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| − | Please input one-sentence summary here.
| + | The rice '''''Os08g0220600''''' was reported as '''''OsVIL1''''' in 2016 <ref name="ref1" /> by researchers from South Korea. |
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| | | | |
| | ==Annotated Information== | | ==Annotated Information== |
| | ===Function=== | | ===Function=== |
| − | Please input function information here.
| + | * OsVIL1 controls flowering time in rice by suppressing OsLF under short days and by inducing Ghd7 under long days. |
| | + | |
| | + | ===Phenotypic analysis=== |
| | + | * The reduction in OsVIL1 expression by RNA interference (RNAi) caused a late flowering phenotype under short days (SD). |
| | + | * OsVIL1-overexpressing (OX) transgenic lines displayed an early flowering phenotype under SD. |
| | | | |
| | ===Expression=== | | ===Expression=== |
| − | Please input expression information here.
| + | * The researchers investigated the role of Oryza sativa VERNALIZATION INSENSITIVE 3-LIKE 1 (OsVIL1), which is homologous to the flowering promoter OsVIL2. |
| − | | + | * The reduction in OsVIL1 expression by RNA interference (RNAi) caused a late flowering phenotype under short days (SD). |
| − | ===Evolution===
| + | * In the RNAi lines, OsLF expression was increased, but transcripts of Early heading date 1 (Ehd1), Heading date 3a (Hd3a), and RICE FLOWERING LOCUS T 1 (RFT1) were reduced. |
| − | Please input evolution information here.
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| | | | |
| | You can also add sub-section(s) at will. | | You can also add sub-section(s) at will. |
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| | ==Labs working on this gene== | | ==Labs working on this gene== |
| − | Please input related labs here.
| + | * State Key Laboratory of Plant Physiology and Biochemistry, College of Life Sciences, Zhejiang University, Hangzhou, China; |
| | + | * Department of Biology - Plant Biology, University of Fribourg, Rue Albert-Gockel 3, CH-1700 Fribourg, Switzerland |
| | + | * State Key Laboratory of Plant Genomics, National Center for Plant Gene Research, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China. |
| | + | * State Key Laboratory of Rice Biology, China National Rice Research Institute, Chinese Academy of Agricultural Sciences, Hangzhou, China |
| | + | * State Key Laboratory of Molecular Developmental Biology, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China. |
| | | | |
| | ==References== | | ==References== |
| − | Please input cited references here.
| + | <references> |
| | + | * <ref name="ref1"> |
| | + | Jeong HJ, Yang J, Cho LH, An G. OsVIL1 controls flowering time in rice by |
| | + | suppressing OsLF under short days and by inducing Ghd7 under long days. Plant |
| | + | Cell Rep. 2016 Apr;35(4):905-20. doi: 10.1007/s00299-015-1931-5. Epub 2016 Jan |
| | + | 21. PubMed PMID: 26795142. |
| | + | </ref> |
| | + | </references> |
| | | | |
| | ==Structured Information== | | ==Structured Information== |
| − | {{JaponicaGene|
| + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 8]] |
| − | GeneName = Os08g0220600|
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| − | Description = Fibronectin, type III domain containing protein|
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| − | Version = NM_001067803.1 GI:115475342 GeneID:4344961|
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| − | Length = 9012 bp|
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| − | Definition = Oryza sativa Japonica Group Os08g0220600, complete gene.|
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| − | Source = Oryza sativa Japonica Group
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| − | | |
| − | ORGANISM Oryza sativa Japonica Group
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| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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| − | clade; Ehrhartoideae; Oryzeae; Oryza.
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| − | |
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| − | Chromosome = [[:category:Japonica Chromosome 8|Chromosome 8]]|
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| − | AP = Chromosome 8:7338071..7347082|
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| − | CDS = 7338316..7339217,7339391..7339716,7340059..7340723|
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| − | GCID = <gbrowseImage1>
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| − | name=NC_008401:7338071..7347082
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| − | source=RiceChromosome08
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| − | preset=GeneLocation
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| − | </gbrowseImage1>|
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| − | GSID = <gbrowseImage2>
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| − | name=NC_008401:7338071..7347082
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| − | source=RiceChromosome08
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| − | preset=GeneLocation
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| − | </gbrowseImage2>|
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| − | CDNA = <cdnaseq>atggacccgggaaaacacaatggaatgagtctgaaggacagaagagaattagtatatgaagtttcacaatggccacaaggtgcctctgagattttacaatgttggactcgcagagatcttcttgagcttatctgtgctgagttgggcaaggagaggaaatacactaatgttccaaaatctaaaatgattgcttatctgttaaaattagttttacgaaagaatggacagccaaaggatgataatgcaaatgcttcaattttggggcagaataacaaagatgacacagagaagaaagaaaatgaggaacagccacatcatttcagcagaagtgcaaagtctgactcatcaatgtgcagagaggcccaagctggtagcacagcggtatgccgaaatgttgcatgccaggctactttgaactctggagatgcgtattgcaagcgttgctcttgctgcatttgccataaatatgatgagaacaaagatcctagcttatggttggtttgcagctctgatacaccgtactctggctattcatgcggcacatcatgccacctaaagtgtgctctaaagaataaaaaagctggcattttcaagaatgggtgcaacaagaagtcagatggtagtttttactgtgtttggtgtgggaagatgaactggctaatgaggaatctgcgtaagcagctggcaattgcaagagaatctagaagagttgatgtactgtgtgagcgtttgtcactgactcataaaatggtgaaagggtctgaacgttacagggaactggcaaacataatcaactcagctgtgaaaatacttgagaaagaagttggttgtgcattagatcaagtgtctgcaatcacggggcggggcatcgtgaaccggctttgttgtggtgctgatgttcaaaaactttgttcatgtgcactagaaatggtagactccacattgagtagcaccctggacttcgaaacaaacaataatctggaagcgccaggtccccagcctcaagtattttttgtggagattactccattttctgtgcttgttgtattgaagtaccaggataatatcgctgaggagattgatggttgcaaagtttggcaccgaagtgcaaacatggccaactatccagcagagcccacttgccacgttcttagaccaaatacaaggagtcttttttcaggtctaagcccttctactgagtatttcttcaaggttttgccttttggctgttcacagggatatggcgaatgggaggtaaaatgctctacacgaagccttaaccatggcagcagccagtgctcaacacagaattccgagagtatgtccatcaaggaggatttggagcagcatcagaaaaatgagttgaatctgaagaacaagcagtggtggggcattcaatatgactcaccctcggcaaactcgaatgagaacgatgtgtgtcctgacctgcaccctaagcgagctaagctcgcaaagttggacggtgcaagtgacaacgacgaaagccagttgctgccaacatcagaagttttaccattcatgagctctaattcttcactttcagaagttccaagcaaacctgactgggttagcagcaccccagattccgcctgcaagaaccatgttgagaggcagtatgaatacagtgtgaaggtcattagatggctggagcatgaagggcacatggacaaggatttccgcgtgaagttcctcacatggtttagcctgaaggcgtcggcacaggagcgacgcattgtgaacgccttcgtagatgctctggtgagtgatcctgcgagcctggtagcacaactgattgattcgtttatggaggttgtctgcagcaaggagaagcctgctcagccgaatggtgggtgctgcaacctttggcattag</cdnaseq>|
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| − | AA = <aaseq>MDPGKHNGMSLKDRRELVYEVSQWPQGASEILQCWTRRDLLELI CAELGKERKYTNVPKSKMIAYLLKLVLRKNGQPKDDNANASILGQNNKDDTEKKENEE QPHHFSRSAKSDSSMCREAQAGSTAVCRNVACQATLNSGDAYCKRCSCCICHKYDENK DPSLWLVCSSDTPYSGYSCGTSCHLKCALKNKKAGIFKNGCNKKSDGSFYCVWCGKMN WLMRNLRKQLAIARESRRVDVLCERLSLTHKMVKGSERYRELANIINSAVKILEKEVG CALDQVSAITGRGIVNRLCCGADVQKLCSCALEMVDSTLSSTLDFETNNNLEAPGPQP QVFFVEITPFSVLVVLKYQDNIAEEIDGCKVWHRSANMANYPAEPTCHVLRPNTRSLF SGLSPSTEYFFKVLPFGCSQGYGEWEVKCSTRSLNHGSSQCSTQNSESMSIKEDLEQH QKNELNLKNKQWWGIQYDSPSANSNENDVCPDLHPKRAKLAKLDGASDNDESQLLPTS EVLPFMSSNSSLSEVPSKPDWVSSTPDSACKNHVERQYEYSVKVIRWLEHEGHMDKDF RVKFLTWFSLKASAQERRIVNAFVDALVSDPASLVAQLIDSFMEVVCSKEKPAQPNGG CCNLWH</aaseq>|
| |
| − | DNA = <dnaseqindica>7866..8767#7367..7692#6360..7024#acgatcttggttcgcttcgtgcgactcctcctcctcttgcgccggtgccgacctcgcctcgcctcgcctgcgtcgcgtcgatctcgccagcggcggcgccagccggccggcgtctgctgcgtcctccgcatcctcgctcgccggtgagcatccatggccatgctcattctcatctcgctctacccgcgctgtttttttcgaattcgcgttagccctagcttttcttctagatctggaagcagcttttctctttgcactttttgcgttagcccttgcaataacaatagtaacagtttaatctgttcccaatagagaattttggggttcaaccgaaccctcatgtcccagctaggtccgcccctgtcagtgcgactgccttgttgcaacttttttttttgtttttggttatactcctatcaactattcctgagtgtacaatgcgataagattttgttcccttccctgcagagagttggggtcaagcaaagttggttgttttttactcgaatgtcgtgaggaacaccgaggaatcctccagtttcgcatggtagggtccaatgcctttttctgactaaaaagctgttggttttgttaagtgttgttatcaccattttatgaaatgtttacatgtgcccaacaacttagtattatcgttttctccaaccatgcagagacccatatgttgaacaaaggtgaagctgtgctgtggagacctgataaaattttctaataatgcttgtgcaaatgaagaatactgttcatctcacgctattcctgtgttctttctcaagaatgctttgctcctattcttttattgaaatcaatttgtgttattatcttcccattcgtaaggtgctgactagttcacttttttatgtcatagagtaggaaggttctctgtactgcaagtgtttggatttcctcgagccgaatgagctttcactggtggatgtggtaataaaagtccctgttttcaggtatacgctgactgtagtgttttggggatatacgctacactaataatagagaacacatacaaattaatccctataagtgaactggaactactgtgttattagtgtgttggccagatttggatgactaaggtcaaatgctaaaaatcatttggaatctttcaaaaaaggaccatttggattactattccgtacatgctctcaggcccttccacgttctacttttctaatggcataagtaatgtatctgccttgatttgcaccaccaatatcagctaatactttagttcctgttccatctcctgaaaacaatggtccttcaatttcgcagtatcagtcctttcactgtatgctttcctacccaagcttctccttcatatatttaaaagaatgggtaaatatagaacagaataaagtggctacactatggatcagtccggtgaacaattattgtgacacagtttttttcccaataaactgggcatgtcttgtgaaacagagtgatctctgtctttatgatagacaaataactatgttggagtttgctagaactacttgtaaggaagatgccattaagtgaccacctgaaatcgtgttgtagtgtcattccataacatttatttaagatttctccaatggaagttgtatctaaatatgcctaatattttgcatatgtagtgtttgctctttggaattataaatcattctaggatgctgttccaatcagtttgggaagctcaggttttcatcaaagacgattagtaaaatttctgtcagtctgcaaaatttgtggtatggtaaaattcctttaaagtatagaaaatttaagctgacaaacaaaagttagggccattgtatattacatcaaaagattgtttcattctgttgctatcaatcttaaataacgatttcagggtgcaggatccaggttcccattgggccacgtggcactttacaaatttttgtaaggctactctgaaattgtgccacgtggcctcccctatgcatatttaaactgcattctcctgtccactgaactgttaggaaaactctggagtcaataaatcacctttgcctgacccttgtgaagaagttagagatgtaacccatccgaagtctctagaaaaattaaggtattacatggtccttcacgtgtattaagtataggcagtcaaaaaggtaaaattctctacacgcacaaactatttcagtactcacatagtcacatattgatttccaagaccttggatgctttaacttttcaagactggttttaacttttaatacaaagagtaatcttttatatatggctctgcgtattaagctgacaattagagtcatttgcctaaaaagttacgccttaaataaatttcgtaattttcctataggttgacaaattctgtaaatcatactaattcaaaagacacatcttccaaagtatttgttcaaggtatgtatatacgcttaaacaaattaatcttccattagcaaaatttgttttcaggttgaattataattatacaccagacaagtacagctagctaaatgcggcagagaagaattagccatgcataaactaattaaccatattactctatttgttgataatattgctctaattatgttccattgtacctatgattagcttatattatttttaagatgtggggggtatcgtatatgagactacagaggggactaggtgacactggtagattagcacaagaaatgtctcttagagagacttgtcaaaaactatatcctttagttttcagtccactaatcatctaatcttactaattattaataggtgttaatcactctgtctaatggaagagaaaaacaaaggtttgaaagtaaataggcaagtactacacataattttgctttctgtattaattcttttacaatgcttaaatctttacataaatacggttattattacaggttaatcgttcgtcaaccttttcaaaattcattaaataggttcttctaaatctacaagtgtatagattttttttaaagaaaagaaattatcaagtactgcatttgaaactttaaacaacaacaacaataattgttctaaataagtaaatatatcatagctataagttggtgtgccgatggtgcgccaattttctacgatatggaagcggcgaattgggaaaggatagggtggtgagattttatatttgtttctaatttttagggtattcagtgtaatgttggactactctataaatttgaaaaacatatggactaaagtaagaaatatgattgcccgacatgaaaaatcaaagctatctctagagttactttgcattatgggataaacaaatttgagacatgttacctcatcctacatgatactttgaggtcctttataggagggtcttgcactatgaatgtccaaagagaggtggtatagctatagttttccgaattatacatatggagctacgaattatgacatctaaatggtgtactacttgcaatagaagatatggaggcgtgtccctatccattcacatgtggctcttcaaatagcacgtgaactttgttgccctctcgtagtcatgacaatattttcgactactgagaagataagcaaatattgagaaaaaaaagagagagcgtggtagatatacaaatgataagatttttaaccatcaaaataatggatttaataatcctaaagtaaaagaaatagagagaatttaaaaggttataattaggccgaaagaaaataaaaatatgggaagaaggaaaagaacaaaatattttccatttctttcataaccagttaaaaaaacaatccaactgttagggcaattgtaagaaacctctaattattgaagtcccaaacgattttcatataaaacttcgccttttagccttatcttattaataataatcaaattgaccatcaaccaacatatatttgacatcattctttttttcctctgtaatttaaatatttacaaatataatgttttcataaaattgaaaaactgctaaaagatctctttaaaatgttacgcttttacgaataacaataaatagtacgtgtagtataaatatggtttgctatatggatggtgcgctaacggcgcaccaattttctagtgttatctaattgctgatcgatcctgatcgccaagggaccgatcaggtcaattcatcgtcgatcagccttgattcatcgtcgatcagccttgattaatcgacctgatcgatactatgtataccagaacctatattctatatagtgcacagtataaagcaatcacagtgcataattgatggcaggatggtcaattacttgccgtagtataaagcaatcattgtataaagcaaccagcagtagtagcacatcttcacatgtgctaaaccctaagacttgttctaaaaatgatcataggtgctctgatcagacgattaatcgcgcctgattgacgattaaccggacgatcagatttctgatcgaatgaatgtccctaatcggattcaggggattgatcaggacaattaattgcgattaatcggacgatcagataacactgattgctatagcaatagcagttgctttcctctctccagtctccaccataggttgtgtggagtccacccaagaatttctcttgttcccttgttcactctttctttttttcttcgtccgtgtttatctacttttgttgaatcgacagttgttcaaaatcttggatttgttggccagttggtagactcatggtttttaaggcagtaaggcgtcctaaggcgaccccggactgccttatcgccatagcggtaagacgtaaggcgaggcgacaccttaggcactccatactaattaggtggcaaacaaaataatctaatatgctagcaaatcaaagttgcattttaagagcagtacaacgcgcatatatataccttgttcttggcaactcttgagcccactagatggttataataattacttaacaagatatcaatttattaactactaacagggagtcagggatgcaggggaggggcagggagtaaaacagagcagtagaggaaggagtttagtagatgaaatgtagaggagagagaggaaagaccacaacatagtactctctccgtccctaaatatttgacgccgttgactttttgaaatatgtttgacagttagtcttattcaaaaaatttaagtaattattaattcttttcctatcattgattcattgttaaatatactactactactcaagtttttgaataatattcacaaaagtttttgaataagacgaatggtcaaacatgtttaaaaaagtcaacggcgtcaaatatttagggacaaagggagtggcaaaagagggagaagagtacataggatgtagaagaggggggaggaaacaccaaaacagagcagcagaggaaggataagagcagagcagaggaaggtgcaaagcaggatcacgtagagcagagaaagaaacagaggaaagtagagggtggagggaagagaaagaagagcatgcccgcttagtttttgtgtcaatggaggaccaggatgatggcgcaggtgccgaggaccaggatgatggcgcaggcacaggataggcacatgtgacagctgggattgccgctagggatggagaagtcaccagggatggatcgccatcgccacagcctcaggctccagcgaccctctttctgttgttttctccctgatttggtgggatttggtgcgtggggaccttttcacccctaagattggcgcttctgttagttctgtttcgtgcccagggccgcaccaatttttttgggcccttcaaccaatcgcggcaaaaactgcgccttcaacttcctctggcgtcgcctttaaccgttgtagcacctaaggacgtgatatcgacgtcatagcgacgccttgggcataaggcggacgccataaacaatatggtaaggcgggctagacgcagtgactcctggcactggcagcgccttacctccatagcgacgctatggcgacgccttgacacttaattttggattttttttaactgtagtacaaaatacaagttattataaaatcccaactaaattgattgagttaaattgggttttggttgacttacgaagttatggtcatccattggattgttgccaggtagtcagctgattgtgtatatgactcaactatacattttgtttgttggtatcagtatatgatactatcacttattgtgtcctttagatgtcaatctgcatttttactctgtccgttgcagcacacttacttttctttctttatttgtatatactcatctctattgaatccttgctagatggtatttgctataggcctggacctcattattctattttccaggatttttcatggacccgggaaaacacaatggaatgagtctgaaggacagaagagaattagtatatgaagtttcacaatggccacaaggtgcctctgagattttacaatgttggactcgcagagatcttcttgagcttatctgtgctgagttgggcaaggagaggaaatacactaatgttccaaaatctaaaatgattgcttatctgttaaaattagttttacgaaagaatggacagccaaaggatgataatgcaaatgcttcaattttggggcagaataacaaagatgacacagagaagaaagaaaatgaggaacagccacatcatttcagcagaagtgcaaagtctgactcatcaatgtgcagagaggcccaagctggtagcacagcggtatgccgaaatgttgcatgccaggctactttgaactctggagatgcgtattgcaagcgttgctcttgctgcatttgccataaatatgatgagaacaaagatcctagcttatggttggtttgcagctctgatacaccgtactctggctattcatgcggcacatcatgccacctaaagtgtgctctaaagaataaaaaagctggcattttcaagaatgggtgcaacaagaagtcagatggtagtttttactgtgtttggtgtgggaagatgaactggctaatgaggtatctctttgctattttaattataacattccagttatttatgtggaaacaaacacatctaaaattgtgttctgcatgttatcctaattctgaagtagcatggtgtggtactgatccctgaccaaaactgtcctttttttttggtagcatgcattgctcagctttaatatcatgtttttgtgttaagcaattcatctgatactttatatattgaaaatttgtgccagttttacaatctacccattctcattttggcacttacaatcttggtcttgtattaaaaaatcaagagtattcacagtgaaattttacctctagatttcacctcttacatcattgcaggaatctgcgtaagcagctggcaattgcaagagaatctagaagagttgatgtactgtgtgagcgtttgtcactgactcataaaatggtgaaagggtctgaacgttacagggaactggcaaacataatcaactcagctgtgaaaatacttgagaaagaagttggttgtgcattagatcaagtgtctgcaatcacggggcggggcatcgtgaaccggctttgttgtggtgctgatgttcaaaaactttgttcatgtgcactagaaatggtagactccacattgagtagcaccctggacttcgaaacaaacaataatctggaagcgccaggtaattttgtgatagtattgactcacacaaaactgcagttctactccgcaaaattatccctgcagaactaggcattgttatgcaaagagttatttatgatcttccaatgttttgcatactacgacaatgatgtattgacattgtgtgtgaagagattttatccacttttgcaggtccccagcctcaagtattttttgtggagattactccattttctgtgcttgttgtattgaagtaccaggataatatcgctgaggagattgatggttgcaaagtttggcaccgaagtgcaaacatggccaactatccagcagagcccacttgccacgttcttagaccaaatacaaggagtcttttttcaggtctaagcccttctactgagtatttcttcaaggttttgccttttggctgttcacagggatatggcgaatgggaggtaaaatgctctacacgaagccttaaccatggcagcagccagtgctcaacacagaattccgagagtatgtccatcaaggaggatttggagcagcatcagaaaaatgagttgaatctgaagaacaagcagtggtggggcattcaatatgactcaccctcggcaaactcgaatgagaacgatgtgtgtcctgacctgcaccctaagcgagctaagctcgcaaagttggacggtgcaagtgacaacgacgaaagccagttgctgccaacatcagaagttttaccattcatgagctctaattcttcactttcagaagttccaagcaaacctgactgggttagcagcaccccagattccgcctgcaagaaccatgttgagaggcagtatgaatacagtgtgaaggtcattagatggctggagcatgaagggcacatggacaaggatttccgcgtgaagttcctcacatggtttagcctgaaggcgtcggcacaggagcgacgcattgtgaacgccttcgtagatgctctggtgagtgatcctgcgagcctggtagcacaactgattgattcgtttatggaggttgtctgcagcaaggagaagcctgctcagccgaatggtgggtgctgcaacctttggcattagaaagttccattgccactgaggaatctcactatcatatttttgccaataatcatctgcatcgaaaagctgagcaattcaagctatggcttattgctttatttgatcaatttaacactagttgctgattgctaggtttctgaactgtggtggtggtggtggtggttatgttaggtgtatgaactaagctgaagttgttgacaagtgattcctggaatgctataaatggaggtaggtttagatgcttc</dnaseqindica>|
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| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001067803.1 RefSeq:Os08g0220600]|
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| − | }}
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| − | [[Category:Genes]] | |
| − | [[Category:Japonica mRNA]]
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| − | [[Category:Oryza Sativa Japonica Group]] | |
| − | [[Category:Japonica Genes]] | |
| − | [[Category:Japonica Chromosome 8]]
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| − | [[Category:Chromosome 8]]
| |
