Difference between revisions of "Os05g0187100"

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(Created page with "{{JaponicaGene| GeneName = Os05g0187100| Description = Similar to Hexokinase| Version = NM_001061370.1 GI:115462470 GeneID:4338010| Length = 3816 bp| Definition = Oryza s...")
 
 
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{{JaponicaGene|
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The rice '''''Os05g0187100''''' was reported as '''''OsHXK7''''' in 2015 <ref name="ref1" /> by researchers from Korea.  
GeneName = Os05g0187100|
 
Description = Similar to Hexokinase|
 
Version = NM_001061370.1 GI:115462470 GeneID:4338010|
 
Length = 3816 bp|
 
Definition = Oryza sativa Japonica Group Os05g0187100, complete gene.|
 
Source = Oryza sativa Japonica Group
 
  
  ORGANISM  Oryza sativa Japonica Group
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==Annotated Information==
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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===Gene Symbol===
            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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*'''''Os05g0187100''''' '''<=>''' '''''OsHXK7''''','''''HXK7'''''
            clade; Ehrhartoideae; Oryzeae; Oryza.
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|
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===Function===
Chromosome = [[:category:Japonica Chromosome 5|Chromosome 5]]|
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* OsHXK7 plays in sugar metabolism and efficient germination by enforcing glycolysis-mediated fermentation in O2-deficient rice.
AP = Chromosome 5:5319388..5323203|
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CDS = 5319911..5320055,5320275..5320405,5320513..5320611,5320716..5320871,5320964..5321038<br>,5321219..5321398,5321539..5321689,5322889..5323076|
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===Phenotypic analysis===
GCID = <gbrowseImage1>
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* The germination of two null OsHXK7 mutants, oshxk7-1 and oshxk7-2, was affected by O2 deficiency, but overexpression enhanced germination in rice.
name=NC_008398:5319388..5323203
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source=RiceChromosome05
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===Expression===
preset=GeneLocation
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* According to transient expression assays that used the promoter:luciferase fusion construct, OsHXK7 enhanced the glucose (Glc)-dependent repression of a rice a-amylase gene (RAmy3D) in the mesophyll protoplasts of maize.
</gbrowseImage1>|
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* the expression of OsHXK7, but not its catalytically inactive alleles, complemented the Arabidopsis glucose insensitive2-1 (gin2-1) mutant, thereby resulting in the wild type characteristics of Glc-dependent repression,seedling development, and plant growth.
GSID = <gbrowseImage2>
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* OsHXK7-mediated Glc-dependent repression was abolished in the O2-deficient mesophyll protoplasts of maize.  
name=NC_008398:5319388..5323203
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source=RiceChromosome05
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preset=GeneLocation
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You can also add sub-section(s) at will.
</gbrowseImage2>|
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CDNA = <cdnaseq>atggtggcggcggcggtggcggcggcggagcaggtggtggcggcgctgcgggaggagtgcgcgacgccggcggcgcggctggatggggtggcggcggcgatggccggcgagatggcggcggggttggcggaggagggcggcagcaagatcaagatgatcgtttcctacgtcgacaacctccccaatgggaccgaagagggcttgttctacgcgctggatcttgggggaacaaacttccgagtcctgcgtgtgcagcttgctggaaaggagaaacgggtcgtgaagcgcgagtcgagggaggtctcgatccctccccatctcatgtccggcaactcctcggagctgtttggcttcatcgcttccgcgttagccaagttcgtcgctgatgaaggacataatgccgtgttcaacgacaggcaaagggaactggggttcaccttctctttccctgtgcggcaaacatcgattgcgtctgggactcttatcaagtggaccaaggcgttttctattgatgatgctgtaggtgaagatgtggtggccgaattgcagatggccatggagaagcaaggtctggacatgcgcgtttccgcattgatcaatgacactgttgggacattggcggcaggcagctactacgacgaagatattgtcgtcggtgtgatcttaggcactggctcaaacgccgcatatcttgagaaggcaaatgctatccctaagttggaaggcgagttaccaaaatcaggaaacatggttattaatacagaatggggtaacttctcctcatcctgtcttccaataacagaatatgatgaagcactagataaagagagcttaaaccctggagagcagatcttcgagaaattgatttcaggaatgtatctaggtgaaatcgtaaggagagtgcttcttaaaatatctttgcagtcttcaatttttggcaatctagatcagaccaagctcaaaacccgctttattctgaggactcctgatatttccgtgatgcatcatgatggaacacctgatctcagaattgtggctgaaaaacttgcagataacctgaaggtaatcttcatcagtaaatccagcattgaactgtattccctctatccattttatgcacaatga</cdnaseq>|
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==Labs working on this gene==
AA = <aaseq>MVAAAVAAAEQVVAALREECATPAARLDGVAAAMAGEMAAGLAE                    EGGSKIKMIVSYVDNLPNGTEEGLFYALDLGGTNFRVLRVQLAGKEKRVVKRESREVS                    IPPHLMSGNSSELFGFIASALAKFVADEGHNAVFNDRQRELGFTFSFPVRQTSIASGT                    LIKWTKAFSIDDAVGEDVVAELQMAMEKQGLDMRVSALINDTVGTLAAGSYYDEDIVV                    GVILGTGSNAAYLEKANAIPKLEGELPKSGNMVINTEWGNFSSSCLPITEYDEALDKE                    SLNPGEQIFEKLISGMYLGEIVRRVLLKISLQSSIFGNLDQTKLKTRFILRTPDISVM                    HHDGTPDLRIVAEKLADNLKVIFISKSSIELYSLYPFYAQ</aaseq>|
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* State Key Laboratory of Plant Physiology and Biochemistry, College of Life Sciences, Zhejiang University, Hangzhou, China;
DNA = <dnaseqindica>3149..3293#2799..2929#2593..2691#2333..2488#2166..2240#1806..1985#1515..1665#128..315#agagacctgtgtacgcgatcttggttagctccggcctttgatcttgaccaccaatctcgcatttcttggatcttctcgtcttcctcactcctcgatcgatccatcgattggttgctggtcggagaccatggtggcggcggcggtggcggcggcggagcaggtggtggcggcgctgcgggaggagtgcgcgacgccggcggcgcggctggatggggtggcggcggcgatggccggcgagatggcggcggggttggcggaggagggcggcagcaagatcaagatgatcgtttcctacgtcgacaacctccccaatgggtaactaattactactagtaattatatttataatcactaataatcacaggtcttgtttccttttaattactgtttcatcatccacttcttcttttagctctctcctacttggaaatttcttagtaattgtgtggttcttggatgccatgaacactttaatatcagcagctacagatgattcggatactctgattgaaaataaaaattggtttgtcaggattaatttgcaagctggtttaatctcctttggttaagtaggtggtggttaattgcatgataatcacatttttagtaggtgttttttctcccaatttggtttcatgtcggttggtaacatgagctatcgttggcttgttgccacctgcagtgagctgccagtgacacagcgtcgtgtgtcggggccaagcaaattgggattagattaaattaaattaaattaatccctagaaggctagaacataatttacctactctttttttttaaaaaaaagaaaaagttaccgcgctcttgcgtgtccatgcgcgtgtcaaattgctcgcactcgtgtcacctgctgcggcagcacgtgtgtgaccccgtgcaacattgcgtgtcagcgtgcgagcgtgtaaccgtgtctagttacagcttgccgatgccaaaaaaaaaaaggcagaaaagttttcttgttaagatcagcagaaaagttttcttttatttgttgcgattagcaggaaattgttttcttgctaagctcgctgccaagacagcataactgcagagcatcaatgcgtgtagtgttactgcatttctgtagatgcaccagctgagacttttcgtttttgtatgattagcggaaaatatcttttgctattctcgttactaaaacaacagaatagtggaacagcaatgtgtgcggtactgtatttctgcataaaaaggtaaaaaaaaagtttccattttttttaaaaaaaaatctgtagtttgcagaaaaaggctttttgtcaagtttgctgccagaatgacataaatgcagaacaacaatgtgtttatcactgcatttctccttttctgttttttttttttttgtgaatagcagaaaagggcttaagcaaagctatctgccaaagcaacaaaatcgcagaacagcaatgtgtgtattactgtatttttcgtgatcagcatgactaacaaccttttgttgtgctaaataatgtaggaccgaagagggcttgttctacgcgctggatcttgggggaacaaacttccgagtcctgcgtgtgcagcttgctggaaaggagaaacgggtcgtgaagcgcgagtcgagggaggtctcgatccctccccatctcatgtccggcaactcctcggtgagtgagcatgtccacacttgtttccatatagtatcataagtttttgggtgaattggctagtatatatcatagtaaaacatcacatttagtctcattggatgaccatgtttgtaatgttgctgtgatgccaatctcaggagctgtttggcttcatcgcttccgcgttagccaagttcgtcgctgatgaaggacataatgccgtgttcaacgacaggcaaagggaactggggttcaccttctctttccctgtgcggcaaacatcgattgcgtctgggactcttatcaagtggaccaaggcgttttctattgatgatgctgtaagaattctcttgatttgtcagttttcccacatcactgcatcagttgttatctaaaaaaacaaattcacaacatcaatgtcacagcgaatctgtttttcacattgttatgtgaaatgctgtcagaattttgtcattggtttctttttctgaaattagtgcttctttggaatatgacaggtaggtgaagatgtggtggccgaattgcagatggccatggagaagcaaggtctggacatgcgcgtttccgcattggttagttctgaaatgatcagttccatatcatttttgaacaaagcgaaatttgttcttatgataagcttgacattattttttgactgtttcagatcaatgacactgttgggacattggcggcaggcagctactacgacgaagatattgtcgtcggtgtgatcttaggcactggctcaaacgccgcatatcttgagaaggcaaatgctatccctaagttggaaggcgagttaccaaaatcaggaaacatggtaaggattagatatttctcaaccgaagtaactggcatgtactgcatagaatcatctactatctgtatttggatttctttctcactgtactttctgaatttcaggttattaatacagaatggggtaacttctcctcatcctgtcttccaataacagaatatgatgaagcactagataaagagagcttaaaccctggagagcaggcaagtttctctagaagattgcatactcctcacatgtcaaaagttttacccacattatatagaactgctacctgttgtctaaaaaaactatgacttgtttttttcagatcttcgagaaattgatttcaggaatgtatctaggtgaaatcgtaaggagagtgcttcttaaaatatctttgcagtcttcaatttttggcaatctagatcagaccaagctcaaaacccgctttattctgaggtatatttctcgctaaactcagttgtgtggtaatcttaatctataagctaggcaaataaagcatgatttgctgagaatatctataggatcacttggagtttcaccattgatccataataattattaggcgcaaaacatatggctttgcaattttccaaaatgagataagcaactttgaaaaaagatgtgctggcttatcctctctctcattatattcaggactcctgatatttccgtgatgcatcatgatggaacacctgatctcagaattgtggctgaaaaacttgcagataacctgaaggtaatcttcatcagtaaatccagcattgaactgtattccctctatccattttatgcacaatgaacacattacacggcattgtccacttttaccacagatcacagacacatccttagaaacaaggaagatggttgtcgaaatctgtgacatcgtcacccgaagatcagcccggctggctgctgctgggatcgtagggatcctcaggaagatcggcagaggcgtcccaggcgacaagcgaaagtcggtcatcgccatcgatggcggtctatatgaacattacaccgaattccggcagtgcctggagaccacgctgacggagttgctcggagaagaggcgtcgaagtcggtggctgtcaagcttgcaaacgacgggtctggccttggagctgccctgattgcagctgctcattctcagtacctgaattgattccccatagacagagttccaacttttattagtgactcagtgctgttgttatagtttatagaatgtggtgaagttctgtatgtttcgaaggagcctgatggactctacaaacaaaattttcagaaatgaaatcgaagccaaatgtgttggtggtgttgc</dnaseqindica>|
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* Department of Biology - Plant Biology, University of Fribourg, Rue Albert-Gockel 3, CH-1700 Fribourg, Switzerland
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001061370.1 RefSeq:Os05g0187100]|
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* State Key Laboratory of Plant Genomics, National Center for Plant Gene Research, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.
}}
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* State Key Laboratory of Rice Biology, China National Rice Research Institute, Chinese Academy of Agricultural Sciences, Hangzhou, China
[[Category:Genes]]
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* State Key Laboratory of Molecular Developmental Biology, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.
[[Category:Japonica mRNA]]
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[[Category:Oryza Sativa Japonica Group]]
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==References==
[[Category:Japonica Genes]]
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<references>
[[Category:Japonica Chromosome 5]]
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* <ref name="ref1">
[[Category:Chromosome 5]]
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Kim HB, Cho JI, Ryoo N, Shin DH, Park YI, Hwang YS, Lee SK, An G, Jeon JS.
 +
Role of rice cytosolic hexokinase OsHXK7 in sugar signaling and metabolism. J
 +
Integr Plant Biol. 2016 Feb;58(2):127-35. doi: 10.1111/jipb.12366. Epub 2015 Aug
 +
24. PubMed PMID: 25951042.
 +
 
 +
</ref>
 +
</references>
 +
</ref>
 +
</references>
 +
 
 +
==Structured Information==
 +
    [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 5]]

Latest revision as of 13:40, 16 January 2018

The rice Os05g0187100 was reported as OsHXK7 in 2015 [1] by researchers from Korea.

Annotated Information

Gene Symbol

  • Os05g0187100 <=> OsHXK7,HXK7

Function

  • OsHXK7 plays in sugar metabolism and efficient germination by enforcing glycolysis-mediated fermentation in O2-deficient rice.

Phenotypic analysis

  • The germination of two null OsHXK7 mutants, oshxk7-1 and oshxk7-2, was affected by O2 deficiency, but overexpression enhanced germination in rice.

Expression

  • According to transient expression assays that used the promoter:luciferase fusion construct, OsHXK7 enhanced the glucose (Glc)-dependent repression of a rice a-amylase gene (RAmy3D) in the mesophyll protoplasts of maize.
  • the expression of OsHXK7, but not its catalytically inactive alleles, complemented the Arabidopsis glucose insensitive2-1 (gin2-1) mutant, thereby resulting in the wild type characteristics of Glc-dependent repression,seedling development, and plant growth.
  • OsHXK7-mediated Glc-dependent repression was abolished in the O2-deficient mesophyll protoplasts of maize.


You can also add sub-section(s) at will.

Labs working on this gene

  • State Key Laboratory of Plant Physiology and Biochemistry, College of Life Sciences, Zhejiang University, Hangzhou, China;
  • Department of Biology - Plant Biology, University of Fribourg, Rue Albert-Gockel 3, CH-1700 Fribourg, Switzerland
  • State Key Laboratory of Plant Genomics, National Center for Plant Gene Research, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.
  • State Key Laboratory of Rice Biology, China National Rice Research Institute, Chinese Academy of Agricultural Sciences, Hangzhou, China
  • State Key Laboratory of Molecular Developmental Biology, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.

References

  1. Kim HB, Cho JI, Ryoo N, Shin DH, Park YI, Hwang YS, Lee SK, An G, Jeon JS. Role of rice cytosolic hexokinase OsHXK7 in sugar signaling and metabolism. J Integr Plant Biol. 2016 Feb;58(2):127-35. doi: 10.1111/jipb.12366. Epub 2015 Aug 24. PubMed PMID: 25951042.

</ref> </references>

Structured Information