Difference between revisions of "Os02g0202400"

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Please input one-sentence summary here.
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The rice '''''Os02g0202400''''' was reported as '''''OsBT1''''' in 2016 <ref name="ref1" /> by researchers from India and Japan.  
  
 
==Annotated Information==
 
==Annotated Information==
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===Gene Symbol===
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*'''''Os02g0202400''''' '''''<=>''''' '''''OsBT1''''' '''''BT1'''''
 
===Function===
 
===Function===
Please input function information here.
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*Major ADPglc transporter by studying the shrunken3 locus of the EM1093 rice line, which harbors a mutation in the '''''BRITTLE1(BT1)''''' adenylate transporter(OsBt1) gene.
  
===Expression===
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===Phenotypic analysis===
Please input expression information here.
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*ADPglc transport assays indicated that transgenic lines expressing ZmBT1 alone or combined with GlgC exhibited higher rates of transport (approximately 2-fold), with the GlgC (CS8) and GlgC/ZmBT1 (CS8/AT5) lines showing elevated ADPglc levels in amyloplasts.
  
===Evolution===
 
Please input evolution information here.
 
  
 
You can also add sub-section(s) at will.
 
You can also add sub-section(s) at will.
  
 
==Labs working on this gene==
 
==Labs working on this gene==
Please input related labs here.
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*Institute of Biological Chemistry, Washington State University, Pullman, Washington 99164 (B.C., A.T., S.-K.H.,T.W.O.); Faculty of Agriculture, Kyushu University, Fukuoka 812–8581, Japan (S.Sh., H.M., R.S., H.S.);
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*Department of Agricultural Biotechnology, Assam Agricultural University, Jorhat–785013, Assam, India (S.Si.);
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*Department of Biological Production, Akita Prefectural University, Akita City, Akita 010–01195, Japan(N.C., Y.H., N.F.)
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==References==
 
==References==
Please input cited references here.
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<references>
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* <ref name="ref1">
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Cakir B, Shiraishi S, Tuncel A, Matsusaka H, Satoh R, Singh S, Crofts N, Hosaka Y, Fujita N, Hwang SK, Satoh H, Okita TW. Analysis of the Rice ADP-Glucose Transporter (OsBT1) Indicates the Presence of Regulatory Processes in the Amyloplast Stroma That Control ADP-Glucose Flux into Starch. Plant Physiol. 2016 Mar;170(3):1271-83. doi: 10.1104/pp.15.01911. Epub 2016 Jan 11. PubMed PMID:26754668; PubMed Central PMCID: PMC4775147.
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</ref>
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</references>
  
 
==Structured Information==
 
==Structured Information==
{{JaponicaGene|
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    [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 2]]
GeneName = Os02g0202400|
 
Description = Similar to Plastidial ADP-glucose transporter|
 
Version = NM_001052765.1 GI:115444900 GeneID:4328656|
 
Length = 2185 bp|
 
Definition = Oryza sativa Japonica Group Os02g0202400, complete gene.|
 
Source = Oryza sativa Japonica Group
 
 
 
  ORGANISM  Oryza sativa Japonica Group
 
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
 
            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
 
            clade; Ehrhartoideae; Oryzeae; Oryza.
 
|
 
Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|
 
AP = Chromosome 2:5736608..5738792|
 
CDS = 5736778..5737372,5737449..5737612,5737986..5738504|
 
GCID = <gbrowseImage1>
 
name=NC_008395:5736608..5738792
 
source=RiceChromosome02
 
preset=GeneLocation
 
</gbrowseImage1>|
 
GSID = <gbrowseImage2>
 
name=NC_008395:5736608..5738792
 
source=RiceChromosome02
 
preset=GeneLocation
 
</gbrowseImage2>|
 
CDNA = <cdnaseq>atggcggcgatgatggcggtgacgacgatggtgacgaggaacaacgccgtcggcggcggcgcggtggcggtggtggacaggaaggggtggttcgtcccggaggtgtcgttcccgtggagctcggtggaaggggagtgcatcaacagcagcagcaagaggttggagttccctcgccggacggctgcgccgccgctgttcgccagcgtcgggctcagcttgccgtctgcggcgaagggccgggacaactgcgacgtcgcgcggcagctcgccgccgcggaggccgaggaggcggcggggaagaagaggcagggcaggaagatgaagggcggcggcgggctgctgtcgctgaggaaggtgagggtgaagatcgggaacccgcaccttcgccggctggtgagcggcgccatcgccggcgccgtgtcgcgcaccttcgtggcgccgctggagaccatccgcacccacctcatggtcggcagctgcggcgccggctccatggccgaggtcttccgctggatcatgcgcaccgagggctggaccggcctcttccgcggcaacgccgtcaacgtcctccgcgtcgcccccagcaaggccatcgagcatttcacctacgacacggccaagaagtacctcaccccggaggacggcgagcctgccaagatccccatccccgtccccctcgtcgccggcgccctcgccggtgtcgcctccaccctctgcacctaccccatggagctcgtcaagacccgcctcaccatcgagaaggacgtgtacgacaacgtgctgcacgcgttcgtgaagatcgtgcgggagggcgggccgggggagctgtaccgcggcctggcgccgagcctgatcggcgtggtgccctacgcggccaccaacttctacgcctacgagacgctgcgccgcctgtaccgccgcgccacggggcgcgccgacgtcggcccggccgcgacgctgctcatcgggtcggcggcgggcgccatcgccagcacggccaccttcccgctcgaggtcgcccgcaagcagatgcaggtcggcgccgtcggcggccggcaggtgtaccgccacgtgctccacgccatgtactgcatcctccgcggcgagggcgccgcgggcctctaccgcggcctcggccccagctgcatcaagctcatgcccgccgccggcatctccttcatgtgctacgaggcgctcaagaaggtactcgtcgaggaggaggcggcgccggagctggaggcggagtgcgcggaggagatcaaggagaaggttgcgtga</cdnaseq>|
 
AA = <aaseq>MAAMMAVTTMVTRNNAVGGGAVAVVDRKGWFVPEVSFPWSSVEG                    ECINSSSKRLEFPRRTAAPPLFASVGLSLPSAAKGRDNCDVARQLAAAEAEEAAGKKR                    QGRKMKGGGGLLSLRKVRVKIGNPHLRRLVSGAIAGAVSRTFVAPLETIRTHLMVGSC                    GAGSMAEVFRWIMRTEGWTGLFRGNAVNVLRVAPSKAIEHFTYDTAKKYLTPEDGEPA                    KIPIPVPLVAGALAGVASTLCTYPMELVKTRLTIEKDVYDNVLHAFVKIVREGGPGEL                    YRGLAPSLIGVVPYAATNFYAYETLRRLYRRATGRADVGPAATLLIGSAAGAIASTAT                    FPLEVARKQMQVGAVGGRQVYRHVLHAMYCILRGEGAAGLYRGLGPSCIKLMPAAGIS                    FMCYEALKKVLVEEEAAPELEAECAEEIKEKVA</aaseq>|
 
DNA = <dnaseqindica>171..765#842..1005#1379..1897#acaccagccaggaatcagaagccagaagcagcaacgctcgctctgattctttctttcctcctcgagctaggtgcgtagttgtcatatttgatcgatcggttttagttcttcttgtttaattttgattgcgcttgtagcagcaggaagtagttttaattttggtgtgatcgatggcggcgatgatggcggtgacgacgatggtgacgaggaacaacgccgtcggcggcggcgcggtggcggtggtggacaggaaggggtggttcgtcccggaggtgtcgttcccgtggagctcggtggaaggggagtgcatcaacagcagcagcaagaggttggagttccctcgccggacggctgcgccgccgctgttcgccagcgtcgggctcagcttgccgtctgcggcgaagggccgggacaactgcgacgtcgcgcggcagctcgccgccgcggaggccgaggaggcggcggggaagaagaggcagggcaggaagatgaagggcggcggcgggctgctgtcgctgaggaaggtgagggtgaagatcgggaacccgcaccttcgccggctggtgagcggcgccatcgccggcgccgtgtcgcgcaccttcgtggcgccgctggagaccatccgcacccacctcatggtcggcagctgcggcgccggctccatggccgaggtcttccgctggatcatgcgcaccgagggctggaccggcctcttccgcggcaacgccgtcaacgtcctccgcgtcgcccccagcaaggccatcgaggcaaccaactcaacctcacaccctccactttgtttttctttgaatttctcgtgatcgaatccatggcgtcctgcagcatttcacctacgacacggccaagaagtacctcaccccggaggacggcgagcctgccaagatccccatccccgtccccctcgtcgccggcgccctcgccggtgtcgcctccaccctctgcacctaccccatggagctcgtcaagacccgcctcaccatcgaggtaaacacaaacacacacaaacccccatcaaaaccttcaaaatcgatcaaactaatcacgaaagtggatttttttccccctccagatgacatcccctagttttgtgtatgcgattcaatacatgatatatcttttgcaaatatgcaagttaaaattcaacttatacaattcgaaacaaaaataacaaatttgacccataaattacgcgttctactcgtacaagttaaatttaaatttgcatgtttgtgaagtgacatatctctattctactaaaattttttaatgatcttttaagtgacatgtaaaaatgaggagatatcccaaattgagttttccaactaatcaccaccgccattgttgcgttttcttgcagaaggacgtgtacgacaacgtgctgcacgcgttcgtgaagatcgtgcgggagggcgggccgggggagctgtaccgcggcctggcgccgagcctgatcggcgtggtgccctacgcggccaccaacttctacgcctacgagacgctgcgccgcctgtaccgccgcgccacggggcgcgccgacgtcggcccggccgcgacgctgctcatcgggtcggcggcgggcgccatcgccagcacggccaccttcccgctcgaggtcgcccgcaagcagatgcaggtcggcgccgtcggcggccggcaggtgtaccgccacgtgctccacgccatgtactgcatcctccgcggcgagggcgccgcgggcctctaccgcggcctcggccccagctgcatcaagctcatgcccgccgccggcatctccttcatgtgctacgaggcgctcaagaaggtactcgtcgaggaggaggcggcgccggagctggaggcggagtgcgcggaggagatcaaggagaaggttgcgtgaagtggtttgggctcgccggcgccggagaagatggtggctgattgtgcatgggtgtgatgatggaagcatgcaagaaaagaagaaaaaaaagaagcaaaaaatggagagaagtttgtggttgctgtggtttgaagttggatgaatcatcgtaggattcgatttcctctgttcaggaggcatatggtgtgttttcaatgaagtgatgcatttcaagtttgttttcaatatatctatgtattgcatttcaagtttgttttcaataaaatctatgtatttccagttcaattt</dnaseqindica>|
 
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001052765.1 RefSeq:Os02g0202400]|
 
}}
 
[[Category:Genes]]
 
[[Category:Japonica mRNA]]
 
[[Category:Oryza Sativa Japonica Group]]
 
[[Category:Japonica Genes]]
 
[[Category:Japonica Chromosome 2]]
 
[[Category:Chromosome 2]]
 

Latest revision as of 08:50, 27 May 2017

The rice Os02g0202400 was reported as OsBT1 in 2016 [1] by researchers from India and Japan.

Annotated Information

Gene Symbol

  • Os02g0202400 <=> OsBT1 BT1

Function

  • Major ADPglc transporter by studying the shrunken3 locus of the EM1093 rice line, which harbors a mutation in the BRITTLE1(BT1) adenylate transporter(OsBt1) gene.

Phenotypic analysis

  • ADPglc transport assays indicated that transgenic lines expressing ZmBT1 alone or combined with GlgC exhibited higher rates of transport (approximately 2-fold), with the GlgC (CS8) and GlgC/ZmBT1 (CS8/AT5) lines showing elevated ADPglc levels in amyloplasts.


You can also add sub-section(s) at will.

Labs working on this gene

  • Institute of Biological Chemistry, Washington State University, Pullman, Washington 99164 (B.C., A.T., S.-K.H.,T.W.O.); Faculty of Agriculture, Kyushu University, Fukuoka 812–8581, Japan (S.Sh., H.M., R.S., H.S.);
  • Department of Agricultural Biotechnology, Assam Agricultural University, Jorhat–785013, Assam, India (S.Si.);
  • Department of Biological Production, Akita Prefectural University, Akita City, Akita 010–01195, Japan(N.C., Y.H., N.F.)


References

  1. Cakir B, Shiraishi S, Tuncel A, Matsusaka H, Satoh R, Singh S, Crofts N, Hosaka Y, Fujita N, Hwang SK, Satoh H, Okita TW. Analysis of the Rice ADP-Glucose Transporter (OsBT1) Indicates the Presence of Regulatory Processes in the Amyloplast Stroma That Control ADP-Glucose Flux into Starch. Plant Physiol. 2016 Mar;170(3):1271-83. doi: 10.1104/pp.15.01911. Epub 2016 Jan 11. PubMed PMID:26754668; PubMed Central PMCID: PMC4775147.

Structured Information