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| − | {{JaponicaGene|
| + | The rice '''''Os04g0429100''''' was reported as '''''SDG708''''' in 2015 <ref name="ref1" /> by researchers from China and France. |
| − | GeneName = Os04g0429100|
| |
| − | Description = Similar to SET domain-containing protein SET102|
| |
| − | Version = NM_001059342.1 GI:115458413 GeneID:4335856|
| |
| − | Length = 4764 bp|
| |
| − | Definition = Oryza sativa Japonica Group Os04g0429100, complete gene.|
| |
| − | Source = Oryza sativa Japonica Group
| |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| + | ==Annotated Information== |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | ===Gene Symbol=== |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| + | *'''''Os04g0429100''''' '''''<=>''''' '''''SDG708''''' |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| + | |
| − | |
| + | ===Function=== |
| − | Chromosome = [[:category:Japonica Chromosome 4|Chromosome 4]]|
| + | '''''SDG708''''' is a methyltransferase that catalyses genome-wide deposition of all three methyl groups on H3K36 and is involved in many biological processes in addition to flowering promotion. |
| − | AP = Chromosome 4:21280280..21285043|
| + | |
| − | CDS = 21280280..21280564,21280650..21280723,21280815..21280971,21281430..21281516,21281615..21281699<br>,21282686..21282779,21282917..21283115,21283391..21283425,21283952..21284507<br>,21284598..21284864|
| + | ===Phenotypic analysis=== |
| − | GCID = <gbrowseImage1>
| + | *Compared with the wild-type, '''''SDG708'''''-knockdown rice mutants displayed a late-flowering phenotype under both long-day and short-day conditions because of the down-regulation of the key flowering regulatory genes Heading date 3a (Hd3a), RICE FLOWERING LOCUS T1(RFT1), and Early heading date 1 (Ehd1). |
| − | name=NC_008397:21280280..21285043
| + | *Chromatin immunoprecipitation experiments indicated that H3K36me1, H3K36me2, and H3K36me3 levels were reduced at these loci in '''''SDG708'''''-deficient plants. |
| − | source=RiceChromosome04
| + | *Knockdown of '''''SDG708''''' led to misexpression of a set of functional genes and a genome-wide decrease in H3K36me1/2/3 levels during the early growth stages of rice. |
| − | preset=GeneLocation
| + | |
| − | </gbrowseImage1>|
| + | |
| − | GSID = <gbrowseImage2>
| + | |
| − | name=NC_008397:21280280..21285043
| + | You can also add sub-section(s) at will. |
| − | source=RiceChromosome04
| + | |
| − | preset=GeneLocation
| + | ==Labs working on this gene== |
| − | </gbrowseImage2>| | + | *State Key Laboratory of Genetic Engineering, Collaborative Innovation Center of Genetics and Development, International Associated Laboratory of CNRS-Fudan-HUNAU on Plant Epigenome Research, Institute of Plant Biology, School of Life Sciences, Fudan University, Shanghai 200433,China *State Key Laboratory of Genetics Engineering, MOE Key Laboratory of Contemporary Anthropology, Collaborative Innovation Center of Genetics and Development, School of Life Sciences, Fudan University, Shanghai 200433, China |
| − | CDNA = <cdnaseq>agccgaatccgtctttcctctcctcctcctcctcctcctccgaccaccggccagccggcgaagtcctccgccgcggagctcacctcctccggcgccggcgacgcccccctcggtagccccggggaggacgcctttcctccggcgaccacttccccagtcgccgcctccgccgctcctcgaaccactcacgcgccgcgcgggctcctgtcccaggctatcagccgcgatttccctacccctctcgccggatacctcgccgccgtccaagagctagcgtctctgatggaggaagagcgcatggagccgccgccgccgccgccgtacatccacatcgagaccaacgatttcttgcacaggaggcacaagaggcagaaagaggaggacatagctgtgtgtgagtgccagtataatctgctggatccggacagcgcgtgcggggatcggtgcttgaacgtcttgactagcacggagtgtacgcctggatactgcctctgcggtgtatactgcaagaaccagcgatttcaaaaaagccaatatgctgcgacaaggctggtaaaaactgaagggcgtggatggggccttttggctgatgagaatattatggctggacaatttgttatggaatattgtggagaagtaatatcatggaaggaagccaagaggagatctcaagcatatgaaaaccagggtttaacggatgcctatattatctatctgaatgctgatgagtctatcgacgcaacaaagaaggggagcctggcaagattcatcaaccattcgtgccaaccaaactgtgagacaaggaaatggaatgttcttggggaagtaagagtgggaatttttgcgaaacaagatattccaatcggaacggaactatcctatgactacaactttgagtggtttggtggtgcaatggtgaggtgcctttgtggagctggcagctgttctggatttcttggggctaaatcacgtggtttccaggaggctacatacctgtgggaagatgatgatgacaggttttctgttgagaatgttcccctttatgattctgctgatgatgaacctaccagcattccaaaggacatcttaataaaagatgagccaaatacacaggatggcaacaacaacacaatccaaaatactgggattcctattattgcaagttcaagtgaattcacaccgatgaatgttgaaccatcgattgcgagttcaaatgagttcacaccgatgaatgttgaaccattgaatgtgagctcaaatgaattgacaccaatgactattgaaccattgaatgctattccaatgggagttgattttactcagaatggatcaattgaatatggtgcgcaatgtgctgaagatgctctgcaaaactcaacgcgtggagttgcaaacctccagaatcaaagtgcgccccgggacaacaaccatacagagttggttgcggtgaaacgtagacccacacttcgtggtggaaaagctaaacgtggtatgcgcaagcaactgaatgttgtgggtatctgtgatcggttagcatcagaggtggcacgtgaagaaatattgtattgcgaggaaatgaagaatgaagctgctgctgaaattgacagcctgtacgacgagataaggccggcgatcgaagagcatgagagggatagtcaagacagcgtggccacaagccttgcagagaagtggattgaggctagctgctgcaagtacaaagctgattttgatctgtatgcttccattatcaagaatcttgcttccacacctctaagatcaaaagaagacgcggcccctacagagcaaaatggattgatgtacttggaaaacggtccatga</cdnaseq>|
| + | *CNRS, Institut de Biologie Moleculaire des Plantes, Universite de Strasbourg, Strasbourg, France |
| − | AA = <aaseq>SRIRLSSPPPPPPPTTGQPAKSSAAELTSSGAGDAPLGSPGEDA FPPATTSPVAASAAPRTTHAPRGLLSQAISRDFPTPLAGYLAAVQELASLMEEERMEP PPPPPYIHIETNDFLHRRHKRQKEEDIAVCECQYNLLDPDSACGDRCLNVLTSTECTP GYCLCGVYCKNQRFQKSQYAATRLVKTEGRGWGLLADENIMAGQFVMEYCGEVISWKE AKRRSQAYENQGLTDAYIIYLNADESIDATKKGSLARFINHSCQPNCETRKWNVLGEV RVGIFAKQDIPIGTELSYDYNFEWFGGAMVRCLCGAGSCSGFLGAKSRGFQEATYLWE DDDDRFSVENVPLYDSADDEPTSIPKDILIKDEPNTQDGNNNTIQNTGIPIIASSSEF TPMNVEPSIASSNEFTPMNVEPLNVSSNELTPMTIEPLNAIPMGVDFTQNGSIEYGAQ CAEDALQNSTRGVANLQNQSAPRDNNHTELVAVKRRPTLRGGKAKRGMRKQLNVVGIC DRLASEVAREEILYCEEMKNEAAAEIDSLYDEIRPAIEEHERDSQDSVATSLAEKWIE ASCCKYKADFDLYASIIKNLASTPLRSKEDAAPTEQNGLMYLENGP</aaseq>|
| + | |
| − | DNA = <dnaseqindica>1..285#371..444#536..692#1151..1237#1336..1420#2407..2500#2638..2836#3112..3146#3673..4228#4319..4585#agccgaatccgtctttcctctcctcctcctcctcctcctccgaccaccggccagccggcgaagtcctccgccgcggagctcacctcctccggcgccggcgacgcccccctcggtagccccggggaggacgcctttcctccggcgaccacttccccagtcgccgcctccgccgctcctcgaaccactcacgcgccgcgcgggctcctgtcccaggctatcagccgcgatttccctacccctctcgccggatacctcgccgccgtccaagagctagcgtctctgatggtaacttctctgtgagctcgctcgctcgctcgtagagattcctgattctgtatgattgagctccccgggctgttcggttttgcaggaggaagagcgcatggagccgccgccgccgccgccgtacatccacatcgagaccaacgatttcttgcacaggaggtgagtgagtttcacggcgatgtgggacaacggctgcgtcctgtgcttttggatgtaatgcgaatctttatactttggtgcgcgatgctaggcacaagaggcagaaagaggaggacatagctgtgtgtgagtgccagtataatctgctggatccggacagcgcgtgcggggatcggtgcttgaacgtcttgactagcacggagtgtacgcctggatactgcctctgcggtgtatactgcaagaaccaggttggtgtttctcttgttcaagtagtagcgcaaccgttccaaatcttgattgaatgaatatccatacatttgttcttacatgattactttagttcactcgagcctagttactaggcaggaggggaaaaaaatggtgtaacacggttattttgctttcttgtcttcttgattgaatataatccagtttattatagatgtacagcaattttcaatatagtcgtgctggctcttagctgtaaggattttttttcaagtgagattgaatataatctggtttcttatacatgatgtaccattatttctaatatatagttttactaattttctatagataccgaacactatcattttcaatatatagttttaccaatttgctagggaggccgaatgtcatctggagtgctttacagtttcactggtagttatgtttgtattttaatcaatttctctgttggcagcgatttcaaaaaagccaatatgctgcgacaaggctggtaaaaactgaagggcgtggatggggccttttggctgatgagaatattatggtgactgaatttaccttgattttatggtctgctaatgttgttaaatatattcaagtgagtatgctttagtgagtcattgttttcttaatggtttttaggctggacaatttgttatggaatattgtggagaagtaatatcatggaaggaagccaagaggagatctcaagcatatgaaaaccagggtctgttgattttatcttccctcaatgttagcatggtggtacattttggctagggatggcaaccgggccatccccggcggggtgtggtcccccgtccccgtccccgtccccgtgcagttagaaatcacccgcccccgtccccggtgtcggggctgtatttctcccgtccccaagcctcgccgggtgcacggggcacccacggggtcgcacacccgataaactcgtgggcataaatcaacaagaaggttctctagtaggaaggtagaagtagaacagatcggcaaaaatagcacgaggacatacatctatcattttctcagattatgaacatgaccatggtgccagacttgcatgattctgttgccaagaatcagctccaacttccatcaaaatgagaaaaataaacagcgacaaacaggacagagcagaaaataacaagcaaagtatataccggcattcggatgcagcaagtgcccgtcctcttgctttcccgcatgagcaagcgacttggaggcagaacaacagctcgcgcggcatggtcaccttatgcggcggcggggtgctatatcgctgctgtggcctggaggaggtgcgatggctggcgcccttgccgacctcgactggcggctgctgatggatctgagaaggggacaagggaggactggtctagtgtagggtttcttttgctttatataccagcacctctaaattgggcactaagtgggcttttaacttttatggactgtacatatgcctacactactcgagtcacccacggggattcggggccgggtgcctatggaacatccccgtccccgcatcacccaacggtgacagtttctagccgataacagccccatgggtgatgaatttagcctgtttacataccctaatagagtttttacctatcgggtatcggggttcgggtccccattgccatccctaattttggctagctataacatttgttttttgtgccctgttaggtttaacggatgcctatattatctatctgaatgctgatgagtctatcgacgcaacaaagaaggggagcctggcaagattcatcaaccattcgtggtatgtcttgtagcaaatatatgtctgcctatattatgtttctttcatatgcattatttgataattgattatcgagtttttttccatttactagcatttaatgattaaatctgatagcttgttattgaagcatgcagccaaccaaactgtgagacaaggaaatggaatgttcttggggaagtaagagtgggaatttttgcgaaacaagatattccaatcggaacggaactatcctatgactacaactttgagtggtttggtggtgcaatggtgaggtgcctttgtggagctggcagctgttctggatttcttggggctaaatcacgtggtttccaggtaaaaagttgttgtgtgatatgtcttgtaacctgaaaagcaccattttataagtaggattttcccttgcacatgtgctggcataattcttctgcatttctctcttaccatgagtgctgaagtacaggttacatgcacagtcgcttcataaattgttaatttatataggagtagttacaaattggttacattttcagtgtttattttcatttttacattccttttagaatgcccatcgcttatgtaatgaatgctacatttttgccatgttttaggaggctacatacctgtgggaagatgatgatgacaggtaggattgtgcttgtacttacctatccaatctgctgaataaaatattgtctattcaaatggtcccaggaagttatatgtggtaacttctgtaattggatggttttacttagcagtgacctttctctgttattccctcagtcccaaaatataataacttaggatcagatggggacgtttcctagtactacaaatctggacaggaaacgtcccatccgatcctaggttgttatattttaggacggagggagcagttaagacaaataggaaaaaagaagcaattaaacagcatgttaacataactactattatgtcttgctttattatcttctcagatccatattactgtcatgtcttgcattatcatcatagaagaagatcctagttggttaaaaatatgcagatttgtgttgcctgggtcaacctgtcatttcaaacaaagcctgaatttcttgaaatgccgaaatatcgacggatacaacaaatctgagcaccggttaacatatgctttccatcttaaattgcaggttttctgttgagaatgttcccctttatgattctgctgatgatgaacctaccagcattccaaaggacatcttaataaaagatgagccaaatacacaggatggcaacaacaacacaatccaaaatactgggattcctattattgcaagttcaagtgaattcacaccgatgaatgttgaaccatcgattgcgagttcaaatgagttcacaccgatgaatgttgaaccattgaatgtgagctcaaatgaattgacaccaatgactattgaaccattgaatgctattccaatgggagttgattttactcagaatggatcaattgaatatggtgcgcaatgtgctgaagatgctctgcaaaactcaacgcgtggagttgcaaacctccagaatcaaagtgcgccccgggacaacaaccatacagagttggttgcggtgaaacgtagacccacacttcgtggtggaaaagctaaacgtggtatgcgcaagcaactgaatgttgtgggtatctgtgatcggttagcatcagaggtggcacgtgaagaaatattgtattgcgaggtaaagaactactgtaactccctttttattgaacattgctctaggaaagcttaggctttgcaatgaccttttttccaaatcaaatgtcaggaaatgaagaatgaagctgctgctgaaattgacagcctgtacgacgagataaggccggcgatcgaagagcatgagagggatagtcaagacagcgtggccacaagccttgcagagaagtggattgaggctagctgctgcaagtacaaagctgattttgatctgtatgcttccattatcaagaatcttgcttccacacctctaagatcaaaagaagacgcggcccctacagagcaaaatggattgatgtacttggaaaacggtccatgaaccgatttacaaattggacttgtaaaagctagaaaaaggctagagattgattgtcagacatagttgaggtttaggggattatcttccctgatacaatttggttaagaaaattatgcaaggtcatatttttcttattgcaaataccattaacgtgagtatgtttactcatggaaaccctg</dnaseqindica>|
| + | ==References== |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001059342.1 RefSeq:Os04g0429100]|
| + | <references> |
| − | }}
| + | * <ref name="ref1"> |
| − | [[Category:Genes]] | + | Liu B, Wei G, Shi J, Jin J, Shen T, Ni T, Shen WH, Yu Y, Dong A. SET DOMAIN GROUP 708, a histone H3 lysine 36-specific methyltransferase, controls flowering time in rice (Oryza sativa). New Phytol. 2016 Apr;210(2):577-88. doi:10.1111/nph.13768. Epub 2015 Dec 7. PubMed PMID: 26639303. |
| − | [[Category:Japonica mRNA]]
| + | |
| − | [[Category:Oryza Sativa Japonica Group]] | + | </ref> |
| − | [[Category:Japonica Genes]]
| + | </references> |
| − | [[Category:Japonica Chromosome 4]] | + | |
| − | [[Category:Chromosome 4]]
| + | ==Structured Information== |
| | + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 4]] |
