Difference between revisions of "Os05g0488800"

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Please input one-sentence summary here.
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The rice '''''Os05g0488800''''' was reported as '''''SIRP1''''' in 2016 <ref name="ref1" /> by researchers from Korea.  
  
 
==Annotated Information==
 
==Annotated Information==
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===Gene Symbol===
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*'''''Os05g0488800''''' '''''<=>''''' '''''SIRP1''''' '''''SIRP1'''''
 
===Function===
 
===Function===
Please input function information here.
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*'''''OsSIRP1''''' acts as a negative regulator of salinity stress tolerance mediated by the ubiquitin 26S proteasome system.
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===Phenotypic analysis===
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*Poly-ubiquitinated products of '''''OsSIRP1''''' were investigated via an in vitro ubiquitination assay.35S:OsSIRP1-EYFP was distributed in the cytosol of untreated and salt-treated rice protoplasts.
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*Heterogeneous overexpression of '''''OsSIRP1''''' in Arabidopsis reduced tolerance for salinity stress during seed germination and root growth.
  
 
===Expression===
 
===Expression===
Please input expression information here.
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*Transcript levels of '''''OsSIRP1''''' in rice leaves after various stress treatments, including salt, heat, drought and hormone abscisic acid (ABA), were observed.
 
 
===Evolution===
 
Please input evolution information here.
 
  
 
You can also add sub-section(s) at will.
 
You can also add sub-section(s) at will.
  
 
==Labs working on this gene==
 
==Labs working on this gene==
Please input related labs here.
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*Plant Genomics Laboratory, Department of Applied Plant Sciences, Kangwon National University, Chuncheon 200-713, Korea
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*Agriculture and Life Sciences Research Institute, Kangwon National University, Chuncheon 200-713, Korea
  
 
==References==
 
==References==
Please input cited references here.
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<references>
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* <ref name="ref1">
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Hwang SG, Kim JJ, Lim SD, Park YC, Moon JC, Jang CS. Molecular dissection of Oryza sativa salt-induced RING Finger Protein 1 (OsSIRP1): possible involvement in the sensitivity response to salinity stress. Physiol Plant. 2016 Oct;158(2):168-79. doi: 10.1111/ppl.12459. Epub 2016 Jun 6. PubMed PMID:27118216.
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</ref>
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</references>
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==Structured Information==
 
==Structured Information==
{{JaponicaGene|
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    [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 5]]
GeneName = Os05g0488800|
 
Description = The start codon is not identified.|
 
Version = NM_001062422.2 GI:297604678 GeneID:4339152|
 
Length = 2472 bp|
 
Definition = Oryza sativa Japonica Group Os05g0488800, complete gene.|
 
Source = Oryza sativa Japonica Group
 
 
 
  ORGANISM  Oryza sativa Japonica Group
 
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
 
            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
 
            clade; Ehrhartoideae; Oryzeae; Oryza.
 
|
 
Chromosome = [[:category:Japonica Chromosome 5|Chromosome 5]]|
 
AP = Chromosome 5:24070838..24073309|
 
CDS = 24071414..24072325,24072357..24072416|
 
GCID = <gbrowseImage1>
 
name=NC_008398:24070838..24073309
 
source=RiceChromosome05
 
preset=GeneLocation
 
</gbrowseImage1>|
 
GSID = <gbrowseImage2>
 
name=NC_008398:24070838..24073309
 
source=RiceChromosome05
 
preset=GeneLocation
 
</gbrowseImage2>|
 
CDNA = <cdnaseq>tcgtggtgccgtcaaccgaaggatttgcaagatggcagaagctgcaatcacaaggtactggccatggtggatgagatcaagtgcccatcctgtggtggcgggttcgttgaagagatgaccgatgaggagattgagagactgaccaacaggcagccagagccgggtttctcgcaatggaaccctattgagcatccaggagaaacgatggacagcgacgatgaagataatgatttaggtcgtgagtttgagggttttatcaggaggcatcgacgggcatcaactctacgacgcgtgcttgacagcatccatgatgaccttgcagatgaccaagaaagggacagttccattctgatcaacgccttcaaccaagccctcgctctgcaaggctcagtgcttgatcctgatgagggccaaggtgaccaaggcggttcaacaaatgatgatggcttactggaggagtatgtcctcggagcaggtctgagcctgctgcttcaacatttggctgagagcgacccaagtcggaatggtacccctcctgcaaagaaagaggcggttgaagcgctgcccactgtgaaaatcgaagaggttgtcagctgttcagtctgccttgatgatcttgaggtggggtcccaggctaaacaaatgccatgtgaacataagtttcattcttcttgtatcctgccatggcttgaattacatagttcctgcccggtttgccggtttgagctgccttctgaggagacaaaagacttgaacgagcctagcaacattggtagagtggaggacagccatgaggaagtcagagctgatggccctggaaacgtcagcgagagcagtaacagaccctgggctattgttccttggttgaatgagctattctcaactcgtgaggcacagaatgctggaggtgtttctacggatcaacaatcaccgcacacttctggaaccaacccaaatgcagggcacagttga</cdnaseq>|
 
AA = <aaseq>SWCRQPKDLQDGRSCNHKVLAMVDEIKCPSCGGGFVEEMTDEEI                    ERLTNRQPEPGFSQWNPIEHPGETMDSDDEDNDLGREFEGFIRRHRRASTLRRVLDSI                    HDDLADDQERDSSILINAFNQALALQGSVLDPDEGQGDQGGSTNDDGLLEEYVLGAGL                    SLLLQHLAESDPSRNGTPPAKKEAVEALPTVKIEEVVSCSVCLDDLEVGSQAKQMPCE                    HKFHSSCILPWLELHSSCPVCRFELPSEETKDLNEPSNIGRVEDSHEEVRADGPGNVS                    ESSNRPWAIVPWLNELFSTREAQNAGGVSTDQQSPHTSGTNPNAGHS</aaseq>|
 
DNA = <dnaseqindica>985..1896#894..953#agctttgcagccacctgccctctgaacttcttgttcttcgtctcacacttcgcccgaagcaaacgagaacaagacgaccgcctctatccaatccaatatcccagtccaatcgaaaggttagtcacttcttgatttgaattttccttctgcttagtttgatacaaaaggggattctttttattttcgttccagtgttcgaaatcatggagacgatttctatctttccccctttgatcgcttgtatgttaatctagagatttttctctttaaaaaaagaggaaattttggtgggggaagatgagtcctgcgacgaaattatacggggtgcaatggcgtgaatcttgagcagtgccggaatccggtttcttgttcttctaacccccaaaccaaagacttctgctgcgtttttattcctctttcgggggggatagcatcgtgttctctgaaagaattggaatcgagcacctgattcttggagagggaatcttggctcttgatctctgccttccccttcgcaaagatctatctgtcagtgctgtgcctcatcccccccaagtgggtcttttctctgggacagcttgctgcccctgttgatgaagaacccaaaaaaggctaatttatttcgtgtgttggatgcaaagctaacccttgttctttgttcttgatgctgatctgttgtgagatctgtatgccagcaattgtctttgtgaaatccagtcacggatggatgccgtagtgttcatcttgtttcagttcttcttgattaaacttctggcaagatgctggactctctcgtgtagatgataaaaaatgtgtatgtcgtggttgtttgcttgggaatcttacggattattaacttattatggtgcccggttcacagatttgcgttttgatcgtggtgccgtcaaccgaaggatttgcaagatggcagaagctgcaatcacaaggtactggtgccatgaatgcgagcaggccattgaggaggccatggtggatgagatcaagtgcccatcctgtggtggcgggttcgttgaagagatgaccgatgaggagattgagagactgaccaacaggcagccagagccgggtttctcgcaatggaaccctattgagcatccaggagaaacgatggacagcgacgatgaagataatgatttaggtcgtgagtttgagggttttatcaggaggcatcgacgggcatcaactctacgacgcgtgcttgacagcatccatgatgaccttgcagatgaccaagaaagggacagttccattctgatcaacgccttcaaccaagccctcgctctgcaaggctcagtgcttgatcctgatgagggccaaggtgaccaaggcggttcaacaaatgatgatggcttactggaggagtatgtcctcggagcaggtctgagcctgctgcttcaacatttggctgagagcgacccaagtcggaatggtacccctcctgcaaagaaagaggcggttgaagcgctgcccactgtgaaaatcgaagaggttgtcagctgttcagtctgccttgatgatcttgaggtggggtcccaggctaaacaaatgccatgtgaacataagtttcattcttcttgtatcctgccatggcttgaattacatagttcctgcccggtttgccggtttgagctgccttctgaggagacaaaagacttgaacgagcctagcaacattggtagagtggaggacagccatgaggaagtcagagctgatggccctggaaacgtcagcgagagcagtaacagaccctgggctattgttccttggttgaatgagctattctcaactcgtgaggcacagaatgctggaggtgtttctacggatcaacaatcaccgcacacttctggaaccaacccaaatgcagggcacagttgatttctgctgctgttgcgatttgtgaataatgatagtacaagtgacccagattggtagaactgttgttttccatacctatcatctcccttggatggatcacagcatagaaagcttgccaggcattgtcatatcatctgtgctcatttgctttgcttcagcttactgcagctaaagtcggttctgcatgttgggacattgatttcgtcttggctctgagaatggcacaccactcatgtgtcatgattggcatattcaggaagtgatggtgttagctaattgccaaccatcagccataaatcaacttcattatttattacaaacaaggcgttacagattcttgtaaaaattcatgagtagggaagtgcagctaagactgagtttttgaagcagttgaagtgttgccgaaatttaaacatgtgggtaaaaagtctacagctctggtagttttacaacgttgttttgatggaatttcttctatatatggagctacttcatgctaagattatgtaaattgtgataatctgccatggctaacactacttatcctttcttcgaaagtgattaaatttcctgaga</dnaseqindica>|
 
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001062422.2 RefSeq:Os05g0488800]|
 
}}
 
[[Category:Genes]]
 
[[Category:Japonica mRNA]]
 
[[Category:Oryza Sativa Japonica Group]]
 
[[Category:Japonica Genes]]
 
[[Category:Japonica Chromosome 5]]
 
[[Category:Chromosome 5]]
 

Latest revision as of 02:46, 26 May 2017

The rice Os05g0488800 was reported as SIRP1 in 2016 [1] by researchers from Korea.

Annotated Information

Gene Symbol

  • Os05g0488800 <=> SIRP1 SIRP1

Function

  • OsSIRP1 acts as a negative regulator of salinity stress tolerance mediated by the ubiquitin 26S proteasome system.

Phenotypic analysis

  • Poly-ubiquitinated products of OsSIRP1 were investigated via an in vitro ubiquitination assay.35S:OsSIRP1-EYFP was distributed in the cytosol of untreated and salt-treated rice protoplasts.
  • Heterogeneous overexpression of OsSIRP1 in Arabidopsis reduced tolerance for salinity stress during seed germination and root growth.

Expression

  • Transcript levels of OsSIRP1 in rice leaves after various stress treatments, including salt, heat, drought and hormone abscisic acid (ABA), were observed.

You can also add sub-section(s) at will.

Labs working on this gene

  • Plant Genomics Laboratory, Department of Applied Plant Sciences, Kangwon National University, Chuncheon 200-713, Korea
  • Agriculture and Life Sciences Research Institute, Kangwon National University, Chuncheon 200-713, Korea

References

  1. Hwang SG, Kim JJ, Lim SD, Park YC, Moon JC, Jang CS. Molecular dissection of Oryza sativa salt-induced RING Finger Protein 1 (OsSIRP1): possible involvement in the sensitivity response to salinity stress. Physiol Plant. 2016 Oct;158(2):168-79. doi: 10.1111/ppl.12459. Epub 2016 Jun 6. PubMed PMID:27118216.


Structured Information