2 decreased Al-induced secretion of citrate from the roots, but did not affect the internal citrate concentration. |
| − | GSID = <gbrowseImage2>
| + | *The Al-induced inhibition of root elongation was similar between the OsFRDL2 knockout line and its wild-type rice. |
| − | name=NC_008403:7307369..7313218
| + | *Knockout of OsFRDL2 did not affect the translocation of Fe from the roots to the shoots. |
| − | source=RiceChromosome10
| + | *A double mutant between osfrdl2 and osfrdl4 or osfrdl1 did not further decrease the Al-induced citrate secretion and Fe translocation compared with the single mutant. |
| − | preset=GeneLocation
| + | You can also add sub-section(s) at will. |
| − | </gbrowseImage2>| | + | |
| − | CDNA = <cdnaseq>atgaatggggagagcctcctcgaccgcagctcctccgccgacgccgccatgaacgacgccgtgcccggccaccgccaccaccacccgcttagcgtcttcctccgggacgccaggttggcgttcaggtgggacgagctcgggagggagatcatggggattgcggtgcccggcgcgctcgccctcatggctgacccggtcgcctcgctcgtcgacaccgccttcattggccacataggcccagttgaacttgcagctgttggtgtatctattgccgtgtttaatcaagtatcaaggattgcaatatttccccttgtcagtgtcacgacatcatttgttgcggaggaagatgctacatccagtgacagagaaaaatatgaaataaatggcgagaatgaattcaatgtttcagacagtgaaatggaagagctggtttctcatgaagaggctagtgctgctcccagtaagtcgtctttcgaaactgactcaagtgatgtcaaaattgaacataagcggaaaaacattccatcggtgtctacagcattactacttggtggggtgctcggccttttacaagcactgcttcttgttatttgcgcaaaacctctcttaggctacatgggtgtgaaacagggctctgcaatgttgatgccagcactaaagtacttggtagtcagatctcttggtgctcctgctgtgcttttatctctggcaatgcaaggggtatttcgtggacttaaagatacaaagacacctctttatgcaactgtggctggagatgcaaccaacatagttttggatccaatatttatgtttgtcttccagtatggtgtcagtggtgcagcaattgctcatgttatatcacaatatttcattgcatccattctcttatggaggttaaggctacatgttgacctacttccacccagctttaaacatatgcagttcagtcgattccttaaaaacggtttcctattacttgccagagttattgctgcaacatgctgcgtgacactatctgcatcaatggctgcacggctaggttcagttccaatggctgcatttcagatttgcttgcagatctggctggcttcgtctcttcttgctgatggattggcttttgcaggacaggctatacttgcaagtgcatttgctcgtcaagaccattctaaggccgcagccacagcttctcgtatattgcagctgggattggttttaggacttctcctaagcatttttcttggcattggcctccgtttaggatcaaggttatttactgatgaccaggatgttctacatcatatttacctaggcataccgtttgtctctctgactcaaccaatcaatgcgttagcttttgtttttgatggtatcaattatggagcatcagattttggatatgctgcttattcaatgattcttgtggcaattgtcagcatcatcttcatagtcacactagcaagttacaatggttttgtcggaatttggatagctttgacagtctacatgagcctccgaatgcttgcaggattcttaaggatagggactgcacgaggaccatggactttctatgcagctcaacgcatgcattctcatgaggtggttggactttgttga</cdnaseq>|
| + | ==Labs working on this gene== |
| − | AA = <aaseq>MNGESLLDRSSSADAAMNDAVPGHRHHHPLSVFLRDARLAFRWD ELGREIMGIAVPGALALMADPVASLVDTAFIGHIGPVELAAVGVSIAVFNQVSRIAIF PLVSVTTSFVAEEDATSSDREKYEINGENEFNVSDSEMEELVSHEEASAAPSKSSFET DSSDVKIEHKRKNIPSVSTALLLGGVLGLLQALLLVICAKPLLGYMGVKQGSAMLMPA LKYLVVRSLGAPAVLLSLAMQGVFRGLKDTKTPLYATVAGDATNIVLDPIFMFVFQYG VSGAAIAHVISQYFIASILLWRLRLHVDLLPPSFKHMQFSRFLKNGFLLLARVIAATC CVTLSASMAARLGSVPMAAFQICLQIWLASSLLADGLAFAGQAILASAFARQDHSKAA ATASRILQLGLVLGLLLSIFLGIGLRLGSRLFTDDQDVLHHIYLGIPFVSLTQPINAL AFVFDGINYGASDFGYAAYSMILVAIVSIIFIVTLASYNGFVGIWIALTVYMSLRMLA GFLRIGTARGPWTFYAAQRMHSHEVVGLC</aaseq>|
| + | *Institute of Plant Science and Resources, Okayama University, Chuo 2-20-1, Kurashiki,710-0046 Japan. |
| − | DNA = <dnaseqindica>126..238#328..449#1641..1847#1929..2116#2518..2653#2998..3094#3225..3325#3669..3832#4054..4242#4430..4524#4614..4736#5460..5538#gtcctccaaagcaccagcgccggcaggagggccccccgccggattcgattcccggcacgtccttctcctccctttctcgcgggcgccgcacgccccttccccctcctcctcctcctcttggtctgatgaatggggagagcctcctcgaccgcagctcctccgccgacgccgccatgaacgacgccgtgcccggccaccgccaccaccacccgcttagcgtcttcctccgggacgccaggttgttaaccgagtcatcggtctatcgatttttttccctttccatctatttatctctgagtttttattttcttgggggtcctgttgcaggttggcgttcaggtgggacgagctcgggagggagatcatggggattgcggtgcccggcgcgctcgccctcatggctgacccggtcgcctcgctcgtcgacaccgccttcattggccacataggtttgcttctcttctctccttattttccttattttttttaattttttccccttactgctgacttcgttgtgaagtttccaccaccagttctgacctgctccaggtgggattggaacgtactctgttctacccttcggccttggtcgcacgatgtaattttaatactactagatttcttttcagcttggagcaaacctaacccagttcattccgttagtggtaggaattaaggtgtggtgtttggtcctgactattacgaaatttatctggctgtgctggtaatagatctcgcttccataatgtcgaacctaaaaaaatgaagcagtagtttgtaaagtagtagagtcttttgccgacatcgtggctgatggttgccattgtttagaatattgatactaaccctaatatttcattgctaagtattaaaacaaaattttaatgctttcaattcaagggttagtgtgtagttatgtagtacggtgcccttaaatgtcttaacatcaaagttgattgtcagataggttttttattgatgaattctgtaagaaagcaatcaaaaagcataaagttggataatgaccattgtttaaggtcaacgcaaactggccatattttatattcagcaagtatgtatggtaatactaatgaatcaatgtcatgtaaaatagatgtagaattaattactgaagtttagaccattactaattcgtagagaattccaattggctttgatttatatttagtttagctactttatgtcttgaaattgagtttagatcttctacggctaatttgctttcttgatgtgcttacatttgacttcaccagttagctaagaaagtgcttctacgttatcaagtagtaatttgccaagaagaaaaacagcaccccctgcagcagccacccatggcttttgtgttagtcaacccatacattttttagtttgtaatgtcaaactgcctactagatgttggcactagactacatgttcaccgttatcccaaataagattattaatgaacttaatattgctctttcatttatttttatttatacatttcagcctgctttgaattttgtatgaactttacttcttactgtattgtaatagaaaaaaagggacacattctgattttcaagtctttgacttattttgtctcaagttaatttgattccttttgttcaaaacaggcccagttgaacttgcagctgttggtgtatctattgccgtgtttaatcaagtatcaaggattgcaatatttccccttgtcagtgtcacgacatcatttgttgcggaggaagatgctacatccagtgacagagaaaaatatgaaataaatggcgagaatgaattcaatgtttcagacagtgaaatggaagagctggtttctcatgaaggtaaaacagttctaatcttcttttaagaaacattagaaattaaacaatgcttatttctttgacactcaatcttgccaccagaggctagtgctgctcccagtaagtcgtctttcgaaactgactcaagtgatgtcaaaattgaacataagcggaaaaacattccatcggtgtctacagcattactacttggtggggtgctcggccttttacaagcactgcttcttgttatttgcgcaaaacctctcttaggctacatgggtgtgaaacaggtatatgttccttcataccatttcctttgtggtaaaatcaattattttgtctaatcgtaaagatgtaaacatcaaggattgagtcatcattttttcctgtttttgaaaaatctatcaatggatgttctttatcaaaatttaataactgagaactcatctattattaagtttagctctggatagttggatgtgcacatatatattgtaagtacgaagtatcactaatggaacttaatttttcatgtatattatgatctgaatgaaattgtagcaacaaactagtgtattggtgagtttcatcattaaggacttctatgattttggttttttaattctagaatacactgtttatttattatttttcacatcggagtcctttttctactgaaattttctgatagggctctgcaatgttgatgccagcactaaagtacttggtagtcagatctcttggtgctcctgctgtgcttttatctctggcaatgcaaggggtatttcgtggacttaaagatacaaagacacctctttatgcaactggtacagtatttccttgactgcagaatggtgtatgctgtatataatcaaaccaagtgtctaaaataatgattatttaaactgtcccttcaaagtcattctacttgtggtggaatactttaatactttcttttaagttcgcaaagttaaggcaagatgacatgatatgaactggtgggatcaaacacttatgacctaccgtacattattcatgtaataaaatgcatgactgtagaacatgtgtctcttgtagatggtatatttaaatgcatgagatgttacgattagtgaataatttgcctcaggataatacatatacctaatggtgttaactctttttataccagtggctggagatgcaaccaacatagttttggatccaatatttatgtttgtcttccagtatggtgtcagtggtgcagcaattgctcatgttatatcacagtatgtagcacaattctctcttataatatcattgttttttacccgtgaagttggatgacaaactatgtccaaaagtatataatacctttcttctacctcttgtgatagtgtatggtggaaaattctgcagatatttcattgcatccattctcttatggaggttaaggctacatgttgacctacttccacccagctttaaacatatgcagttcagtcgattccttaaaaacggtaattcttttctaatatttttgggttccaactaagacatggccctttttttttgccacaaaccattttacaatacctggtcttcataggatgataattattaatatccattttctcgtatgcattcttagatttgatttttttcattgaaagtgcatacttaattcaaaacagcaaattaactatttatttccttttttacatttgggttatgcctgcttgactttcacattgttttagcacataatttcattctaaacgcaagttgcccttgcttgtttcaattattttacttgaaacatttctggttatataaaactcgttctcacttttcacacttcaggtttcctattacttgccagagttattgctgcaacatgctgcgtgacactatctgcatcaatggctgcacggctaggttcagttccaatggctgcatttcagatttgcttgcagatctggctggcttcgtctcttcttgctgatggattggcttttgcaggacaggtaagggaacagttgtctccactcactccaatgctgacaatactgaaggtttctattgaaccttcattttaatgaaaaattctacctcagtaactgcaccaaagggtatataattgagttttctaaattatctaacgttggaaacagataatgagatgtatcagcatgaactgaaatgaatttgcattttgttcttatgcatctggatcatattttgacaggctatacttgcaagtgcatttgctcgtcaagaccattctaaggccgcagccacagcttctcgtatattgcagctgggattggttttaggacttctcctaagcatttttcttggcattggcctccgtttaggatcaaggttatttactgatgaccaggatgttctacatcatatttacctaggcataccggtaaactttctttatactgatgccaaaataattacaattttaagtcatattgtagttaggattcctcagttgtgtgcgggagcctgatgttcctttatgatatctttcctactgtgcattgggatgcctgcctactgtcagagttacctggaatttttttaactaaagagttatttttcctgttcagtttgtctctctgactcaaccaatcaatgcgttagcttttgtttttgatggtatcaattatggagcatcagattttggatatgctgcttattcaatggcaagtcaactagtcaacacctatgtccttctatctgtattttcaatcctttttttttcacatatttttgttgaattcattgtcctcagattcttgtggcaattgtcagcatcatcttcatagtcacactagcaagttacaatggttttgtcggaatttggatagctttgacagtctacatgagcctccgaatgcttgcaggattcttaaggtacaatcagtcaaagcattatcttttctaacctgagtatttgattacaaacctttattacaatgacaaacaatagttataagtcttcagtaatgattgctacaaccagaatcaccaccaaacagttcacaggacaccactacaccagctttctcccagtctgcacaggcacacaccctaaaagctaacattccatagggaacatcacaatctggcaattcatggtcaggaataaattcacattgacaggatcaacaccaccctgtgataaggaacatcaataagacgtgcagccactagtctcgtgccctcgccatgcccttcccccatggctaaaacagaaaccactttgctctagcatctatcaactcgaatgagaatagatgctatcatgatgaggaccaatacgagtaacagcaagcatcataccccagctttagagctcaacaccaaggaagaaaagttgctgattataagaagtgatttgtgtcaacgtgcacttggcaaataaaagaggtagctagaatgtagtaatgtatccccgtgaggccgtgacagacgaagcaagaaaaataccaaaactttgtgctatatgcctacaaatgtagtttcatctcaaatacgaaaataaaaacttaaattcgttttatacctactgcagtgtcattcgttttctatattgattttacaagtttgcaataaatcgctatactaaattttcaggatagggactgcacgaggaccatggactttctatgcagctcaacgcatgcattctcatgaggtggttggactttgttgaacaatactataggaagacaccatggatactttgtaaggttttgcaggtttggtgggaatggaggttgtttgaacaaaagaaaatattcaactgtcatgtacatagataatcacacatgttactactattctaatagattctcccctgtcgtgtatgttgtatttgcccatgtatagttcagtatgttcggctggctattttgtaacaagtttggatataaagtcacgtagcataagatgtttgcacaccgtgagatatacggagcattggcatttgatttttaaaacattaatggaaattttaccagatgcc</dnaseqindica>|
| + | |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001070849.1 RefSeq:Os10g0206800]|
| + | ==References== |
| − | }}
| + | <references> |
| − | [[Category:Genes]] | + | <ref name="ref1"> |
| − | [[Category:Japonica mRNA]]
| + | Yokosho K, Yamaji N, Fujii-Kashino M, Ma JF. Functional Analysis of a MATE |
| − | [[Category:Oryza Sativa Japonica Group]] | + | Gene OsFRDL2 Revealed its Involvement in Al-Induced Secretion of Citrate, but a |
| − | [[Category:Japonica Genes]]
| + | Lower Contribution to Al Tolerance in Rice. Plant Cell Physiol. 2016 |
| − | [[Category:Japonica Chromosome 10]] | + | May;57(5):976-85. doi: 10.1093/pcp/pcw026. Epub 2016 Feb 12. PubMed PMID: |
| − | [[Category:Chromosome 10]]
| + | 26872836. |
| | + | |
| | + | </ref> |
| | + | </references> |
| | + | |
| | + | ==Structured Information== |
| | + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 10]] |
