Difference between revisions of "Os02g0673700"

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(Created page with "{{JaponicaGene| GeneName = Os02g0673700| Description = Zinc finger, Dof-type family protein| Version = NM_001054251.1 GI:115447872 GeneID:4330293| Length = 2299 bp| Defin...")
 
(Phenotypic analysis)
 
(7 intermediate revisions by 3 users not shown)
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{{JaponicaGene|
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The rice '''''Os02g0673700''''' was reported as '''''RDD1''''' in 2016 <ref name="ref1" /> by researchers from Japan.  
GeneName = Os02g0673700|
 
Description = Zinc finger, Dof-type family protein|
 
Version = NM_001054251.1 GI:115447872 GeneID:4330293|
 
Length = 2299 bp|
 
Definition = Oryza sativa Japonica Group Os02g0673700, complete gene.|
 
Source = Oryza sativa Japonica Group
 
  
  ORGANISM  Oryza sativa Japonica Group
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==Annotated Information==
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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===Gene Symbol===
            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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*'''''Os02g0673700''''' '''''<=>''''' '''''RDD1'''''
            clade; Ehrhartoideae; Oryzeae; Oryza.
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===Function===
|
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*Transcription factor encoding gene '''''RDD1''''' plays a role in improving the uptake and accu-mulation of various nutrient ions in rice.
Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|
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*'''''RDD1''''' can contribute to the increased grain productivity of rice via inducing theefficient uptake and accumulation of various nutrient ions.
AP = Chromosome 2:28322917..28325215|
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CDS = 28323082..28324203,28324886..28324891|
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===Phenotypic analysis===
GCID = <gbrowseImage1>
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*The overexpression of '''''RDD1''''' induced the expression of genes associated with the transport of several nutrients such as NH4+,Na+,SO4<sup>2-</sup>,Cl-,PO4<sup>3-</sup> and sucrose, and the uptake and accumulation of various nutrient ions under low-nutrientconditions.
name=NC_008395:28322917..28325215
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*The overexpression of '''''RDD1''''' increased nitrogen responsiveness and grain productiv-ity.
source=RiceChromosome02
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preset=GeneLocation
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===Expression===
</gbrowseImage1>|
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*An '''''RDD1''''' transgene driven by a strong constitutive promoter exhibited a diurnally oscillating expression similar tothat of the endogenous RDD1, and nucleotide substitution within the miR166 recognition site to preventmiR166–RDD1 mRNA pairing resulted in constitutive '''''RDD1''''' expression.  
GSID = <gbrowseImage2>
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name=NC_008395:28322917..28325215
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source=RiceChromosome02
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preset=GeneLocation
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You can also add sub-section(s) at will.
</gbrowseImage2>|
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CDNA = <cdnaseq>atgtgggggctagggctagtgaagcccatggaagagatgctgatgggtgcaaatccaaatcctaatgggagctcaaatcagccaccgccaccgccgtcctcggcggccagcgcccagcggcctatcgccccaccggcggctggagcggccgccggcgcgggcgccgccggagctggggctggcacggagcgccgcgcgcggccgcagaaggagaaggcgctcaactgcccgcggtgcaactcgacgaacaccaagttctgctactacaacaactacagcctccagcagccgcgctacttctgcaagacgtgccgccgctactggacggagggcggctcgctccgcaacgtccccgtcggcggcggctcacggaagaacaagcgctcgtcgtcctcggtggtgccgtcggcggccgcgtcggcctccacctccgcggcggtgtccggctcggtccccgtggggctggcggccaagaacccgaagctgatgcacgagggagcgcaggacctcaacctagcgttcccgcaccaccacggccgcgccctgcagccgccggagttcacggcgttcccgagcttggagagcagcagcgtgtgcaaccccggaggcaacctggcggcggcgaacggcgccggtggcaggggcagcgtgggcgcgttctcggcgatggagttgctgaggagcaccggctgctacgttccgctgccgcagatggcgccgctagggatgccggcggagtacgcagctgcggggttccatctcggcgagttccgcatgccaccgccgccacagcagcagcagcagcaacaagctcagaccgtgctcggtttctccctggacacgcacggcgcgggtgcaggcggcggctccggggtgttcggcgcgtgcagcgctgggttgcaagagagcgcggcgggcaggttgctgttccccttcgaggacctgaagccggtggtgagcgccgcggctggcgacgcgaacagcggcggcgatcatcagtacgaccacggcaagaaccaaggtggtggcggcggcgtcatcggtggccatgaggccccagggttctggaatagcagcatgatcggcaacggcagcagcaatggcggcggcggcggcggttcttggtaa</cdnaseq>|
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==Labs working on this gene==
AA = <aaseq>MWGLGLVKPMEEMLMGANPNPNGSSNQPPPPPSSAASAQRPIAP                    PAAGAAAGAGAAGAGAGTERRARPQKEKALNCPRCNSTNTKFCYYNNYSLQQPRYFCK                    TCRRYWTEGGSLRNVPVGGGSRKNKRSSSSVVPSAAASASTSAAVSGSVPVGLAAKNP                    KLMHEGAQDLNLAFPHHHGRALQPPEFTAFPSLESSSVCNPGGNLAAANGAGGRGSVG                    AFSAMELLRSTGCYVPLPQMAPLGMPAEYAAAGFHLGEFRMPPPPQQQQQQQAQTVLG                    FSLDTHGAGAGGGSGVFGACSAGLQESAAGRLLFPFEDLKPVVSAAAGDANSGGDHQY                    DHGKNQGGGGGVIGGHEAPGFWNSSMIGNGSSNGGGGGGSW</aaseq>|
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*Division of Plant Sciences, National Institute of Agrobiological Sciences, Tsukuba Ibaraki 305-8602, Japan
DNA = <dnaseqindica>1013..2134#325..330#ctgatctgcgctcgatcctttctcgaatcggtgcatgcaacaccggcgacatgtctacaattaagatctctcaccgggggcccggccgggtcgattttggcttctgctcttcttctggatcttgttgatgtgggtgtttcttggtcgatccttcttgtttaatctgcctgtgccttgatcttggcgcttgcttttcctctggtgggatacggtgatctctattctctctcggctttgtttgctcttgggaaccgccatggccaaccttttattctttgtgcagatctatgcacggatcggccatattcttctcgctctgtgtgtatgtgggttagtttctgtcttctccattggcttcgagctgagggctcttgttgttgttgtttggggccttttaattctcttgctccctcctctccttccccttttaatccttgaaaggagcacacgacgcaccgcttttcttttcctttgttcctcgctttctttcttatcctccctttcctttttatcttttcatctctcttttcctcatggcttttctctccacccctcaccctttcgtctctctcctcaagcccacaccttgcatcaaaagagtagccatgtcttggaggatgatgtagtagcagcagcagcagtactgctacgccacaaacacaaccctacaagagcacaaacaaagttgtgtgttttgtgtggtggtgtgttttctctctcatctttactttgctttttttttcccgctttatttctatctttcacctttccctcttctagctttaatctcgctttgtatccatttgcttggttctttgttgcaccataaggatcctagctcacatcacacctcatgctcattcatcttcccccattcgtctctcatatactacatgttcttgcttcttggttcttgctaattgtctagtattgcataacttagttctaggtttgtgttgatacttgcaattgcaacatctaatggagtgcaacgacatgtgtcaatcaccaggggctagggctagtgaagcccatggaagagatgctgatgggtgcaaatccaaatcctaatgggagctcaaatcagccaccgccaccgccgtcctcggcggccagcgcccagcggcctatcgccccaccggcggctggagcggccgccggcgcgggcgccgccggagctggggctggcacggagcgccgcgcgcggccgcagaaggagaaggcgctcaactgcccgcggtgcaactcgacgaacaccaagttctgctactacaacaactacagcctccagcagccgcgctacttctgcaagacgtgccgccgctactggacggagggcggctcgctccgcaacgtccccgtcggcggcggctcacggaagaacaagcgctcgtcgtcctcggtggtgccgtcggcggccgcgtcggcctccacctccgcggcggtgtccggctcggtccccgtggggctggcggccaagaacccgaagctgatgcacgagggagcgcaggacctcaacctagcgttcccgcaccaccacggccgcgccctgcagccgccggagttcacggcgttcccgagcttggagagcagcagcgtgtgcaaccccggaggcaacctggcggcggcgaacggcgccggtggcaggggcagcgtgggcgcgttctcggcgatggagttgctgaggagcaccggctgctacgttccgctgccgcagatggcgccgctagggatgccggcggagtacgcagctgcggggttccatctcggcgagttccgcatgccaccgccgccacagcagcagcagcagcaacaagctcagaccgtgctcggtttctccctggacacgcacggcgcgggtgcaggcggcggctccggggtgttcggcgcgtgcagcgctgggttgcaagagagcgcggcgggcaggttgctgttccccttcgaggacctgaagccggtggtgagcgccgcggctggcgacgcgaacagcggcggcgatcatcagtacgaccacggcaagaaccaaggtggtggcggcggcgtcatcggtggccatgaggccccagggttctggaatagcagcatgatcggcaacggcagcagcaatggcggcggcggcggcggttcttggtaaggtggtgcgagctgctactgcttgcccgccgccgccatgcatggctcatgcatgcacgcgtggtggtcagcagctagcagcatgtggagatagagaaacgagatagagacaaggggggttaataagcctgtggtgattagtgttacatatggcgttttgtttctc</dnaseqindica>|
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*JST, PRESTO, Kawaguchi Saitama 332-0012, Japan
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001054251.1 RefSeq:Os02g0673700]|
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}}
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==References==
[[Category:Genes]]
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<references>
[[Category:Japonica mRNA]]
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* <ref name="ref1">
[[Category:Oryza Sativa Japonica Group]]
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Iwamoto M, Tagiri A. MicroRNA-targeted transcription factor gene RDD1 promotes nutrient ion uptake and accumulation in rice. Plant J. 2016 Feb;85(4):466-77. doi: 10.1111/tpj.13117. Epub 2016 Feb 3. PubMed PMID: 26729506.
[[Category:Japonica Genes]]
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</ref>
[[Category:Japonica Chromosome 2]]
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</references>
[[Category:Chromosome 2]]
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 +
==Structured Information==
 +
    [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 2]]

Latest revision as of 02:45, 26 May 2017

The rice Os02g0673700 was reported as RDD1 in 2016 [1] by researchers from Japan.

Annotated Information

Gene Symbol

  • Os02g0673700 <=> RDD1

Function

  • Transcription factor encoding gene RDD1 plays a role in improving the uptake and accu-mulation of various nutrient ions in rice.
  • RDD1 can contribute to the increased grain productivity of rice via inducing theefficient uptake and accumulation of various nutrient ions.

Phenotypic analysis

  • The overexpression of RDD1 induced the expression of genes associated with the transport of several nutrients such as NH4+,Na+,SO42-,Cl-,PO43- and sucrose, and the uptake and accumulation of various nutrient ions under low-nutrientconditions.
  • The overexpression of RDD1 increased nitrogen responsiveness and grain productiv-ity.

Expression

  • An RDD1 transgene driven by a strong constitutive promoter exhibited a diurnally oscillating expression similar tothat of the endogenous RDD1, and nucleotide substitution within the miR166 recognition site to preventmiR166–RDD1 mRNA pairing resulted in constitutive RDD1 expression.


You can also add sub-section(s) at will.

Labs working on this gene

  • Division of Plant Sciences, National Institute of Agrobiological Sciences, Tsukuba Ibaraki 305-8602, Japan
  • JST, PRESTO, Kawaguchi Saitama 332-0012, Japan

References

  1. Iwamoto M, Tagiri A. MicroRNA-targeted transcription factor gene RDD1 promotes nutrient ion uptake and accumulation in rice. Plant J. 2016 Feb;85(4):466-77. doi: 10.1111/tpj.13117. Epub 2016 Feb 3. PubMed PMID: 26729506.

Structured Information