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| − | Please input one-sentence summary here.
| + | The rice '''''Os07g0486000''''' was reported as '''''OsMSH4''''' in 2016 <ref name="ref1" /> by researchers from China. |
| | | | |
| | ==Annotated Information== | | ==Annotated Information== |
| | + | ===Gene Symbol=== |
| | + | *'''''Os07g0486000''''' '''''<=>''''' '''''OsMSH4,MSH4''''' |
| | ===Function=== | | ===Function=== |
| − | Please input function information here.
| + | *'''''OsMSH4''''' heterodimer plays a key role in regulation of crossover formation during rice meiosis by interaction with the RPA complex. |
| | + | |
| | + | ===Phenotypic analysis=== |
| | + | *Compared with the wild type,the '''''Osmsh4''''' mutant displayed a significant ~21.9% reduction in chiasma frequency, which followed a Poisson distribution,suggesting that class I crossover formation in the mutant was impaired. |
| | | | |
| | ===Expression=== | | ===Expression=== |
| − | Please input expression information here.
| + | *'''''OsMSH4''''' was preferentially expressed in meiocytes during their meiosis, indicating a critical role in gametogenesis. |
| | + | |
| | | | |
| − | ===Evolution===
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| − | Please input evolution information here.
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| | | | |
| | You can also add sub-section(s) at will. | | You can also add sub-section(s) at will. |
| | | | |
| | ==Labs working on this gene== | | ==Labs working on this gene== |
| − | Please input related labs here.
| + | *National Key Laboratory for Crop Genetics and Germplasm Enhancement, Jiangsu Plant Gene Engineering Research Center, Nanjing Agricultural University, Nanjing 210095, PR China |
| | + | *National Key Facility for Crop Gene Resources and Genetic Improvement, Institute of Crop Science, Chinese Academy of Agricultural Sciences, Beijing 100081, PR China |
| | | | |
| | ==References== | | ==References== |
| − | Please input cited references here.
| + | <references> |
| | + | * <ref name="ref1"> |
| | + | Wang C, Wang Y, Cheng Z, Zhao Z, Chen J, Sheng P, Yu Y, Ma W, Duan E, Wu F, Liu L, Qin R, Zhang X, Guo X, Wang J, Jiang L, Wan J. The role of OsMSH4 in male and female gamete development in rice meiosis. J Exp Bot. 2016 Mar;67(5):1447-59.doi: 10.1093/jxb/erv540. Epub 2015 Dec 28. PubMed PMID: 26712826; PubMed Central PMCID: PMC4762385. |
| | + | </ref> |
| | + | </references> |
| | + | |
| | | | |
| | ==Structured Information== | | ==Structured Information== |
| − | {{JaponicaGene|
| + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 7]] |
| − | GeneName = Os07g0486000|
| |
| − | Description = Similar to MSH4|
| |
| − | Version = NM_001188272.1 GI:297725674 GeneID:9266513|
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| − | Length = 9703 bp|
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| − | Definition = Oryza sativa Japonica Group Os07g0486000, complete gene.|
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| − | Source = Oryza sativa Japonica Group
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| − | | |
| − | ORGANISM Oryza sativa Japonica Group
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| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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| − | clade; Ehrhartoideae; Oryzeae; Oryza.
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| − | |
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| − | Chromosome = [[:category:Japonica Chromosome 7|Chromosome 7]]|
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| − | AP = Chromosome 7:18530719..18540421|
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| − | CDS = 18530783..18530863,18532057..18532260,18532348..18532383,18532481..18532593,18533183..18533228<br>,18533478..18533524,18533664..18533771,18533987..18534101|
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| − | GCID = <gbrowseImage1>
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| − | name=NC_008400:18530719..18540421
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| − | source=RiceChromosome07
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| − | preset=GeneLocation
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| − | </gbrowseImage1>|
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| − | GSID = <gbrowseImage2>
| |
| − | name=NC_008400:18530719..18540421
| |
| − | source=RiceChromosome07
| |
| − | preset=GeneLocation
| |
| − | </gbrowseImage2>|
| |
| − | CDNA = <cdnaseq>atggagggcgacgccgccggagccggtggcggcgaccggtcgagcatcgtgatcggcctcatcgagaaccgagccaaggaggttggtgttgctgcttttgatttgagatcagcctcactgcatctttctcagtatattgagaccagttgctcatatcacaatacgaagacacttctgcatttctatgatcctatggttgcaatagtgcccccaaacaaaacagcagcagacggtatggttggagtttcagagctggttggtaaacatttgccaacaaataaaaagataacaatggcacgtggctgctttgatgacacaaagggtgctgttatggtaaaaaatctttcagctagagacccatctgcactcggtttagatacttattgcaagcaatactatctttgtcttgctgctgcctctgcaacaattaagtggattgaatcagaaagaggtgtaattatcactaatcactcattatcagttacattcaatgggtcatttgaccacatgaacattgactcaactagtgtacaaacattggaaattattgaccctcttcatactgaactgtggggaactagcaacaaaaagaaaagtctctttcagatgttgaagactacaaagactacaggagggactagactactgagagccaacttgttgcaaccgttaaaagacattcaaacaatcaatactcgtctggattgcttggtaaggagattaatcttttttgttattctcaattcttaa</cdnaseq>|
| |
| − | AA = <aaseq>MEGDAAGAGGGDRSSIVIGLIENRAKEVGVAAFDLRSASLHLSQ YIETSCSYHNTKTLLHFYDPMVAIVPPNKTAADGMVGVSELVGKHLPTNKKITMARGC FDDTKGAVMVKNLSARDPSALGLDTYCKQYYLCLAAASATIKWIESERGVIITNHSLS VTFNGSFDHMNIDSTSVQTLEIIDPLHTELWGTSNKKKSLFQMLKTTKTTGGTRLLRA NLLQPLKDIQTINTRLDCLVRRLIFFVILNS</aaseq>|
| |
| − | DNA = <dnaseqindica>65..145#1339..1542#1630..1665#1763..1875#2465..2510#2760..2806#2946..3053#3269..3383#gcaagcctcactctcctcctccccgcttcggattccaccgtcgcggagctcggcgcgggcggagatggagggcgacgccgccggagccggtggcggcgaccggtcgagcatcgtgatcggcctcatcgagaaccgagccaaggaggtgacgcctctcactgactaaccccccccccccccgccctcccatccctccccctacacccccgcacgcatttttgcttgtcggattgctcgcctagctagcttcctcctcttctcctccaaggcccccgagggtttccgtttcgcgttctactcggtcttcgctgcgccgcggatcggcttcgatcgtgtcgtcggcctgcgtgcgtgttgtgttcgcgctcccgcgggggtggtggtcgatcggatgctgctcgggtggattacttgctctagctggtcagattggtggtggtggtgggggggggggttcgtgttatatggcgttctgagcggcttgatttgagggtttggtggttttaggatttgaggctccagctccatttccggggcgattagagcataccctgtcctcgatagtgctgctctagcggttcgaatcgagttggtgtgatgtgtacagtaaattgttggagaggtgggcacaattactgcagtgacctgctgttgcaattttttcctccactgatttggccggcactttcttacaagttgggaatccggataaccaacggtcaaaggataaagccatttccataacagcaccatgcgccatgcgggaaagcatttttatctacgatatattagttgttctccaggcttgttttgaaggagttgcaagtttcattgtaaacaggaaaattcattggatcatggtgcattggcgcagaagagagaaatttgatcaaagtgttgtagtagatcaactcataaacttattatggatgaattttttttagataatgtattatggatgaacagattgtgaaaatgatttctccattgtacacacttgttttgtggtttactaatgaacaagatcttctgagacgctgacctctctgtacatctttatttttcttgttctaagtcaagtgtatctttagttttggaagcatctcaacatttttgccaacgtaagaattctttgtagtgtcagttttggaaaaaaaaaatcgtgatatgaacacgtgtagattgtctgtgcacgtcagttgataacttgatatgcacaccatccaattcaactcaaattgaaaacatacaaacaaaaatcatggagttaattatttctcaatttctttattatgaaccaaaagatcacgaagatttatcaaactagtatttttgcaggttggtgttgctgcttttgatttgagatcagcctcactgcatctttctcagtatattgagaccagttgctcatatcacaatacgaagacacttctgcatttctatgatcctatggttgcaatagtgcccccaaacaaaacagcagcagacggtatggttggagtttcagagctggttggtaaacatttgccaacaaataaaaaggtgatggctgacatatgcaaatttgttctatgttttctcataatatgaacccactttcgtttattctaaacagagttcaccttttagataacaatggcacgtggctgctttgatgacacaaaggtataatgatttgtattcctttctgaccatttatttgcttaattgttgggtgattaactgctgcttaacatcatgcatgttcttgttttcttttaagggtgctgttatggtaaaaaatctttcagctagagacccatctgcactcggtttagatacttattgcaagcaatactatctttgtcttgctgctgcctctgcaacaattaagtggtacgcgtgctatctttgtctcgatacattgctgggctacattttccctgtttaggattaagttaataacttctgttatgtatctcccatgaacatagttgtgtattgcttcaatatggacataacgacttgacaaagctgtgtcataatttctattttttcaaagtgtaattggagcatatgaacttactatgtactacaacagtgcaactctcaaagcaagtacttactaaattattttacaatttgtctgttacttctcatgtcatttcataggagttatgcctaagcacctcatttgatgatactacttactatttatacaatgccccagaatatttgttgttacttagtacattgaaatggaaactgagataggattttcaagttggatacttggattctataaagcttatcttggatcatcaaaacatatttctcatattgttttttttggtcatagataactatttttttcctcgtattggacggaaatgaggataaaaccgaaatatagcagatgattagatctcatgttgatagtgttgataagtatcacaatgacaatttactttgtttcttcttgcaggattgaatcagaaagaggtgtaattatcactaatcactcattatcagtaagttttttagagttttgtttcatataaatcatcgttgtttagcctttttttcacctgtaaggccattcttacgatattatgtatcaaaagtctccattttgtgactactcttctatgggctatgctgatctgaaaaaaatctatacattatggggtcccatacattatctctaaaaacgttttctctaaaaatgttagctgatgtttccgtatttttctcttatatatgtatgtataacttttcaggttacattcaatgggtcatttgaccacatgaacattgactcaactaggtactcttttggttaaattgagcagtattatctgtcacttgataaatcatcttcaccaaaggagcagaaacaatataagttaaaattttctgctacacgatctgaattgccttcattgttccatatatgcacctagcagtgtacaaacattggaaattattgaccctcttcatactgaactgtggggaactagcaacaaaaagaaaagtctctttcagatgttgaagactacaaagactacaggagggtatggctttcccattctccaaactaatcttttttacatatatttacactgcaacattcaatatctcctcatttttgcaatttgaacaatcttttctgagataaaaagtttcatgtcaacttctattgatggtacaaaatagtttaactttatgtagtctatgtattgaaatatcaagcacactgcaacaattctcttcaaacttgcttgttcaggactagactactgagagccaacttgttgcaaccgttaaaagacattcaaacaatcaatactcgtctggattgcttggtaaggagattaatcttttttgttattctcaattcttaaattggaatgtctgtttgatcaaattggtcatacggtaatcctgacatttgaaacttccaaagttgcacatattaagttctggatcttctagtaggctaggttctggatcttctgtgggaatgaactaacttcatggagtatgaaccctgctttatgcatgtggaaatcttagtgcatatagtcttaaatcgttactcgaagggtttaccacaatcatgtttgtaccatttatagttcatttcctgttggagcactttgcaatataatggagaattttactgcaaccatgattgtacaccacaggccatatgtgaaagtatttccatgagaaggggaagcaatagttcttgtaatattgatatgcaacgctcctttgcaagaatgaaagtcaactggaatctgggatataacaagtattcagttactaatattatcatcgaaaatgatcagtaatatatccaataaatgcatgtttattaattttatatcttaaattttaggatgagctaatgagtaatgaggaattattctttggcttgacacaaggtcttcgtaagtttccaaaagaatcaggtgaacttatgtcctttttctctgtagaaaattctatatcctcttctggctgtgcaacactacagataataggtaaaatggttgctggtgttacaacttccataattttattatgcctcagataaagttctttgccacttctgcttcaaacccaaaaaggatactgatgaagtgctaaagcctgccaatggtagaaagagccaagggctgatttctgacattattgttctaaaaacagctctggatgccataccattcctctccaaggtagtgttatagatgtgtttgtcctagtattcaatttagcaatttattcattctgatttttcattttgttttgtttttgaagatgcatgttattttgttcatttaagggtaaatgtcttttattctagaaacatacccatctaccttttcacgcatgtgatgtgtagctcatcacaggttctaaggggtgcaaaaagtttccttcttcgcaacatttatcagactatatgtgaaaacccaaagtatgcaagcatgagaaagaggtactgttttctgacctttttcctcccatttcaaaggagaagttgaatgaagactgaaaacagcatgctaacttcaggcttagtcttcccatcctgcttttgtttgtacatttgtttttagtttttagtaatattgccagtatattagcattatgtgactgtaaatatgttcgtccacatttattaaataacaagtatatccatctacattctaaaagtaaccattcacctttgatttggttgcatgttttcttttatgatcctagaattggggatgtcattgatgaagatgttgttcattcaagggctccttttgtaacctgcactcaacaatgttttgctattaaggctggaattgatggactgcttgatgttgctcgtagatctttctgtgataccagcgaaggtgtctatcgttttcatgtttgttttctaattttacctaacacagctgattgacataatgcatttttcagccatacataaccttgccaacaagtacagggaggattttaagcttccaaatttgaagataccatataacaacagactaggattttattttattgtaccccagaaggacattactgaaaggctccctaataaatttatccaggtatgtggatatatcccttttaagaaccagcctcttagctaaaccataagatgctaaccaaatatttgtgaatgtgtaatcaattaggtagttagacatgggaagaatgtccactgctcaagcttggagcttgcttcggtaagtttgcatccagtgaattatcatccttgggcatttttagtaattcaacacttactgccacactgcaaatttaaccatgtaattattttctctgggatgctattttcaagtggaataagtgttagtcaatagttattcatttatgttcttttgttttccctcaaagaaagtttatcatcttgtttaagcatcacggagcaaactattcttttgccaaaagcattgggacagtgttatatttttcttctttataagtgtatggtataatttcatcatagctacacgtgaaataagcttttattttatcgattaggatatgacattgaaaaaatataatatgctattggagagtttatttcttcatacggtcacttattaccatgtgctttctacccaaatttgcagctaaatgccaggaataagtctgctgctgctgagtgcttcttgcgcacggaactttgtttggaaggttgccatggccactaaacattgagtattcaacatttttccattggagttttgttactttatttgttgatattgatataggttaagctctggtccagttatcagatacctgttattataattttctagtgataaactagagagttaacatgcaatacatgcatgcataatgtatctgttgcattgggatatcaaattctatatttgttgggcatcctccatataggtagcagctattgtagaacagaacatcatcattcttcttaacttagaatagggatctcctcattttgctttgtttatgaactttttagccatccatttctttgctttcctggcttattttggctgaattggtgggactttgagggtatcatacacttgactaattcaactcacgaacttaaagggaattgaagcttgtggatagtgtaacttgtttctgtgcagcattttacatttcaactagtattattcaagtgtctaaagaaatatttaacttgcataaatctgttctgttgtttcagggcttattaatgagatcagagaagacattggtatattaacgttgcttgccgaagtattatgcctgttggacatgcttgtaaattcttttgcgtttacaatatctactaagcccgttgatcgttacacgagacctgaattcactggtgggcaattcaattcaacactagtaactgatcttgttaaggattttttttagtgatgttgtggagtcctgatctgacagttgcttccaattaagcagatgatggtccgatggcaattaatgctggaaggcatcctattcttgagagcttgcataatgattttgttgtaagttcttcatttgttatttattcctcagtatttacttcatttgtatgtctttttcatcataaatttgttgattgaaatagcaatgatcataatactgtttatatcatgcagcctaacaatctctttctgtctgaagcatctaatatggttcttgtcatggggccaaacatgtgcgttccataaacattgtatccaaatgtctatagcaggctaattatatatggaaattcatctgctctctgcattatctgctgttgcaggagtgggaagagcacatatcttcaacagatttgtctaatagtcattcttgcacaaattggctgttatgttccagctcaatttgcatcactaagagtggttgatcgcgtattcacacggattggcactggggacaatgttgaaaataactcaagcacagtatgcaaattcatctcttctatatggtttatacttatgttatcttgttatttgacttacagaattcttctaaaagcacgtgaaacaataaaatgattagataaagcattcaactgttactgttgatagtcctcaagtaatatttatcccctgagtaccattctttaggcttgtttcctcccagattaattcctatttattatcttaaatctcctgatgcacattatctctattgtgctcaaacctatcaaatttaagatgttttcttgtccatatgaagtataaatggtcatttgcattgtcctgttccagtagttggtgtttttggattccttggtggatttccttaatatagcattagatatggagggtcttaactcctaagatcggtacctgtttgtcatatttatggatgactctacatgaagaagcgcgttgaagtagtggattaaccatcttatctaggatcgcgagagcccatactataccatttcttggtaatatctggatggctgatctggacttttgaattgtttgtatactgtcatttataaccttccttcaagttgtattggccttggacacttgacaaagcaattcacatataatatttcttcgatcaaatcaaatatttcatcaatagttggtcgagcttttcctttgtgagaggcatcttgtagatatttgctttcttaatgaaatgaagcacagttctcctgcgtttttgagaaggaaataaaaacatcaatgctgtatcttttatggagtattagtaattagtctgaagccaattgatgtatagtttatttcaatgctgctaatcagcttaatttctctttgcagttcatgacagaaatgaaagagacagctttcattatgcagaatgtttcttcgaagtactatgggtctaccatgctgcaatagattggattgctgtttctcttgtttccttgtaatgaccatgtgcacatttgcacacattacaggagcctgattgttgtggatgagcttggaagagctacgtcttcctctgatgggttggcaattgcatggagctgctgtgaatatctattatctaccaaagcgtaagaactattaacctcttaagtaccacatttgatccttttcatgcagcataatttgacttatcacagtcctaacttggtggggtctgtatgaaataacttatgtgccttttaattgagtgcttctgaaaaagagatgatgatttgtgtacgttgtcatacttaaattcttagcagacaatgaaatagataagggcagaagagataaactaccatttttctacatgcatgcttactatttttgaacaagaagaggaagctaatatgcattgtaagactggagggagtatcaatattcacagcagatgttttcttgtcaatagttttgaaactgcatgcttttctaaatgtgttgtctaggcttctgttattcagttacctcatccaacatttttgtagcctatttattcaaccatatccatatgttctcatcttgaatcaaatatttgatcgtgataatggttagtacaagaacatttactacttgtcttgtgctcaccttaggccgtgctaccatcaagtttcagatatcatatttatcacagaacctactacttccgtcccaaaatatagcaacttttggctatgtatcttgacacgcttttgtccagatacatagctagaagttgttatattttgggttagatattagcagtaagttcagcatagtgcctgggggtgcttgacatgctgaatgcagctggtcatgtttggttaatcttgccaaccacaatatggtctattagttacagatataaccttttaagacaagatatcatccttgttgagcaaatcctactatcttagaagcatcactgtcgggtcttttcacccaatgcagctacacggtgtttgccacgcacatggagagcttgtcagaacttgcaaccatctatccaaacgtgaagatcctccattttgaagtcgacctgagaaacgaccgcctcgatttcaaggtataacctgaatcgttgacagtcacatgacttttttttttcatgtctcttaacatcatggatcatacaatccctctgcatcagttccggttgaaggatggtgtccggaaagtaccacactatggtcttttgctggcaaaggtggctggtctcccttcttcagtgatcgacactgcagcaagcatcacttcacggatcacagaacaggtaaacctctcagtactgattagagctgatgttgataacacagtgtgtgtgactgcttagattacattatgcaactcaaattgtatgcccattttcttctacttgggtccttttcttttttgactgcacagccttgctcgttcctgctgctggatttgatttcttctactcgagcgcattgatcaagtcaagtttacctgttttgatcccggcctgcaggaaatggtgaggaaggacgacaactgcgagcagtaccggtcgctccagatggcgtaccaggtcacgcaacggctcatctgcttgaagcaatccaaccaaggcgatgactacatccgggaagcgttgcagaatctcaaggacggctatgctgcaggccgcttgacatgagaagaaaaatatatgtaaaaaggagtttttgtttctctctcctacagctggcagcatgtatggattatggtcgtatggatgtagccatgtagggcacccc</dnaseqindica>|
| |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001188272.1 RefSeq:Os07g0486000]|
| |
| − | }}
| |
| − | [[Category:Genes]] | |
| − | [[Category:Japonica mRNA]]
| |
| − | [[Category:Oryza Sativa Japonica Group]] | |
| − | [[Category:Japonica Genes]] | |
| − | [[Category:Japonica Chromosome 7]]
| |
| − | [[Category:Chromosome 7]]
| |
