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| − | {{JaponicaGene|
| + | The rice '''''Os06g0487900''''' was reported as '''''OsOTS1''''' in 2016 <ref name="ref1" /> by researchers from United Kingdom. |
| − | GeneName = Os06g0487900|
| |
| − | Description = Peptidase C48, SUMO/Sentrin/Ubl1 family protein|
| |
| − | Version = NM_001064204.1 GI:115468139 GeneID:4341072|
| |
| − | Length = 12736 bp|
| |
| − | Definition = Oryza sativa Japonica Group Os06g0487900, complete gene.|
| |
| − | Source = Oryza sativa Japonica Group
| |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| + | |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | ==Annotated Information== |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| + | *'''''Os06g0487900''''' '''''<=>''''' '''''OsOTS1''''' '''''OTS1''''' |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| + | ===Function=== |
| − | |
| + | *'''''OsOTS1''''' is nuclear localized indicating a direct requirement of OsOTS1-dependent deSUMOylation activity in rice nuclei for salt tolerance. |
| − | Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|
| + | |
| − | AP = Chromosome 6:17609929..17622664|
| + | ===Phenotypic analysis=== |
| − | CDS = 17610477..17610695,17610816..17610926,17613214..17613328,17613652..17613774,17613967..17614061<br>,17615063..17615162,17616316..17616411,17616498..17616527,17617423..17617496<br>,17619728..17619776,17620561..17620799,17620868..17620926,17621780..17621831<br>,17622346..17622552|
| + | *'''''OsOTS'''''-RNAi rice plants accumulate high levels of SUMOconjugated proteins during salt stress and are highly salt sensitive; however, in non-salt conditions, they are developmentally indistinguishable from wild-type plants. |
| − | GCID = <gbrowseImage1>
| + | *Transgenic rice plants overexpressing '''''OsOTS1''''' have increased salt tolerance and a concomitant reduction in the levels of SUMOylated proteins. |
| − | name=NC_008399:17609929..17622664
| + | |
| − | source=RiceChromosome06
| + | |
| − | preset=GeneLocation
| + | You can also add sub-section(s) at will. |
| − | </gbrowseImage1>|
| + | |
| − | GSID = <gbrowseImage2>
| + | ==Labs working on this gene== |
| − | name=NC_008399:17609929..17622664
| + | *School of Biological and Biomedical Sciences, University of Durham, Durham DH1 3LE, United Kingdom |
| − | source=RiceChromosome06
| + | |
| − | preset=GeneLocation
| + | ==References== |
| − | </gbrowseImage2>| | + | <references> |
| − | CDNA = <cdnaseq>atggccggcggcgaggacggggccgacggcgtcggagatgacaccgagcttcgcaggttctcagacgtggagctgctggagaagtcgcggcgcattcagggggagctcagtgggggtatcgagcgaaggctcaaggaccgcggggccaagtttcgccgcttgctagacgccatcgtccgcgagattgatcgccgtaaggcagcaacggatgatgacagatgcgcaagggtagttcaatcgggatgtgcagaatcatcagttaaacaacaagcagtaaccatatcagattttcggtcctcctttgggatagatgaagaggcaggcgttgatgtatctcatttggaaacaagtgcatgcattggcgacccaaaaacttcaacagataatgaggggatcttgtgtgaagaggaagattcctgtaagtgtaaaccctctacgtctcaaaaggcatcatatgttgataggtcaacttatatggaaaatatagatgctgctgatgatggcaaggataatggctacagtaggatatgcaaagatgcccacacttctaggaaaaggaatggagaattttcacctaccttttcaatgcgattgcgatcaagaaaggtggttgaagaggtggttctactcgatggagatacttgcatttcagactctgcagaaaaaacatcctctgcatgtgatgcaatgaagatacactatccttcatgggacacccctaattctattgagctttcttattctgacatgaagtgtcttgagcctgaatcattgttgtcctcacctatactgaacttctacattatgtacctaatgggacaaatgccatcgacaagtaggcttggaggcaagtatcatattttcaatacatacttcttcagcaaacttgaagccttgacatcaaaggtggacaatgatgcttatttcttgaatctgagaagatggtggaaaggtgtagatatatttaaaaaggcatacataataattcctgtgcatgcagacgcacactggagcttggtcattatatgtatgcctgcaaaggaagaccaatcagggcccaccatatttcatttggattcactgaagtttcatagcagcagatttattttcagcaccgttgagagattccttaaagaagaatggaactacctgaataaaactggttctttagaagattgtcatctacatgaatcagtgtggaagaaccttcctcggaaaattaagaagaaagcagttacagttccacagcaggacaatgaatacgattgtggtgtctttgttctgtactatatgcgacgctttatcgaggaagcacctgaaaggcttaacaacaaggactcatctaatatgtttggcgaagggtggttccaacgtgaagaggcttctgcactgcgaaaggaaatgcaagctctgcttcttcggttgtttgaggaagctaaagacaacaaccacatgagagatccaacaacaccagtgtcagcaacagcggagcaccctgttgaagtcttgtcaaccgagccagcagtaccagaccaccctcggaatgcggttggcgtcgccacctcatag</cdnaseq>|
| + | * <ref name="ref1"> |
| − | AA = <aaseq>MAGGEDGADGVGDDTELRRFSDVELLEKSRRIQGELSGGIERRL KDRGAKFRRLLDAIVREIDRRKAATDDDRCARVVQSGCAESSVKQQAVTISDFRSSFG IDEEAGVDVSHLETSACIGDPKTSTDNEGILCEEEDSCKCKPSTSQKASYVDRSTYME NIDAADDGKDNGYSRICKDAHTSRKRNGEFSPTFSMRLRSRKVVEEVVLLDGDTCISD SAEKTSSACDAMKIHYPSWDTPNSIELSYSDMKCLEPESLLSSPILNFYIMYLMGQMP STSRLGGKYHIFNTYFFSKLEALTSKVDNDAYFLNLRRWWKGVDIFKKAYIIIPVHAD AHWSLVIICMPAKEDQSGPTIFHLDSLKFHSSRFIFSTVERFLKEEWNYLNKTGSLED CHLHESVWKNLPRKIKKKAVTVPQQDNEYDCGVFVLYYMRRFIEEAPERLNNKDSSNM FGEGWFQREEASALRKEMQALLLRLFEEAKDNNHMRDPTTPVSATAEHPVEVLSTEPA VPDHPRNAVGVATS</aaseq>|
| + | Srivastava AK, Zhang C, Yates G, Bailey M, Brown A, Sadanandom A. SUMO Is a Critical Regulator of Salt Stress Responses in Rice. Plant Physiol. 2016 Apr;170(4):2378-91. doi: 10.1104/pp.15.01530. Epub 2016 Feb 11. PubMed PMID: 26869703; PubMed Central PMCID: PMC4825142. |
| − | DNA = 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| + | </ref> |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001064204.1 RefSeq:Os06g0487900]|
| + | </references> |
| − | }}
| + | |
| − | [[Category:Genes]] | + | ==Structured Information== |
| − | [[Category:Japonica mRNA]]
| + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 6]] |
| − | [[Category:Oryza Sativa Japonica Group]] | |
| − | [[Category:Japonica Genes]]
| |
| − | [[Category:Japonica Chromosome 6]] | |
| − | [[Category:Chromosome 6]]
| |
