Difference between revisions of "Os05g0187100"

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(Created page with "{{JaponicaGene| GeneName = Os05g0187100| Description = Similar to Hexokinase| Version = NM_001061370.1 GI:115462470 GeneID:4338010| Length = 3816 bp| Definition = Oryza s...")
 
 
(5 intermediate revisions by 3 users not shown)
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{{JaponicaGene|
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The rice '''''Os05g0187100''''' was reported as '''''OsHXK7''''' in 2015 <ref name="ref1" /> by researchers from Korea.  
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GeneName = Os05g0187100|
 
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Description = Similar to Hexokinase|
 
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Version = NM_001061370.1 GI:115462470 GeneID:4338010|
 
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Length = 3816 bp|
 
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Definition = Oryza sativa Japonica Group Os05g0187100, complete gene.|
 
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Source = Oryza sativa Japonica Group
 
  
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  ORGANISM  Oryza sativa Japonica Group
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==Annotated Information==
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            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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===Gene Symbol===
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            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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*'''''Os05g0187100''''' '''<=>''' '''''OsHXK7''''','''''HXK7'''''
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            clade; Ehrhartoideae; Oryzeae; Oryza.
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|
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===Function===
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Chromosome = [[:category:Japonica Chromosome 5|Chromosome 5]]|
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* OsHXK7 plays in sugar metabolism and efficient germination by enforcing glycolysis-mediated fermentation in O2-deficient rice.
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AP = Chromosome 5:5319388..5323203|
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CDS = 5319911..5320055,5320275..5320405,5320513..5320611,5320716..5320871,5320964..5321038<br>,5321219..5321398,5321539..5321689,5322889..5323076|
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===Phenotypic analysis===
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GCID = <gbrowseImage1>
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* The germination of two null OsHXK7 mutants, oshxk7-1 and oshxk7-2, was affected by O2 deficiency, but overexpression enhanced germination in rice.
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name=NC_008398:5319388..5323203
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source=RiceChromosome05
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===Expression===
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preset=GeneLocation
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* According to transient expression assays that used the promoter:luciferase fusion construct, OsHXK7 enhanced the glucose (Glc)-dependent repression of a rice a-amylase gene (RAmy3D) in the mesophyll protoplasts of maize.
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</gbrowseImage1>|
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* the expression of OsHXK7, but not its catalytically inactive alleles, complemented the Arabidopsis glucose insensitive2-1 (gin2-1) mutant, thereby resulting in the wild type characteristics of Glc-dependent repression,seedling development, and plant growth.
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GSID = <gbrowseImage2>
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* OsHXK7-mediated Glc-dependent repression was abolished in the O2-deficient mesophyll protoplasts of maize.  
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name=NC_008398:5319388..5323203
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source=RiceChromosome05
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preset=GeneLocation
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You can also add sub-section(s) at will.
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</gbrowseImage2>|
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CDNA = <cdnaseq>atggtggcggcggcggtggcggcggcggagcaggtggtggcggcgctgcgggaggagtgcgcgacgccggcggcgcggctggatggggtggcggcggcgatggccggcgagatggcggcggggttggcggaggagggcggcagcaagatcaagatgatcgtttcctacgtcgacaacctccccaatgggaccgaagagggcttgttctacgcgctggatcttgggggaacaaacttccgagtcctgcgtgtgcagcttgctggaaaggagaaacgggtcgtgaagcgcgagtcgagggaggtctcgatccctccccatctcatgtccggcaactcctcggagctgtttggcttcatcgcttccgcgttagccaagttcgtcgctgatgaaggacataatgccgtgttcaacgacaggcaaagggaactggggttcaccttctctttccctgtgcggcaaacatcgattgcgtctgggactcttatcaagtggaccaaggcgttttctattgatgatgctgtaggtgaagatgtggtggccgaattgcagatggccatggagaagcaaggtctggacatgcgcgtttccgcattgatcaatgacactgttgggacattggcggcaggcagctactacgacgaagatattgtcgtcggtgtgatcttaggcactggctcaaacgccgcatatcttgagaaggcaaatgctatccctaagttggaaggcgagttaccaaaatcaggaaacatggttattaatacagaatggggtaacttctcctcatcctgtcttccaataacagaatatgatgaagcactagataaagagagcttaaaccctggagagcagatcttcgagaaattgatttcaggaatgtatctaggtgaaatcgtaaggagagtgcttcttaaaatatctttgcagtcttcaatttttggcaatctagatcagaccaagctcaaaacccgctttattctgaggactcctgatatttccgtgatgcatcatgatggaacacctgatctcagaattgtggctgaaaaacttgcagataacctgaaggtaatcttcatcagtaaatccagcattgaactgtattccctctatccattttatgcacaatga</cdnaseq>|
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==Labs working on this gene==
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AA = <aaseq>MVAAAVAAAEQVVAALREECATPAARLDGVAAAMAGEMAAGLAE                    EGGSKIKMIVSYVDNLPNGTEEGLFYALDLGGTNFRVLRVQLAGKEKRVVKRESREVS                    IPPHLMSGNSSELFGFIASALAKFVADEGHNAVFNDRQRELGFTFSFPVRQTSIASGT                    LIKWTKAFSIDDAVGEDVVAELQMAMEKQGLDMRVSALINDTVGTLAAGSYYDEDIVV                    GVILGTGSNAAYLEKANAIPKLEGELPKSGNMVINTEWGNFSSSCLPITEYDEALDKE                    SLNPGEQIFEKLISGMYLGEIVRRVLLKISLQSSIFGNLDQTKLKTRFILRTPDISVM                    HHDGTPDLRIVAEKLADNLKVIFISKSSIELYSLYPFYAQ</aaseq>|
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* State Key Laboratory of Plant Physiology and Biochemistry, College of Life Sciences, Zhejiang University, Hangzhou, China;
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DNA = <dnaseqindica>3149..3293#2799..2929#2593..2691#2333..2488#2166..2240#1806..1985#1515..1665#128..315#agagacctgtgtacgcgatcttggttagctccggcctttgatcttgaccaccaatctcgcatttcttggatcttctcgtcttcctcactcctcgatcgatccatcgattggttgctggtcggagaccatggtggcggcggcggtggcggcggcggagcaggtggtggcggcgctgcgggaggagtgcgcgacgccggcggcgcggctggatggggtggcggcggcgatggccggcgagatggcggcggggttggcggaggagggcggcagcaagatcaagatgatcgtttcctacgtcgacaacctccccaatgggtaactaattactactagtaattatatttataatcactaataatcacaggtcttgtttccttttaattactgtttcatcatccacttcttcttttagctctctcctacttggaaatttcttagtaattgtgtggttcttggatgccatgaacactttaatatcagcagctacagatgattcggatactctgattgaaaataaaaattggtttgtcaggattaatttgcaagctggtttaatctcctttggttaagtaggtggtggttaattgcatgataatcacatttttagtaggtgttttttctcccaatttggtttcatgtcggttggtaacatgagctatcgttggcttgttgccacctgcagtgagctgccagtgacacagcgtcgtgtgtcggggccaagcaaattgggattagattaaattaaattaaattaatccctagaaggctagaacataatttacctactctttttttttaaaaaaaagaaaaagttaccgcgctcttgcgtgtccatgcgcgtgtcaaattgctcgcactcgtgtcacctgctgcggcagcacgtgtgtgaccccgtgcaacattgcgtgtcagcgtgcgagcgtgtaaccgtgtctagttacagcttgccgatgccaaaaaaaaaaaggcagaaaagttttcttgttaagatcagcagaaaagttttcttttatttgttgcgattagcaggaaattgttttcttgctaagctcgctgccaagacagcataactgcagagcatcaatgcgtgtagtgttactgcatttctgtagatgcaccagctgagacttttcgtttttgtatgattagcggaaaatatcttttgctattctcgttactaaaacaacagaatagtggaacagcaatgtgtgcggtactgtatttctgcataaaaaggtaaaaaaaaagtttccattttttttaaaaaaaaatctgtagtttgcagaaaaaggctttttgtcaagtttgctgccagaatgacataaatgcagaacaacaatgtgtttatcactgcatttctccttttctgttttttttttttttgtgaatagcagaaaagggcttaagcaaagctatctgccaaagcaacaaaatcgcagaacagcaatgtgtgtattactgtatttttcgtgatcagcatgactaacaaccttttgttgtgctaaataatgtaggaccgaagagggcttgttctacgcgctggatcttgggggaacaaacttccgagtcctgcgtgtgcagcttgctggaaaggagaaacgggtcgtgaagcgcgagtcgagggaggtctcgatccctccccatctcatgtccggcaactcctcggtgagtgagcatgtccacacttgtttccatatagtatcataagtttttgggtgaattggctagtatatatcatagtaaaacatcacatttagtctcattggatgaccatgtttgtaatgttgctgtgatgccaatctcaggagctgtttggcttcatcgcttccgcgttagccaagttcgtcgctgatgaaggacataatgccgtgttcaacgacaggcaaagggaactggggttcaccttctctttccctgtgcggcaaacatcgattgcgtctgggactcttatcaagtggaccaaggcgttttctattgatgatgctgtaagaattctcttgatttgtcagttttcccacatcactgcatcagttgttatctaaaaaaacaaattcacaacatcaatgtcacagcgaatctgtttttcacattgttatgtgaaatgctgtcagaattttgtcattggtttctttttctgaaattagtgcttctttggaatatgacaggtaggtgaagatgtggtggccgaattgcagatggccatggagaagcaaggtctggacatgcgcgtttccgcattggttagttctgaaatgatcagttccatatcatttttgaacaaagcgaaatttgttcttatgataagcttgacattattttttgactgtttcagatcaatgacactgttgggacattggcggcaggcagctactacgacgaagatattgtcgtcggtgtgatcttaggcactggctcaaacgccgcatatcttgagaaggcaaatgctatccctaagttggaaggcgagttaccaaaatcaggaaacatggtaaggattagatatttctcaaccgaagtaactggcatgtactgcatagaatcatctactatctgtatttggatttctttctcactgtactttctgaatttcaggttattaatacagaatggggtaacttctcctcatcctgtcttccaataacagaatatgatgaagcactagataaagagagcttaaaccctggagagcaggcaagtttctctagaagattgcatactcctcacatgtcaaaagttttacccacattatatagaactgctacctgttgtctaaaaaaactatgacttgtttttttcagatcttcgagaaattgatttcaggaatgtatctaggtgaaatcgtaaggagagtgcttcttaaaatatctttgcagtcttcaatttttggcaatctagatcagaccaagctcaaaacccgctttattctgaggtatatttctcgctaaactcagttgtgtggtaatcttaatctataagctaggcaaataaagcatgatttgctgagaatatctataggatcacttggagtttcaccattgatccataataattattaggcgcaaaacatatggctttgcaattttccaaaatgagataagcaactttgaaaaaagatgtgctggcttatcctctctctcattatattcaggactcctgatatttccgtgatgcatcatgatggaacacctgatctcagaattgtggctgaaaaacttgcagataacctgaaggtaatcttcatcagtaaatccagcattgaactgtattccctctatccattttatgcacaatgaacacattacacggcattgtccacttttaccacagatcacagacacatccttagaaacaaggaagatggttgtcgaaatctgtgacatcgtcacccgaagatcagcccggctggctgctgctgggatcgtagggatcctcaggaagatcggcagaggcgtcccaggcgacaagcgaaagtcggtcatcgccatcgatggcggtctatatgaacattacaccgaattccggcagtgcctggagaccacgctgacggagttgctcggagaagaggcgtcgaagtcggtggctgtcaagcttgcaaacgacgggtctggccttggagctgccctgattgcagctgctcattctcagtacctgaattgattccccatagacagagttccaacttttattagtgactcagtgctgttgttatagtttatagaatgtggtgaagttctgtatgtttcgaaggagcctgatggactctacaaacaaaattttcagaaatgaaatcgaagccaaatgtgttggtggtgttgc</dnaseqindica>|
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* Department of Biology - Plant Biology, University of Fribourg, Rue Albert-Gockel 3, CH-1700 Fribourg, Switzerland
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Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001061370.1 RefSeq:Os05g0187100]|
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* State Key Laboratory of Plant Genomics, National Center for Plant Gene Research, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.
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}}
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* State Key Laboratory of Rice Biology, China National Rice Research Institute, Chinese Academy of Agricultural Sciences, Hangzhou, China
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[[Category:Genes]]
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* State Key Laboratory of Molecular Developmental Biology, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.
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[[Category:Japonica mRNA]]
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[[Category:Oryza Sativa Japonica Group]]
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==References==
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[[Category:Japonica Genes]]
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<references>
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[[Category:Japonica Chromosome 5]]
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* <ref name="ref1">
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[[Category:Chromosome 5]]
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Kim HB, Cho JI, Ryoo N, Shin DH, Park YI, Hwang YS, Lee SK, An G, Jeon JS.
 +
Role of rice cytosolic hexokinase OsHXK7 in sugar signaling and metabolism. J
 +
Integr Plant Biol. 2016 Feb;58(2):127-35. doi: 10.1111/jipb.12366. Epub 2015 Aug
 +
24. PubMed PMID: 25951042.
 +
 
 +
</ref>
 +
</references>
 +
</ref>
 +
</references>
 +
 
 +
==Structured Information==
 +
    [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 5]]

Latest revision as of 13:40, 16 January 2018

The rice Os05g0187100 was reported as OsHXK7 in 2015 [1] by researchers from Korea.

Annotated Information

Gene Symbol

  • Os05g0187100 <=> OsHXK7,HXK7

Function

  • OsHXK7 plays in sugar metabolism and efficient germination by enforcing glycolysis-mediated fermentation in O2-deficient rice.

Phenotypic analysis

  • The germination of two null OsHXK7 mutants, oshxk7-1 and oshxk7-2, was affected by O2 deficiency, but overexpression enhanced germination in rice.

Expression

  • According to transient expression assays that used the promoter:luciferase fusion construct, OsHXK7 enhanced the glucose (Glc)-dependent repression of a rice a-amylase gene (RAmy3D) in the mesophyll protoplasts of maize.
  • the expression of OsHXK7, but not its catalytically inactive alleles, complemented the Arabidopsis glucose insensitive2-1 (gin2-1) mutant, thereby resulting in the wild type characteristics of Glc-dependent repression,seedling development, and plant growth.
  • OsHXK7-mediated Glc-dependent repression was abolished in the O2-deficient mesophyll protoplasts of maize.


You can also add sub-section(s) at will.

Labs working on this gene

  • State Key Laboratory of Plant Physiology and Biochemistry, College of Life Sciences, Zhejiang University, Hangzhou, China;
  • Department of Biology - Plant Biology, University of Fribourg, Rue Albert-Gockel 3, CH-1700 Fribourg, Switzerland
  • State Key Laboratory of Plant Genomics, National Center for Plant Gene Research, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.
  • State Key Laboratory of Rice Biology, China National Rice Research Institute, Chinese Academy of Agricultural Sciences, Hangzhou, China
  • State Key Laboratory of Molecular Developmental Biology, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.

References

  1. ↑ Kim HB, Cho JI, Ryoo N, Shin DH, Park YI, Hwang YS, Lee SK, An G, Jeon JS. Role of rice cytosolic hexokinase OsHXK7 in sugar signaling and metabolism. J Integr Plant Biol. 2016 Feb;58(2):127-35. doi: 10.1111/jipb.12366. Epub 2015 Aug 24. PubMed PMID: 25951042.

</ref> </references>

Structured Information