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| − | {{JaponicaGene|
| + | The rice '''''Os07g0486000''''' was reported as '''''OsMSH4''''' in 2016 <ref name="ref1" /> by researchers from China. |
| − | GeneName = Os07g0486000|
| |
| − | Description = Similar to MSH4|
| |
| − | Version = NM_001188272.1 GI:297725674 GeneID:9266513|
| |
| − | Length = 9703 bp|
| |
| − | Definition = Oryza sativa Japonica Group Os07g0486000, complete gene.|
| |
| − | Source = Oryza sativa Japonica Group
| |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| + | ==Annotated Information== |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | ===Gene Symbol=== |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| + | *'''''Os07g0486000''''' '''''<=>''''' '''''OsMSH4,MSH4''''' |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| + | ===Function=== |
| − | |
| + | *'''''OsMSH4''''' heterodimer plays a key role in regulation of crossover formation during rice meiosis by interaction with the RPA complex. |
| − | Chromosome = [[:category:Japonica Chromosome 7|Chromosome 7]]|
| + | |
| − | AP = Chromosome 7:18530719..18540421|
| + | ===Phenotypic analysis=== |
| − | CDS = 18530783..18530863,18532057..18532260,18532348..18532383,18532481..18532593,18533183..18533228<br>,18533478..18533524,18533664..18533771,18533987..18534101|
| + | *Compared with the wild type,the '''''Osmsh4''''' mutant displayed a significant ~21.9% reduction in chiasma frequency, which followed a Poisson distribution,suggesting that class I crossover formation in the mutant was impaired. |
| − | GCID = <gbrowseImage1>
| + | |
| − | name=NC_008400:18530719..18540421
| + | ===Expression=== |
| − | source=RiceChromosome07
| + | *'''''OsMSH4''''' was preferentially expressed in meiocytes during their meiosis, indicating a critical role in gametogenesis. |
| − | preset=GeneLocation
| + | |
| − | </gbrowseImage1>|
| + | |
| − | GSID = <gbrowseImage2>
| + | |
| − | name=NC_008400:18530719..18540421
| + | You can also add sub-section(s) at will. |
| − | source=RiceChromosome07
| + | |
| − | preset=GeneLocation
| + | ==Labs working on this gene== |
| − | </gbrowseImage2>| | + | *National Key Laboratory for Crop Genetics and Germplasm Enhancement, Jiangsu Plant Gene Engineering Research Center, Nanjing Agricultural University, Nanjing 210095, PR China |
| − | CDNA = <cdnaseq>atggagggcgacgccgccggagccggtggcggcgaccggtcgagcatcgtgatcggcctcatcgagaaccgagccaaggaggttggtgttgctgcttttgatttgagatcagcctcactgcatctttctcagtatattgagaccagttgctcatatcacaatacgaagacacttctgcatttctatgatcctatggttgcaatagtgcccccaaacaaaacagcagcagacggtatggttggagtttcagagctggttggtaaacatttgccaacaaataaaaagataacaatggcacgtggctgctttgatgacacaaagggtgctgttatggtaaaaaatctttcagctagagacccatctgcactcggtttagatacttattgcaagcaatactatctttgtcttgctgctgcctctgcaacaattaagtggattgaatcagaaagaggtgtaattatcactaatcactcattatcagttacattcaatgggtcatttgaccacatgaacattgactcaactagtgtacaaacattggaaattattgaccctcttcatactgaactgtggggaactagcaacaaaaagaaaagtctctttcagatgttgaagactacaaagactacaggagggactagactactgagagccaacttgttgcaaccgttaaaagacattcaaacaatcaatactcgtctggattgcttggtaaggagattaatcttttttgttattctcaattcttaa</cdnaseq>|
| + | *National Key Facility for Crop Gene Resources and Genetic Improvement, Institute of Crop Science, Chinese Academy of Agricultural Sciences, Beijing 100081, PR China |
| − | AA = <aaseq>MEGDAAGAGGGDRSSIVIGLIENRAKEVGVAAFDLRSASLHLSQ YIETSCSYHNTKTLLHFYDPMVAIVPPNKTAADGMVGVSELVGKHLPTNKKITMARGC FDDTKGAVMVKNLSARDPSALGLDTYCKQYYLCLAAASATIKWIESERGVIITNHSLS VTFNGSFDHMNIDSTSVQTLEIIDPLHTELWGTSNKKKSLFQMLKTTKTTGGTRLLRA NLLQPLKDIQTINTRLDCLVRRLIFFVILNS</aaseq>|
| + | |
| − | DNA = <dnaseqindica>65..145#1339..1542#1630..1665#1763..1875#2465..2510#2760..2806#2946..3053#3269..3383#gcaagcctcactctcctcctccccgcttcggattccaccgtcgcggagctcggcgcgggcggagatggagggcgacgccgccggagccggtggcggcgaccggtcgagcatcgtgatcggcctcatcgagaaccgagccaaggaggtgacgcctctcactgactaaccccccccccccccgccctcccatccctccccctacacccccgcacgcatttttgcttgtcggattgctcgcctagctagcttcctcctcttctcctccaaggcccccgagggtttccgtttcgcgttctactcggtcttcgctgcgccgcggatcggcttcgatcgtgtcgtcggcctgcgtgcgtgttgtgttcgcgctcccgcgggggtggtggtcgatcggatgctgctcgggtggattacttgctctagctggtcagattggtggtggtggtgggggggggggttcgtgttatatggcgttctgagcggcttgatttgagggtttggtggttttaggatttgaggctccagctccatttccggggcgattagagcataccctgtcctcgatagtgctgctctagcggttcgaatcgagttggtgtgatgtgtacagtaaattgttggagaggtgggcacaattactgcagtgacctgctgttgcaattttttcctccactgatttggccggcactttcttacaagttgggaatccggataaccaacggtcaaaggataaagccatttccataacagcaccatgcgccatgcgggaaagcatttttatctacgatatattagttgttctccaggcttgttttgaaggagttgcaagtttcattgtaaacaggaaaattcattggatcatggtgcattggcgcagaagagagaaatttgatcaaagtgttgtagtagatcaactcataaacttattatggatgaattttttttagataatgtattatggatgaacagattgtgaaaatgatttctccattgtacacacttgttttgtggtttactaatgaacaagatcttctgagacgctgacctctctgtacatctttatttttcttgttctaagtcaagtgtatctttagttttggaagcatctcaacatttttgccaacgtaagaattctttgtagtgtcagttttggaaaaaaaaaatcgtgatatgaacacgtgtagattgtctgtgcacgtcagttgataacttgatatgcacaccatccaattcaactcaaattgaaaacatacaaacaaaaatcatggagttaattatttctcaatttctttattatgaaccaaaagatcacgaagatttatcaaactagtatttttgcaggttggtgttgctgcttttgatttgagatcagcctcactgcatctttctcagtatattgagaccagttgctcatatcacaatacgaagacacttctgcatttctatgatcctatggttgcaatagtgcccccaaacaaaacagcagcagacggtatggttggagtttcagagctggttggtaaacatttgccaacaaataaaaaggtgatggctgacatatgcaaatttgttctatgttttctcataatatgaacccactttcgtttattctaaacagagttcaccttttagataacaatggcacgtggctgctttgatgacacaaaggtataatgatttgtattcctttctgaccatttatttgcttaattgttgggtgattaactgctgcttaacatcatgcatgttcttgttttcttttaagggtgctgttatggtaaaaaatctttcagctagagacccatctgcactcggtttagatacttattgcaagcaatactatctttgtcttgctgctgcctctgcaacaattaagtggtacgcgtgctatctttgtctcgatacattgctgggctacattttccctgtttaggattaagttaataacttctgttatgtatctcccatgaacatagttgtgtattgcttcaatatggacataacgacttgacaaagctgtgtcataatttctattttttcaaagtgtaattggagcatatgaacttactatgtactacaacagtgcaactctcaaagcaagtacttactaaattattttacaatttgtctgttacttctcatgtcatttcataggagttatgcctaagcacctcatttgatgatactacttactatttatacaatgccccagaatatttgttgttacttagtacattgaaatggaaactgagataggattttcaagttggatacttggattctataaagcttatcttggatcatcaaaacatatttctcatattgttttttttggtcatagataactatttttttcctcgtattggacggaaatgaggataaaaccgaaatatagcagatgattagatctcatgttgatagtgttgataagtatcacaatgacaatttactttgtttcttcttgcaggattgaatcagaaagaggtgtaattatcactaatcactcattatcagtaagttttttagagttttgtttcatataaatcatcgttgtttagcctttttttcacctgtaaggccattcttacgatattatgtatcaaaagtctccattttgtgactactcttctatgggctatgctgatctgaaaaaaatctatacattatggggtcccatacattatctctaaaaacgttttctctaaaaatgttagctgatgtttccgtatttttctcttatatatgtatgtataacttttcaggttacattcaatgggtcatttgaccacatgaacattgactcaactaggtactcttttggttaaattgagcagtattatctgtcacttgataaatcatcttcaccaaaggagcagaaacaatataagttaaaattttctgctacacgatctgaattgccttcattgttccatatatgcacctagcagtgtacaaacattggaaattattgaccctcttcatactgaactgtggggaactagcaacaaaaagaaaagtctctttcagatgttgaagactacaaagactacaggagggtatggctttcccattctccaaactaatcttttttacatatatttacactgcaacattcaatatctcctcatttttgcaatttgaacaatcttttctgagataaaaagtttcatgtcaacttctattgatggtacaaaatagtttaactttatgtagtctatgtattgaaatatcaagcacactgcaacaattctcttcaaacttgcttgttcaggactagactactgagagccaacttgttgcaaccgttaaaagacattcaaacaatcaatactcgtctggattgcttggtaaggagattaatcttttttgttattctcaattcttaaattggaatgtctgtttgatcaaattggtcatacggtaatcctgacatttgaaacttccaaagttgcacatattaagttctggatcttctagtaggctaggttctggatcttctgtgggaatgaactaacttcatggagtatgaaccctgctttatgcatgtggaaatcttagtgcatatagtcttaaatcgttactcgaagggtttaccacaatcatgtttgtaccatttatagttcatttcctgttggagcactttgcaatataatggagaattttactgcaaccatgattgtacaccacaggccatatgtgaaagtatttccatgagaaggggaagcaatagttcttgtaatattgatatgcaacgctcctttgcaagaatgaaagtcaactggaatctgggatataacaagtattcagttactaatattatcatcgaaaatgatcagtaatatatccaataaatgcatgtttattaattttatatcttaaattttaggatgagctaatgagtaatgaggaattattctttggcttgacacaaggtcttcgtaagtttccaaaagaatcaggtgaacttatgtcctttttctctgtagaaaattctatatcctcttctggctgtgcaacactacagataataggtaaaatggttgctggtgttacaacttccataattttattatgcctcagataaagttctttgccacttctgcttcaaacccaaaaaggatactgatgaagtgctaaagcctgccaatggtagaaagagccaagggctgatttctgacattattgttctaaaaacagctctggatgccataccattcctctccaaggtagtgttatagatgtgtttgtcctagtattcaatttagcaatttattcattctgatttttcattttgttttgtttttgaagatgcatgttattttgttcatttaagggtaaatgtcttttattctagaaacatacccatctaccttttcacgcatgtgatgtgtagctcatcacaggttctaaggggtgcaaaaagtttccttcttcgcaacatttatcagactatatgtgaaaacccaaagtatgcaagcatgagaaagaggtactgttttctgacctttttcctcccatttcaaaggagaagttgaatgaagactgaaaacagcatgctaacttcaggcttagtcttcccatcctgcttttgtttgtacatttgtttttagtttttagtaatattgccagtatattagcattatgtgactgtaaatatgttcgtccacatttattaaataacaagtatatccatctacattctaaaagtaaccattcacctttgatttggttgcatgttttcttttatgatcctagaattggggatgtcattgatgaagatgttgttcattcaagggctccttttgtaacctgcactcaacaatgttttgctattaaggctggaattgatggactgcttgatgttgctcgtagatctttctgtgataccagcgaaggtgtctatcgttttcatgtttgttttctaattttacctaacacagctgattgacataatgcatttttcagccatacataaccttgccaacaagtacagggaggattttaagcttccaaatttgaagataccatataacaacagactaggattttattttattgtaccccagaaggacattactgaaaggctccctaataaatttatccaggtatgtggatatatcccttttaagaaccagcctcttagctaaaccataagatgctaaccaaatatttgtgaatgtgtaatcaattaggtagttagacatgggaagaatgtccactgctcaagcttggagcttgcttcggtaagtttgcatccagtgaattatcatccttgggcatttttagtaattcaacacttactgccacactgcaaatttaaccatgtaattattttctctgggatgctattttcaagtggaataagtgttagtcaatagttattcatttatgttcttttgttttccctcaaagaaagtttatcatcttgtttaagcatcacggagcaaactattcttttgccaaaagcattgggacagtgttatatttttcttctttataagtgtatggtataatttcatcatagctacacgtgaaataagcttttattttatcgattaggatatgacattgaaaaaatataatatgctattggagagtttatttcttcatacggtcacttattaccatgtgctttctacccaaatttgcagctaaatgccaggaataagtctgctgctgctgagtgcttcttgcgcacggaactttgtttggaaggttgccatggccactaaacattgagtattcaacatttttccattggagttttgttactttatttgttgatattgatataggttaagctctggtccagttatcagatacctgttattataattttctagtgataaactagagagttaacatgcaatacatgcatgcataatgtatctgttgcattgggatatcaaattctatatttgttgggcatcctccatataggtagcagctattgtagaacagaacatcatcattcttcttaacttagaatagggatctcctcattttgctttgtttatgaactttttagccatccatttctttgctttcctggcttattttggctgaattggtgggactttgagggtatcatacacttgactaattcaactcacgaacttaaagggaattgaagcttgtggatagtgtaacttgtttctgtgcagcattttacatttcaactagtattattcaagtgtctaaagaaatatttaacttgcataaatctgttctgttgtttcagggcttattaatgagatcagagaagacattggtatattaacgttgcttgccgaagtattatgcctgttggacatgcttgtaaattcttttgcgtttacaatatctactaagcccgttgatcgttacacgagacctgaattcactggtgggcaattcaattcaacactagtaactgatcttgttaaggattttttttagtgatgttgtggagtcctgatctgacagttgcttccaattaagcagatgatggtccgatggcaattaatgctggaaggcatcctattcttgagagcttgcataatgattttgttgtaagttcttcatttgttatttattcctcagtatttacttcatttgtatgtctttttcatcataaatttgttgattgaaatagcaatgatcataatactgtttatatcatgcagcctaacaatctctttctgtctgaagcatctaatatggttcttgtcatggggccaaacatgtgcgttccataaacattgtatccaaatgtctatagcaggctaattatatatggaaattcatctgctctctgcattatctgctgttgcaggagtgggaagagcacatatcttcaacagatttgtctaatagtcattcttgcacaaattggctgttatgttccagctcaatttgcatcactaagagtggttgatcgcgtattcacacggattggcactggggacaatgttgaaaataactcaagcacagtatgcaaattcatctcttctatatggtttatacttatgttatcttgttatttgacttacagaattcttctaaaagcacgtgaaacaataaaatgattagataaagcattcaactgttactgttgatagtcctcaagtaatatttatcccctgagtaccattctttaggcttgtttcctcccagattaattcctatttattatcttaaatctcctgatgcacattatctctattgtgctcaaacctatcaaatttaagatgttttcttgtccatatgaagtataaatggtcatttgcattgtcctgttccagtagttggtgtttttggattccttggtggatttccttaatatagcattagatatggagggtcttaactcctaagatcggtacctgtttgtcatatttatggatgactctacatgaagaagcgcgttgaagtagtggattaaccatcttatctaggatcgcgagagcccatactataccatttcttggtaatatctggatggctgatctggacttttgaattgtttgtatactgtcatttataaccttccttcaagttgtattggccttggacacttgacaaagcaattcacatataatatttcttcgatcaaatcaaatatttcatcaatagttggtcgagcttttcctttgtgagaggcatcttgtagatatttgctttcttaatgaaatgaagcacagttctcctgcgtttttgagaaggaaataaaaacatcaatgctgtatcttttatggagtattagtaattagtctgaagccaattgatgtatagtttatttcaatgctgctaatcagcttaatttctctttgcagttcatgacagaaatgaaagagacagctttcattatgcagaatgtttcttcgaagtactatgggtctaccatgctgcaatagattggattgctgtttctcttgtttccttgtaatgaccatgtgcacatttgcacacattacaggagcctgattgttgtggatgagcttggaagagctacgtcttcctctgatgggttggcaattgcatggagctgctgtgaatatctattatctaccaaagcgtaagaactattaacctcttaagtaccacatttgatccttttcatgcagcataatttgacttatcacagtcctaacttggtggggtctgtatgaaataacttatgtgccttttaattgagtgcttctgaaaaagagatgatgatttgtgtacgttgtcatacttaaattcttagcagacaatgaaatagataagggcagaagagataaactaccatttttctacatgcatgcttactatttttgaacaagaagaggaagctaatatgcattgtaagactggagggagtatcaatattcacagcagatgttttcttgtcaatagttttgaaactgcatgcttttctaaatgtgttgtctaggcttctgttattcagttacctcatccaacatttttgtagcctatttattcaaccatatccatatgttctcatcttgaatcaaatatttgatcgtgataatggttagtacaagaacatttactacttgtcttgtgctcaccttaggccgtgctaccatcaagtttcagatatcatatttatcacagaacctactacttccgtcccaaaatatagcaacttttggctatgtatcttgacacgcttttgtccagatacatagctagaagttgttatattttgggttagatattagcagtaagttcagcatagtgcctgggggtgcttgacatgctgaatgcagctggtcatgtttggttaatcttgccaaccacaatatggtctattagttacagatataaccttttaagacaagatatcatccttgttgagcaaatcctactatcttagaagcatcactgtcgggtcttttcacccaatgcagctacacggtgtttgccacgcacatggagagcttgtcagaacttgcaaccatctatccaaacgtgaagatcctccattttgaagtcgacctgagaaacgaccgcctcgatttcaaggtataacctgaatcgttgacagtcacatgacttttttttttcatgtctcttaacatcatggatcatacaatccctctgcatcagttccggttgaaggatggtgtccggaaagtaccacactatggtcttttgctggcaaaggtggctggtctcccttcttcagtgatcgacactgcagcaagcatcacttcacggatcacagaacaggtaaacctctcagtactgattagagctgatgttgataacacagtgtgtgtgactgcttagattacattatgcaactcaaattgtatgcccattttcttctacttgggtccttttcttttttgactgcacagccttgctcgttcctgctgctggatttgatttcttctactcgagcgcattgatcaagtcaagtttacctgttttgatcccggcctgcaggaaatggtgaggaaggacgacaactgcgagcagtaccggtcgctccagatggcgtaccaggtcacgcaacggctcatctgcttgaagcaatccaaccaaggcgatgactacatccgggaagcgttgcagaatctcaaggacggctatgctgcaggccgcttgacatgagaagaaaaatatatgtaaaaaggagtttttgtttctctctcctacagctggcagcatgtatggattatggtcgtatggatgtagccatgtagggcacccc</dnaseqindica>|
| + | ==References== |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001188272.1 RefSeq:Os07g0486000]|
| + | <references> |
| − | }}
| + | * <ref name="ref1"> |
| − | [[Category:Genes]] | + | Wang C, Wang Y, Cheng Z, Zhao Z, Chen J, Sheng P, Yu Y, Ma W, Duan E, Wu F, Liu L, Qin R, Zhang X, Guo X, Wang J, Jiang L, Wan J. The role of OsMSH4 in male and female gamete development in rice meiosis. J Exp Bot. 2016 Mar;67(5):1447-59.doi: 10.1093/jxb/erv540. Epub 2015 Dec 28. PubMed PMID: 26712826; PubMed Central PMCID: PMC4762385. |
| − | [[Category:Japonica mRNA]]
| + | </ref> |
| − | [[Category:Oryza Sativa Japonica Group]] | + | </references> |
| − | [[Category:Japonica Genes]]
| + | |
| − | [[Category:Japonica Chromosome 7]] | + | |
| − | [[Category:Chromosome 7]]
| + | ==Structured Information== |
| | + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 7]] |
