Difference between revisions of "Os02g0202400"

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(Created page with "{{JaponicaGene| GeneName = Os02g0202400| Description = Similar to Plastidial ADP-glucose transporter| Version = NM_001052765.1 GI:115444900 GeneID:4328656| Length = 2185 b...")
 
 
(2 intermediate revisions by 2 users not shown)
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{{JaponicaGene|
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The rice '''''Os02g0202400''''' was reported as '''''OsBT1''''' in 2016 <ref name="ref1" /> by researchers from India and Japan.  
GeneName = Os02g0202400|
 
Description = Similar to Plastidial ADP-glucose transporter|
 
Version = NM_001052765.1 GI:115444900 GeneID:4328656|
 
Length = 2185 bp|
 
Definition = Oryza sativa Japonica Group Os02g0202400, complete gene.|
 
Source = Oryza sativa Japonica Group
 
  
  ORGANISM  Oryza sativa Japonica Group
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==Annotated Information==
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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===Gene Symbol===
            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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*'''''Os02g0202400''''' '''''<=>''''' '''''OsBT1''''' '''''BT1'''''
            clade; Ehrhartoideae; Oryzeae; Oryza.
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===Function===
|
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*Major ADPglc transporter by studying the shrunken3 locus of the EM1093 rice line, which harbors a mutation in the '''''BRITTLE1(BT1)''''' adenylate transporter(OsBt1) gene.
Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|
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AP = Chromosome 2:5736608..5738792|
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===Phenotypic analysis===
CDS = 5736778..5737372,5737449..5737612,5737986..5738504|
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*ADPglc transport assays indicated that transgenic lines expressing ZmBT1 alone or combined with GlgC exhibited higher rates of transport (approximately 2-fold), with the GlgC (CS8) and GlgC/ZmBT1 (CS8/AT5) lines showing elevated ADPglc levels in amyloplasts.
GCID = <gbrowseImage1>
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name=NC_008395:5736608..5738792
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source=RiceChromosome02
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You can also add sub-section(s) at will.
preset=GeneLocation
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</gbrowseImage1>|
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==Labs working on this gene==
GSID = <gbrowseImage2>
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*Institute of Biological Chemistry, Washington State University, Pullman, Washington 99164 (B.C., A.T., S.-K.H.,T.W.O.); Faculty of Agriculture, Kyushu University, Fukuoka 812–8581, Japan (S.Sh., H.M., R.S., H.S.);
name=NC_008395:5736608..5738792
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*Department of Agricultural Biotechnology, Assam Agricultural University, Jorhat–785013, Assam, India (S.Si.);
source=RiceChromosome02
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*Department of Biological Production, Akita Prefectural University, Akita City, Akita 010–01195, Japan(N.C., Y.H., N.F.)
preset=GeneLocation
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</gbrowseImage2>|
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CDNA = <cdnaseq>atggcggcgatgatggcggtgacgacgatggtgacgaggaacaacgccgtcggcggcggcgcggtggcggtggtggacaggaaggggtggttcgtcccggaggtgtcgttcccgtggagctcggtggaaggggagtgcatcaacagcagcagcaagaggttggagttccctcgccggacggctgcgccgccgctgttcgccagcgtcgggctcagcttgccgtctgcggcgaagggccgggacaactgcgacgtcgcgcggcagctcgccgccgcggaggccgaggaggcggcggggaagaagaggcagggcaggaagatgaagggcggcggcgggctgctgtcgctgaggaaggtgagggtgaagatcgggaacccgcaccttcgccggctggtgagcggcgccatcgccggcgccgtgtcgcgcaccttcgtggcgccgctggagaccatccgcacccacctcatggtcggcagctgcggcgccggctccatggccgaggtcttccgctggatcatgcgcaccgagggctggaccggcctcttccgcggcaacgccgtcaacgtcctccgcgtcgcccccagcaaggccatcgagcatttcacctacgacacggccaagaagtacctcaccccggaggacggcgagcctgccaagatccccatccccgtccccctcgtcgccggcgccctcgccggtgtcgcctccaccctctgcacctaccccatggagctcgtcaagacccgcctcaccatcgagaaggacgtgtacgacaacgtgctgcacgcgttcgtgaagatcgtgcgggagggcgggccgggggagctgtaccgcggcctggcgccgagcctgatcggcgtggtgccctacgcggccaccaacttctacgcctacgagacgctgcgccgcctgtaccgccgcgccacggggcgcgccgacgtcggcccggccgcgacgctgctcatcgggtcggcggcgggcgccatcgccagcacggccaccttcccgctcgaggtcgcccgcaagcagatgcaggtcggcgccgtcggcggccggcaggtgtaccgccacgtgctccacgccatgtactgcatcctccgcggcgagggcgccgcgggcctctaccgcggcctcggccccagctgcatcaagctcatgcccgccgccggcatctccttcatgtgctacgaggcgctcaagaaggtactcgtcgaggaggaggcggcgccggagctggaggcggagtgcgcggaggagatcaaggagaaggttgcgtga</cdnaseq>|
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==References==
AA = <aaseq>MAAMMAVTTMVTRNNAVGGGAVAVVDRKGWFVPEVSFPWSSVEG                    ECINSSSKRLEFPRRTAAPPLFASVGLSLPSAAKGRDNCDVARQLAAAEAEEAAGKKR                    QGRKMKGGGGLLSLRKVRVKIGNPHLRRLVSGAIAGAVSRTFVAPLETIRTHLMVGSC                    GAGSMAEVFRWIMRTEGWTGLFRGNAVNVLRVAPSKAIEHFTYDTAKKYLTPEDGEPA                    KIPIPVPLVAGALAGVASTLCTYPMELVKTRLTIEKDVYDNVLHAFVKIVREGGPGEL                    YRGLAPSLIGVVPYAATNFYAYETLRRLYRRATGRADVGPAATLLIGSAAGAIASTAT                    FPLEVARKQMQVGAVGGRQVYRHVLHAMYCILRGEGAAGLYRGLGPSCIKLMPAAGIS                    FMCYEALKKVLVEEEAAPELEAECAEEIKEKVA</aaseq>|
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<references>
DNA = <dnaseqindica>171..765#842..1005#1379..1897#acaccagccaggaatcagaagccagaagcagcaacgctcgctctgattctttctttcctcctcgagctaggtgcgtagttgtcatatttgatcgatcggttttagttcttcttgtttaattttgattgcgcttgtagcagcaggaagtagttttaattttggtgtgatcgatggcggcgatgatggcggtgacgacgatggtgacgaggaacaacgccgtcggcggcggcgcggtggcggtggtggacaggaaggggtggttcgtcccggaggtgtcgttcccgtggagctcggtggaaggggagtgcatcaacagcagcagcaagaggttggagttccctcgccggacggctgcgccgccgctgttcgccagcgtcgggctcagcttgccgtctgcggcgaagggccgggacaactgcgacgtcgcgcggcagctcgccgccgcggaggccgaggaggcggcggggaagaagaggcagggcaggaagatgaagggcggcggcgggctgctgtcgctgaggaaggtgagggtgaagatcgggaacccgcaccttcgccggctggtgagcggcgccatcgccggcgccgtgtcgcgcaccttcgtggcgccgctggagaccatccgcacccacctcatggtcggcagctgcggcgccggctccatggccgaggtcttccgctggatcatgcgcaccgagggctggaccggcctcttccgcggcaacgccgtcaacgtcctccgcgtcgcccccagcaaggccatcgaggcaaccaactcaacctcacaccctccactttgtttttctttgaatttctcgtgatcgaatccatggcgtcctgcagcatttcacctacgacacggccaagaagtacctcaccccggaggacggcgagcctgccaagatccccatccccgtccccctcgtcgccggcgccctcgccggtgtcgcctccaccctctgcacctaccccatggagctcgtcaagacccgcctcaccatcgaggtaaacacaaacacacacaaacccccatcaaaaccttcaaaatcgatcaaactaatcacgaaagtggatttttttccccctccagatgacatcccctagttttgtgtatgcgattcaatacatgatatatcttttgcaaatatgcaagttaaaattcaacttatacaattcgaaacaaaaataacaaatttgacccataaattacgcgttctactcgtacaagttaaatttaaatttgcatgtttgtgaagtgacatatctctattctactaaaattttttaatgatcttttaagtgacatgtaaaaatgaggagatatcccaaattgagttttccaactaatcaccaccgccattgttgcgttttcttgcagaaggacgtgtacgacaacgtgctgcacgcgttcgtgaagatcgtgcgggagggcgggccgggggagctgtaccgcggcctggcgccgagcctgatcggcgtggtgccctacgcggccaccaacttctacgcctacgagacgctgcgccgcctgtaccgccgcgccacggggcgcgccgacgtcggcccggccgcgacgctgctcatcgggtcggcggcgggcgccatcgccagcacggccaccttcccgctcgaggtcgcccgcaagcagatgcaggtcggcgccgtcggcggccggcaggtgtaccgccacgtgctccacgccatgtactgcatcctccgcggcgagggcgccgcgggcctctaccgcggcctcggccccagctgcatcaagctcatgcccgccgccggcatctccttcatgtgctacgaggcgctcaagaaggtactcgtcgaggaggaggcggcgccggagctggaggcggagtgcgcggaggagatcaaggagaaggttgcgtgaagtggtttgggctcgccggcgccggagaagatggtggctgattgtgcatgggtgtgatgatggaagcatgcaagaaaagaagaaaaaaaagaagcaaaaaatggagagaagtttgtggttgctgtggtttgaagttggatgaatcatcgtaggattcgatttcctctgttcaggaggcatatggtgtgttttcaatgaagtgatgcatttcaagtttgttttcaatatatctatgtattgcatttcaagtttgttttcaataaaatctatgtatttccagttcaattt</dnaseqindica>|
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* <ref name="ref1">
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001052765.1 RefSeq:Os02g0202400]|
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Cakir B, Shiraishi S, Tuncel A, Matsusaka H, Satoh R, Singh S, Crofts N, Hosaka Y, Fujita N, Hwang SK, Satoh H, Okita TW. Analysis of the Rice ADP-Glucose Transporter (OsBT1) Indicates the Presence of Regulatory Processes in the Amyloplast Stroma That Control ADP-Glucose Flux into Starch. Plant Physiol. 2016 Mar;170(3):1271-83. doi: 10.1104/pp.15.01911. Epub 2016 Jan 11. PubMed PMID:26754668; PubMed Central PMCID: PMC4775147.
}}
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</ref>
[[Category:Genes]]
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</references>
[[Category:Japonica mRNA]]
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[[Category:Oryza Sativa Japonica Group]]
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==Structured Information==
[[Category:Japonica Genes]]
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    [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 2]]
[[Category:Japonica Chromosome 2]]
 
[[Category:Chromosome 2]]
 

Latest revision as of 08:50, 27 May 2017

The rice Os02g0202400 was reported as OsBT1 in 2016 [1] by researchers from India and Japan.

Annotated Information

Gene Symbol

  • Os02g0202400 <=> OsBT1 BT1

Function

  • Major ADPglc transporter by studying the shrunken3 locus of the EM1093 rice line, which harbors a mutation in the BRITTLE1(BT1) adenylate transporter(OsBt1) gene.

Phenotypic analysis

  • ADPglc transport assays indicated that transgenic lines expressing ZmBT1 alone or combined with GlgC exhibited higher rates of transport (approximately 2-fold), with the GlgC (CS8) and GlgC/ZmBT1 (CS8/AT5) lines showing elevated ADPglc levels in amyloplasts.


You can also add sub-section(s) at will.

Labs working on this gene

  • Institute of Biological Chemistry, Washington State University, Pullman, Washington 99164 (B.C., A.T., S.-K.H.,T.W.O.); Faculty of Agriculture, Kyushu University, Fukuoka 812–8581, Japan (S.Sh., H.M., R.S., H.S.);
  • Department of Agricultural Biotechnology, Assam Agricultural University, Jorhat–785013, Assam, India (S.Si.);
  • Department of Biological Production, Akita Prefectural University, Akita City, Akita 010–01195, Japan(N.C., Y.H., N.F.)


References

  1. Cakir B, Shiraishi S, Tuncel A, Matsusaka H, Satoh R, Singh S, Crofts N, Hosaka Y, Fujita N, Hwang SK, Satoh H, Okita TW. Analysis of the Rice ADP-Glucose Transporter (OsBT1) Indicates the Presence of Regulatory Processes in the Amyloplast Stroma That Control ADP-Glucose Flux into Starch. Plant Physiol. 2016 Mar;170(3):1271-83. doi: 10.1104/pp.15.01911. Epub 2016 Jan 11. PubMed PMID:26754668; PubMed Central PMCID: PMC4775147.

Structured Information