Difference between revisions of "Os11g0167800"

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(Created page with "{{JaponicaGene| GeneName = Os11g0167800| Description = Similar to Anth (Pollen-specific desiccation-associated LLA23 protein)| Version = NM_001072373.1 GI:115484358 GeneID:...")
 
 
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{{JaponicaGene|
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The rice '''''Os11g0167800''''' was reported as '''''ASR5''''' in 2016 <ref name="ref1" /> by researchers from Brazil and USA.
GeneName = Os11g0167800|
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Description = Similar to Anth (Pollen-specific desiccation-associated LLA23 protein)|
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==Annotated Information==
Version = NM_001072373.1 GI:115484358 GeneID:4349876|
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===Gene Symbol===
Length = 969 bp|
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*'''''Os11g0167800''''' '''''<=>''''' '''''ASR5'''''
Definition = Oryza sativa Japonica Group Os11g0167800, complete gene.|
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===Function===
Source = Oryza sativa Japonica Group
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*'''''ASR5''''' act in concert andcomplementarily to regulate gene expression in response to Al.
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===Phenotypic analysis===
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*Plants with artificial microRNA silencing of ''''''ASR5''''' present a non-transformed phenotype in response to Al because of the induction of ASR1.
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You can also add sub-section(s) at will.
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==Labs working on this gene==
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* Programa de Pós-Graduação em Genética e Biologia Molecular – Departamento de Genética, Universidade Federal do Rio Grandedo Sul, Porto Alegre, Brazil
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*Centro de Biotecnologia, Universidade Federal do Rio Grande do Sul, Porto Alegre, Brazil
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*Department of Plant Biology, Carnegie Institution for Science, Stanford, CA 94305, USA
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==References==
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<references>
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* <ref name="ref1">
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Arenhart RA, Schunemann M, Bucker Neto L, Margis R, Wang ZY, Margis-Pinheiro M. Rice ASR1 and ASR5 are complementary transcription factors regulating aluminium responsive genes. Plant Cell Environ. 2016 Mar;39(3):645-51. doi:10.1111/pce.12655. Epub 2015 Dec 14. PubMed PMID: 26476017.
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</ref>
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</references>
  
  ORGANISM  Oryza sativa Japonica Group
 
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
 
            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
 
            clade; Ehrhartoideae; Oryzeae; Oryza.
 
|
 
Chromosome = [[:category:Japonica Chromosome 11|Chromosome 11]]|
 
AP = Chromosome 11:3261662..3262630|
 
CDS = 3262004..3262189,3262309..3262539|
 
GCID = <gbrowseImage1>
 
name=NC_008404:3261662..3262630
 
source=RiceChromosome11
 
preset=GeneLocation
 
</gbrowseImage1>|
 
GSID = <gbrowseImage2>
 
name=NC_008404:3261662..3262630
 
source=RiceChromosome11
 
preset=GeneLocation
 
</gbrowseImage2>|
 
CDNA = <cdnaseq>atggcggaggagaagcaccaccaccacctgttccaccacaagaaggacgacgagccggccaccggagtagactcctacggcgagggcgtctacacgtcggagacggtgaccaccgaggtggtcgccggcggccaggacgagtacgagaggtacaagaaggaggagaagcagcacaagcacaagcagcacctcggcgaggccggcgccctcgccgccggcgccttcgccctgtatgagaagcacgaggcgaagaaggacccggagaacgcgcacaggcacaagatcacggaggagatcgcggccacggcggcggtcggcgccggcggctacgccttccacgagcaccacgagaagaagaaggaccacaagagcgccgaggagtccaccggcgagaagaagcaccacctcttcggctga</cdnaseq>|
 
AA = <aaseq>MAEEKHHHHLFHHKKDDEPATGVDSYGEGVYTSETVTTEVVAGG                    QDEYERYKKEEKQHKHKQHLGEAGALAAGAFALYEKHEAKKDPENAHRHKITEEIAAT                    AAVGAGGYAFHEHHEKKKDHKSAEESTGEKKHHLFG</aaseq>|
 
DNA = <dnaseqindica>442..627#92..322#aagcaagcaaagccacatcttattgtcacttccatctcattctcctaattgtcatcactagcttctagctagcttaattaattaattagccatggcggaggagaagcaccaccaccacctgttccaccacaagaaggacgacgagccggccaccggagtagactcctacggcgagggcgtctacacgtcggagacggtgaccaccgaggtggtcgccggcggccaggacgagtacgagaggtacaagaaggaggagaagcagcacaagcacaagcagcacctcggcgaggccggcgccctcgccgccggcgccttcgccctggtaattaactaattaattaaccactaattaattgatctaacgccgccttaattaatcaattaatttgctaagaaatcatcaagaagtaattaattaagctgattaatcgtggtgtgtagtatgagaagcacgaggcgaagaaggacccggagaacgcgcacaggcacaagatcacggaggagatcgcggccacggcggcggtcggcgccggcggctacgccttccacgagcaccacgagaagaagaaggaccacaagagcgccgaggagtccaccggcgagaagaagcaccacctcttcggctgatcgacctcatcacaacgtcgccggcggcggcgacgacctcgccgtacgtcgccggccgccgtgtcgtcgatttgtgtgtgtaataatttgtcttcttctgcatgcgtggtgttgctgtttttcacaagagtctccggcctcgaccagtgagaggctgacaggtggggccgtgagttcagcttgtgttgcttgattttctctgcagccttgccctctgtgtgtccaaataagtggtgtgcatggctctctccgtgtcatgtatcaatgtatttttatctgtactttgtacaagtgaagcaatatttatcgaaccttgactttctccattctatttgaaaaacc</dnaseqindica>|
 
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001072373.1 RefSeq:Os11g0167800]|
 
}}
 
 
[[Category:Genes]]
 
[[Category:Genes]]
 
[[Category:Japonica mRNA]]
 
[[Category:Japonica mRNA]]
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[[Category:Japonica Chromosome 11]]
 
[[Category:Japonica Chromosome 11]]
 
[[Category:Chromosome 11]]
 
[[Category:Chromosome 11]]
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==Structured Information==

Latest revision as of 02:53, 2 June 2017

The rice Os11g0167800 was reported as ASR5 in 2016 [1] by researchers from Brazil and USA.

Annotated Information

Gene Symbol

  • Os11g0167800 <=> ASR5

Function

  • ASR5 act in concert andcomplementarily to regulate gene expression in response to Al.

Phenotypic analysis

  • Plants with artificial microRNA silencing of 'ASR5 present a non-transformed phenotype in response to Al because of the induction of ASR1.


You can also add sub-section(s) at will.

Labs working on this gene

  • Programa de Pós-Graduação em Genética e Biologia Molecular – Departamento de Genética, Universidade Federal do Rio Grandedo Sul, Porto Alegre, Brazil
  • Centro de Biotecnologia, Universidade Federal do Rio Grande do Sul, Porto Alegre, Brazil
  • Department of Plant Biology, Carnegie Institution for Science, Stanford, CA 94305, USA

References

  1. Arenhart RA, Schunemann M, Bucker Neto L, Margis R, Wang ZY, Margis-Pinheiro M. Rice ASR1 and ASR5 are complementary transcription factors regulating aluminium responsive genes. Plant Cell Environ. 2016 Mar;39(3):645-51. doi:10.1111/pce.12655. Epub 2015 Dec 14. PubMed PMID: 26476017.

Structured Information