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| − | Please input one-sentence summary here.
| + | The rice '''''Os07g0163500''''' was reported as '''''OsValRS2''''' in 2016 <ref name="ref1" /> by researchers from China and Pennsylvania. |
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| | ==Annotated Information== | | ==Annotated Information== |
| | + | ===Gene Symbol=== |
| | + | *'''''Os07g0163500''''' '''''<=>''''' '''''OsValRS2''''' '''''ValRS2''''' |
| | ===Function=== | | ===Function=== |
| − | Please input function information here.
| + | *'''''OsValRS2''''' plays an essential role in chloroplast development and regulating chloroplast ribosome biogenesis. |
| | + | ===Phenotypic analysis=== |
| | + | *A single base change in '''''OsValRS2''''' caused virescent to albino phenotypes in seedlings and white panicles at heading. |
| | | | |
| − | ===Expression===
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| − | Please input expression information here.
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| − |
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| − | ===Evolution===
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| − | Please input evolution information here.
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| | You can also add sub-section(s) at will. | | You can also add sub-section(s) at will. |
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| | ==Labs working on this gene== | | ==Labs working on this gene== |
| − | Please input related labs here.
| + | *State Key Laboratory for Crop Genetics and Germplasm Enhancement, Jiangsu Plant Gene Engineering Research Center, Nanjing Agricultural University, Nanjing 210095, PR China |
| | + | *National Key Facility for Crop Resources and Genetic Improvement, Institute of Crop Science, Chinese Academy of Agricultural Sciences, |
| | + | Beijing 100081, PR China |
| | + | *Department of Biology, Wilkes University, Wilkes-Barre, Pennsylvania 18766 |
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| | ==References== | | ==References== |
| − | Please input cited references here.
| + | <references> |
| | + | * <ref name="ref1"> |
| | + | Wang Y, Wang C, Zheng M, Lyu J, Xu Y, Li X, Niu M, Long W, Wang D, Wang H, Terzaghi W, Wang Y, Wan J. WHITE PANICLE1, a Val-tRNA Synthetase Regulating Chloroplast Ribosome Biogenesis in Rice, Is Essential for Early Chloroplast Development. Plant Physiol. 2016 Apr;170(4):2110-23. doi: 10.1104/pp.15.01949. Epub 2016 Feb 2. PubMed PMID: 26839129; PubMed Central PMCID: PMC4825129. |
| | + | </ref> |
| | + | </references> |
| | | | |
| | ==Structured Information== | | ==Structured Information== |
| − | {{JaponicaGene|
| + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 7]] |
| − | GeneName = Os07g0163500|
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| − | Description = Aminoacyl-tRNA synthetase, class 1a, anticodon-binding domain containing protein|
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| − | Version = NM_001065488.1 GI:115470708 GeneID:4342467|
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| − | Length = 3690 bp|
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| − | Definition = Oryza sativa Japonica Group Os07g0163500, complete gene.|
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| − | Source = Oryza sativa Japonica Group
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| − | | |
| − | ORGANISM Oryza sativa Japonica Group
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| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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| − | clade; Ehrhartoideae; Oryzeae; Oryza.
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| − | |
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| − | Chromosome = [[:category:Japonica Chromosome 7|Chromosome 7]]|
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| − | AP = Chromosome 7:3428639..3432328|
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| − | CDS = 3428639..3428716,3428808..3428858,3428938..3429050,3430582..3430729,3430826..3430930<br>,3431017..3431118,3431495..3431567,3431647..3431813,3431906..3432028<br>|
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| − | GCID = <gbrowseImage1>
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| − | name=NC_008400:3428639..3432328
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| − | source=RiceChromosome07
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| − | preset=GeneLocation
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| − | </gbrowseImage1>|
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| − | GSID = <gbrowseImage2>
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| − | name=NC_008400:3428639..3432328
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| − | source=RiceChromosome07
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| − | preset=GeneLocation
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| − | </gbrowseImage2>|
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| − | CDNA = <cdnaseq>aatgcaggcaaatttttgttgcagaatttgcctgatagaagtgatgccactgcatgggatgtcttgttagcaaataagtttgatacagaagcgtcacttcagaaactaccactgccagaatcctgggtggtgacaggattacacgaactcatcgatagggtcagcacaagctacgacaaatttttctttggcgatgcagctagagaaatctacgatttcttttggggggactttgctgattggtatattgaagccagcaagacacgtctttaccactctggtgatgattcagcttcttctatggcacaaagtgttctgttgtatgtgtttgaaaacatactgaagctattgcaccccttcatgccctttgtcactgaagagttatggcaggcattgccatacagaaaacaagcaattattgttgcccactggcctgcgactgatctccctaagaattctctctcgatcaagagatttcagaatttgcaatcgttgataagaggtatcagaaatgttcgagcagagtattctgttgagccagccaagcgaatatcttcatcagttgttgctgccgcagatgtcctagattacatatcgaaggagaagcaggtcctggctttactttcaaagcttgacatgcagagtatacattttagcgagttgccgccaggtgatgcaaatcagtcggtccacattgttgctgatgagggtctggaggcctatctacccctggctgacatggtggatgtttctgaggaagttaagcggctgtcaaagcgcctctctaagatgcagtcggaatatgattctttgctggcccgtctcaattcaggaagttttgtagagaaggccccagaagaaattgttcgtggagttcgtgagaaagcatcagaagcagaagagaagatctccctcaccaagaatcggctcgctttcctgcagtcaacagtatcaagttag</cdnaseq>|
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| − | AA = <aaseq>NAGKFLLQNLPDRSDATAWDVLLANKFDTEASLQKLPLPESWVV TGLHELIDRVSTSYDKFFFGDAAREIYDFFWGDFADWYIEASKTRLYHSGDDSASSMA QSVLLYVFENILKLLHPFMPFVTEELWQALPYRKQAIIVAHWPATDLPKNSLSIKRFQ NLQSLIRGIRNVRAEYSVEPAKRISSSVVAAADVLDYISKEKQVLALLSKLDMQSIHF SELPPGDANQSVHIVADEGLEAYLPLADMVDVSEEVKRLSKRLSKMQSEYDSLLARLN SGSFVEKAPEEIVRGVREKASEAEEKISLTKNRLAFLQSTVSS</aaseq>|
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| − | DNA = <dnaseqindica>1..78#170..220#300..412#1944..2091#2188..2292#2379..2480#2857..2929#3009..3175#3268..3390#aatgcaggcaaatttttgttgcagaatttgcctgatagaagtgatgccactgcatgggatgtcttgttagcaaataaggtatctgattgaatttcgaattgcacttgatgcattgacataatttagttctttttagaactgttgctaacaccttgcatctattgcccagtttgatacagaagcgtcacttcagaaactaccactgccagaatcctgggtggtgagtcagagtacattactatctcgaattatttgattaatgttcagtttgttaatgaagagaatacactacgatccaggtgacaggattacacgaactcatcgatagggtcagcacaagctacgacaaatttttctttggcgatgcagctagagaaatctacgatttcttttggggggactttgctgattggtaagattttttttattacctaagaatatgaggccaggccttttcattaagagcacattaatatttctgcctcaattaatctggagactatcagccctattgacaatgtaaggagacacagggggcctgagtaaccaagtgtacaacttatcatatttggtagacctgcccaccatgcagaacaaagaatttcctatttgagcccttttttatgtttcctttaatttacatagtcctgtttgtctaaattctgattgcagcccttcccattgatgggaagaaatatgctagttgtatgggattaaaagaactaaaatccttttatgtgcttaacttttgtctggttttcttaatctgagcttatatccaaatggtaaagaactgtcaagagctttagtggaaagctgaggtctttcttaacaatggagattccatgagcaatttttctaaaagaaaatgaaactaaaacatatcacaatgttagacgccatgagccccagctagatcccaaaactcccaaaactgtccctcttccttggcaagcagaaaagcacctgccaggtttgagggtagcaccataaaggacacaacaattaggatgcttccagggagtccaaacaccaagaatgttaaggacttaaggccttgctgcaccaggccattaagtgcatcgctagctcagctccactcgtcaaggactgattccccagcgatggcgacagggcagggaggccaacctgctgcaggagactcaaccaaaatcgtctaacagaaactcatgtagtgagcaggtgatggatagtctcaacgtcctgatcacaatgaagacaacaaggagggtgcggcagcctcacctagtgaagtgatctgcagtccagcaccaattgtgcacaaccaaagaaagtagtgtcacatttacctggggcccatgatttccaagtatgctcccatggctgaaatcggacagcaccctccaaaagaaaaataaaggacaacaccttggaggcttggaagaaattgtcatgtgcagatttggccaactattaccccaaagctgatagccgccaacggtgaatgtcttccacacccggctgcaacacagacctcagataaaagatcctataatcagagatctgggtattctcaagggcgccaacagaggttgcaccttgtatatccaggatccatctgtattcctttaggtcctcaagaaccgtgcgcctgttggttgtttttgtaggaaccagagcaaacagtttaggggcaaggtcagcgatccgctgcccatgtagcctcctatctttccagaacaaggtgtgcgcaccattgctgacctcaatctcaactgctatggaaaagaaagcatggacatcatcatgcatttgaattggtaatgccgactatggcctatcaggctcctgtttttgcagccacagccagcatatcctgagggcccaaccatgatgcatcatgcattgtttttagtatatttttgtgtgtcatccagtcaaccaaattagttctcttgcaggtatattgaagccagcaagacacgtctttaccactctggtgatgattcagcttcttctatggcacaaagtgttctgttgtatgtgtttgaaaacatactgaagctattgcaccccttcatgccctttgtcactgaagagttatggcaggtagtgaaacctaaccgtaaattattattccctgcaatgtagtatatcacttttaccttcaccattaatagcatatcattatcgttcttatttcaggcattgccatacagaaaacaagcaattattgttgcccactggcctgcgactgatctccctaagaattctctctcgatcaagagatttcagaatttgcaatcgttggtaaatctttgacttgagctgctcatactttaagtggtgacattgcctgtggtgaccattttgttccattgtaaatgtgataacagataagaggtatcagaaatgttcgagcagagtattctgttgagccagccaagcgaatatcttcatcagttgttgctgccgcagatgtcctagattacatatcggtgagcattttcttacattacgggtttttctttgtggcatttcatcgtatatatattgtatgaccttttttatctattaatctgagaatcaacttaatgcacatgcatgtttattaccaagaacggtaagtattattattctttttatcttgttgcaatactcgagttaaagcttttcattgctagaaaacaaagcatatgcatagttattagatgtgcaagtttcactattggaacatagaggtgcatgtgtgatactgtcttgccttttcagctctaacttccctgcgtcttgacattatgaaaaccctttatttgttttgtgaaaaaaccctttatttgttcagcatcatgatctgtactttgatgcctgcagaaggagaagcaggtcctggctttactttcaaagcttgacatgcagagtatacattttagcgagttgccgccaggtgtgtgcctataacttgtcaacataatcttccttgatgcacttggccaatataaatcatctacttctgttgctggcaggtgatgcaaatcagtcggtccacattgttgctgatgagggtctggaggcctatctacccctggctgacatggtggatgtttctgaggaagttaagcggctgtcaaagcgcctctctaagatgcagtcggaatatgattctttgctggcccgtctcaattcaggaagtgtacgcatatatttcatcttcatgacaactatattatccctttgaaaccaatttctgtatccttttaaccatgcatttctttcgtgctgtagtttgtagagaaggccccagaagaaattgttcgtggagttcgtgagaaagcatcagaagcagaagagaagatctccctcaccaagaatcggctcgctttcctgcagtcaacagtatcaagttagattcagcagtcaccattgacggtgtcaacctgccatctaaataacaattttgattagtcctgatttggacgagagatgccacttccggatataaattggcgtgtcagagtagtgagtgccattccattttcgcgtgtgcaggacattgcaactggtgcacgcatcttaccgataagttctactatataacactcatttatacgtctactaggtatgcctgtacgcctgtgcgttgtaacgggacaatagttgtacatacataaacaatacataaacaatgaatggaataaacagttgcac</dnaseqindica>|
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| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001065488.1 RefSeq:Os07g0163500]|
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| − | }}
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| − | [[Category:Genes]] | |
| − | [[Category:Japonica mRNA]]
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| − | [[Category:Oryza Sativa Japonica Group]] | |
| − | [[Category:Japonica Genes]] | |
| − | [[Category:Japonica Chromosome 7]]
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| − | [[Category:Chromosome 7]]
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