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| − | {{JaponicaGene|
| + | The rice '''''Os08g0220600''''' was reported as '''''OsVIL1''''' in 2016 <ref name="ref1" /> by researchers from South Korea. |
| − | GeneName = Os08g0220600|
| |
| − | Description = Fibronectin, type III domain containing protein|
| |
| − | Version = NM_001067803.1 GI:115475342 GeneID:4344961|
| |
| − | Length = 9012 bp|
| |
| − | Definition = Oryza sativa Japonica Group Os08g0220600, complete gene.|
| |
| − | Source = Oryza sativa Japonica Group
| |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| + | |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | ==Annotated Information== |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| + | ===Function=== |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| + | * OsVIL1 controls flowering time in rice by suppressing OsLF under short days and by inducing Ghd7 under long days. |
| − | |
| + | |
| − | Chromosome = [[:category:Japonica Chromosome 8|Chromosome 8]]|
| + | ===Phenotypic analysis=== |
| − | AP = Chromosome 8:7338071..7347082|
| + | * The reduction in OsVIL1 expression by RNA interference (RNAi) caused a late flowering phenotype under short days (SD). |
| − | CDS = 7338316..7339217,7339391..7339716,7340059..7340723|
| + | * OsVIL1-overexpressing (OX) transgenic lines displayed an early flowering phenotype under SD. |
| − | GCID = <gbrowseImage1>
| + | |
| − | name=NC_008401:7338071..7347082
| + | ===Expression=== |
| − | source=RiceChromosome08
| + | * The researchers investigated the role of Oryza sativa VERNALIZATION INSENSITIVE 3-LIKE 1 (OsVIL1), which is homologous to the flowering promoter OsVIL2. |
| − | preset=GeneLocation
| + | * The reduction in OsVIL1 expression by RNA interference (RNAi) caused a late flowering phenotype under short days (SD). |
| − | </gbrowseImage1>|
| + | * In the RNAi lines, OsLF expression was increased, but transcripts of Early heading date 1 (Ehd1), Heading date 3a (Hd3a), and RICE FLOWERING LOCUS T 1 (RFT1) were reduced. |
| − | GSID = <gbrowseImage2>
| + | |
| − | name=NC_008401:7338071..7347082
| + | You can also add sub-section(s) at will. |
| − | source=RiceChromosome08
| + | |
| − | preset=GeneLocation
| + | ==Labs working on this gene== |
| − | </gbrowseImage2>| | + | * State Key Laboratory of Plant Physiology and Biochemistry, College of Life Sciences, Zhejiang University, Hangzhou, China; |
| − | CDNA = <cdnaseq>atggacccgggaaaacacaatggaatgagtctgaaggacagaagagaattagtatatgaagtttcacaatggccacaaggtgcctctgagattttacaatgttggactcgcagagatcttcttgagcttatctgtgctgagttgggcaaggagaggaaatacactaatgttccaaaatctaaaatgattgcttatctgttaaaattagttttacgaaagaatggacagccaaaggatgataatgcaaatgcttcaattttggggcagaataacaaagatgacacagagaagaaagaaaatgaggaacagccacatcatttcagcagaagtgcaaagtctgactcatcaatgtgcagagaggcccaagctggtagcacagcggtatgccgaaatgttgcatgccaggctactttgaactctggagatgcgtattgcaagcgttgctcttgctgcatttgccataaatatgatgagaacaaagatcctagcttatggttggtttgcagctctgatacaccgtactctggctattcatgcggcacatcatgccacctaaagtgtgctctaaagaataaaaaagctggcattttcaagaatgggtgcaacaagaagtcagatggtagtttttactgtgtttggtgtgggaagatgaactggctaatgaggaatctgcgtaagcagctggcaattgcaagagaatctagaagagttgatgtactgtgtgagcgtttgtcactgactcataaaatggtgaaagggtctgaacgttacagggaactggcaaacataatcaactcagctgtgaaaatacttgagaaagaagttggttgtgcattagatcaagtgtctgcaatcacggggcggggcatcgtgaaccggctttgttgtggtgctgatgttcaaaaactttgttcatgtgcactagaaatggtagactccacattgagtagcaccctggacttcgaaacaaacaataatctggaagcgccaggtccccagcctcaagtattttttgtggagattactccattttctgtgcttgttgtattgaagtaccaggataatatcgctgaggagattgatggttgcaaagtttggcaccgaagtgcaaacatggccaactatccagcagagcccacttgccacgttcttagaccaaatacaaggagtcttttttcaggtctaagcccttctactgagtatttcttcaaggttttgccttttggctgttcacagggatatggcgaatgggaggtaaaatgctctacacgaagccttaaccatggcagcagccagtgctcaacacagaattccgagagtatgtccatcaaggaggatttggagcagcatcagaaaaatgagttgaatctgaagaacaagcagtggtggggcattcaatatgactcaccctcggcaaactcgaatgagaacgatgtgtgtcctgacctgcaccctaagcgagctaagctcgcaaagttggacggtgcaagtgacaacgacgaaagccagttgctgccaacatcagaagttttaccattcatgagctctaattcttcactttcagaagttccaagcaaacctgactgggttagcagcaccccagattccgcctgcaagaaccatgttgagaggcagtatgaatacagtgtgaaggtcattagatggctggagcatgaagggcacatggacaaggatttccgcgtgaagttcctcacatggtttagcctgaaggcgtcggcacaggagcgacgcattgtgaacgccttcgtagatgctctggtgagtgatcctgcgagcctggtagcacaactgattgattcgtttatggaggttgtctgcagcaaggagaagcctgctcagccgaatggtgggtgctgcaacctttggcattag</cdnaseq>|
| + | * Department of Biology - Plant Biology, University of Fribourg, Rue Albert-Gockel 3, CH-1700 Fribourg, Switzerland |
| − | AA = <aaseq>MDPGKHNGMSLKDRRELVYEVSQWPQGASEILQCWTRRDLLELI CAELGKERKYTNVPKSKMIAYLLKLVLRKNGQPKDDNANASILGQNNKDDTEKKENEE QPHHFSRSAKSDSSMCREAQAGSTAVCRNVACQATLNSGDAYCKRCSCCICHKYDENK DPSLWLVCSSDTPYSGYSCGTSCHLKCALKNKKAGIFKNGCNKKSDGSFYCVWCGKMN WLMRNLRKQLAIARESRRVDVLCERLSLTHKMVKGSERYRELANIINSAVKILEKEVG CALDQVSAITGRGIVNRLCCGADVQKLCSCALEMVDSTLSSTLDFETNNNLEAPGPQP QVFFVEITPFSVLVVLKYQDNIAEEIDGCKVWHRSANMANYPAEPTCHVLRPNTRSLF SGLSPSTEYFFKVLPFGCSQGYGEWEVKCSTRSLNHGSSQCSTQNSESMSIKEDLEQH QKNELNLKNKQWWGIQYDSPSANSNENDVCPDLHPKRAKLAKLDGASDNDESQLLPTS EVLPFMSSNSSLSEVPSKPDWVSSTPDSACKNHVERQYEYSVKVIRWLEHEGHMDKDF RVKFLTWFSLKASAQERRIVNAFVDALVSDPASLVAQLIDSFMEVVCSKEKPAQPNGG CCNLWH</aaseq>|
| + | * State Key Laboratory of Plant Genomics, National Center for Plant Gene Research, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China. |
| − | DNA = <dnaseqindica>7866..8767#7367..7692#6360..7024#acgatcttggttcgcttcgtgcgactcctcctcctcttgcgccggtgccgacctcgcctcgcctcgcctgcgtcgcgtcgatctcgccagcggcggcgccagccggccggcgtctgctgcgtcctccgcatcctcgctcgccggtgagcatccatggccatgctcattctcatctcgctctacccgcgctgtttttttcgaattcgcgttagccctagcttttcttctagatctggaagcagcttttctctttgcactttttgcgttagcccttgcaataacaatagtaacagtttaatctgttcccaatagagaattttggggttcaaccgaaccctcatgtcccagctaggtccgcccctgtcagtgcgactgccttgttgcaacttttttttttgtttttggttatactcctatcaactattcctgagtgtacaatgcgataagattttgttcccttccctgcagagagttggggtcaagcaaagttggttgttttttactcgaatgtcgtgaggaacaccgaggaatcctccagtttcgcatggtagggtccaatgcctttttctgactaaaaagctgttggttttgttaagtgttgttatcaccattttatgaaatgtttacatgtgcccaacaacttagtattatcgttttctccaaccatgcagagacccatatgttgaacaaaggtgaagctgtgctgtggagacctgataaaattttctaataatgcttgtgcaaatgaagaatactgttcatctcacgctattcctgtgttctttctcaagaatgctttgctcctattcttttattgaaatcaatttgtgttattatcttcccattcgtaaggtgctgactagttcacttttttatgtcatagagtaggaaggttctctgtactgcaagtgtttggatttcctcgagccgaatgagctttcactggtggatgtggtaataaaagtccctgttttcaggtatacgctgactgtagtgttttggggatatacgctacactaataatagagaacacatacaaattaatccctataagtgaactggaactactgtgttattagtgtgttggccagatttggatgactaaggtcaaatgctaaaaatcatttggaatctttcaaaaaaggaccatttggattactattccgtacatgctctcaggcccttccacgttctacttttctaatggcataagtaatgtatctgccttgatttgcaccaccaatatcagctaatactttagttcctgttccatctcctgaaaacaatggtccttcaatttcgcagtatcagtcctttcactgtatgctttcctacccaagcttctccttcatatatttaaaagaatgggtaaatatagaacagaataaagtggctacactatggatcagtccggtgaacaattattgtgacacagtttttttcccaataaactgggcatgtcttgtgaaacagagtgatctctgtctttatgatagacaaataactatgttggagtttgctagaactacttgtaaggaagatgccattaagtgaccacctgaaatcgtgttgtagtgtcattccataacatttatttaagatttctccaatggaagttgtatctaaatatgcctaatattttgcatatgtagtgtttgctctttggaattataaatcattctaggatgctgttccaatcagtttgggaagctcaggttttcatcaaagacgattagtaaaatttctgtcagtctgcaaaatttgtggtatggtaaaattcctttaaagtatagaaaatttaagctgacaaacaaaagttagggccattgtatattacatcaaaagattgtttcattctgttgctatcaatcttaaataacgatttcagggtgcaggatccaggttcccattgggccacgtggcactttacaaatttttgtaaggctactctgaaattgtgccacgtggcctcccctatgcatatttaaactgcattctcctgtccactgaactgttaggaaaactctggagtcaataaatcacctttgcctgacccttgtgaagaagttagagatgtaacccatccgaagtctctagaaaaattaaggtattacatggtccttcacgtgtattaagtataggcagtcaaaaaggtaaaattctctacacgcacaaactatttcagtactcacatagtcacatattgatttccaagaccttggatgctttaacttttcaagactggttttaacttttaatacaaagagtaatcttttatatatggctctgcgtattaagctgacaattagagtcatttgcctaaaaagttacgccttaaataaatttcgtaattttcctataggttgacaaattctgtaaatcatactaattcaaaagacacatcttccaaagtatttgttcaaggtatgtatatacgcttaaacaaattaatcttccattagcaaaatttgttttcaggttgaattataattatacaccagacaagtacagctagctaaatgcggcagagaagaattagccatgcataaactaattaaccatattactctatttgttgataatattgctctaattatgttccattgtacctatgattagcttatattatttttaagatgtggggggtatcgtatatgagactacagaggggactaggtgacactggtagattagcacaagaaatgtctcttagagagacttgtcaaaaactatatcctttagttttcagtccactaatcatctaatcttactaattattaataggtgttaatcactctgtctaatggaagagaaaaacaaaggtttgaaagtaaataggcaagtactacacataattttgctttctgtattaattcttttacaatgcttaaatctttacataaatacggttattattacaggttaatcgttcgtcaaccttttcaaaattcattaaataggttcttctaaatctacaagtgtatagattttttttaaagaaaagaaattatcaagtactgcatttgaaactttaaacaacaacaacaataattgttctaaataagtaaatatatcatagctataagttggtgtgccgatggtgcgccaattttctacgatatggaagcggcgaattgggaaaggatagggtggtgagattttatatttgtttctaatttttagggtattcagtgtaatgttggactactctataaatttgaaaaacatatggactaaagtaagaaatatgattgcccgacatgaaaaatcaaagctatctctagagttactttgcattatgggataaacaaatttgagacatgttacctcatcctacatgatactttgaggtcctttataggagggtcttgcactatgaatgtccaaagagaggtggtatagctatagttttccgaattatacatatggagctacgaattatgacatctaaatggtgtactacttgcaatagaagatatggaggcgtgtccctatccattcacatgtggctcttcaaatagcacgtgaactttgttgccctctcgtagtcatgacaatattttcgactactgagaagataagcaaatattgagaaaaaaaagagagagcgtggtagatatacaaatgataagatttttaaccatcaaaataatggatttaataatcctaaagtaaaagaaatagagagaatttaaaaggttataattaggccgaaagaaaataaaaatatgggaagaaggaaaagaacaaaatattttccatttctttcataaccagttaaaaaaacaatccaactgttagggcaattgtaagaaacctctaattattgaagtcccaaacgattttcatataaaacttcgccttttagccttatcttattaataataatcaaattgaccatcaaccaacatatatttgacatcattctttttttcctctgtaatttaaatatttacaaatataatgttttcataaaattgaaaaactgctaaaagatctctttaaaatgttacgcttttacgaataacaataaatagtacgtgtagtataaatatggtttgctatatggatggtgcgctaacggcgcaccaattttctagtgttatctaattgctgatcgatcctgatcgccaagggaccgatcaggtcaattcatcgtcgatcagccttgattcatcgtcgatcagccttgattaatcgacctgatcgatactatgtataccagaacctatattctatatagtgcacagtataaagcaatcacagtgcataattgatggcaggatggtcaattacttgccgtagtataaagcaatcattgtataaagcaaccagcagtagtagcacatcttcacatgtgctaaaccctaagacttgttctaaaaatgatcataggtgctctgatcagacgattaatcgcgcctgattgacgattaaccggacgatcagatttctgatcgaatgaatgtccctaatcggattcaggggattgatcaggacaattaattgcgattaatcggacgatcagataacactgattgctatagcaatagcagttgctttcctctctccagtctccaccataggttgtgtggagtccacccaagaatttctcttgttcccttgttcactctttctttttttcttcgtccgtgtttatctacttttgttgaatcgacagttgttcaaaatcttggatttgttggccagttggtagactcatggtttttaaggcagtaaggcgtcctaaggcgaccccggactgccttatcgccatagcggtaagacgtaaggcgaggcgacaccttaggcactccatactaattaggtggcaaacaaaataatctaatatgctagcaaatcaaagttgcattttaagagcagtacaacgcgcatatatataccttgttcttggcaactcttgagcccactagatggttataataattacttaacaagatatcaatttattaactactaacagggagtcagggatgcaggggaggggcagggagtaaaacagagcagtagaggaaggagtttagtagatgaaatgtagaggagagagaggaaagaccacaacatagtactctctccgtccctaaatatttgacgccgttgactttttgaaatatgtttgacagttagtcttattcaaaaaatttaagtaattattaattcttttcctatcattgattcattgttaaatatactactactactcaagtttttgaataatattcacaaaagtttttgaataagacgaatggtcaaacatgtttaaaaaagtcaacggcgtcaaatatttagggacaaagggagtggcaaaagagggagaagagtacataggatgtagaagaggggggaggaaacaccaaaacagagcagcagaggaaggataagagcagagcagaggaaggtgcaaagcaggatcacgtagagcagagaaagaaacagaggaaagtagagggtggagggaagagaaagaagagcatgcccgcttagtttttgtgtcaatggaggaccaggatgatggcgcaggtgccgaggaccaggatgatggcgcaggcacaggataggcacatgtgacagctgggattgccgctagggatggagaagtcaccagggatggatcgccatcgccacagcctcaggctccagcgaccctctttctgttgttttctccctgatttggtgggatttggtgcgtggggaccttttcacccctaagattggcgcttctgttagttctgtttcgtgcccagggccgcaccaatttttttgggcccttcaaccaatcgcggcaaaaactgcgccttcaacttcctctggcgtcgcctttaaccgttgtagcacctaaggacgtgatatcgacgtcatagcgacgccttgggcataaggcggacgccataaacaatatggtaaggcgggctagacgcagtgactcctggcactggcagcgccttacctccatagcgacgctatggcgacgccttgacacttaattttggattttttttaactgtagtacaaaatacaagttattataaaatcccaactaaattgattgagttaaattgggttttggttgacttacgaagttatggtcatccattggattgttgccaggtagtcagctgattgtgtatatgactcaactatacattttgtttgttggtatcagtatatgatactatcacttattgtgtcctttagatgtcaatctgcatttttactctgtccgttgcagcacacttacttttctttctttatttgtatatactcatctctattgaatccttgctagatggtatttgctataggcctggacctcattattctattttccaggatttttcatggacccgggaaaacacaatggaatgagtctgaaggacagaagagaattagtatatgaagtttcacaatggccacaaggtgcctctgagattttacaatgttggactcgcagagatcttcttgagcttatctgtgctgagttgggcaaggagaggaaatacactaatgttccaaaatctaaaatgattgcttatctgttaaaattagttttacgaaagaatggacagccaaaggatgataatgcaaatgcttcaattttggggcagaataacaaagatgacacagagaagaaagaaaatgaggaacagccacatcatttcagcagaagtgcaaagtctgactcatcaatgtgcagagaggcccaagctggtagcacagcggtatgccgaaatgttgcatgccaggctactttgaactctggagatgcgtattgcaagcgttgctcttgctgcatttgccataaatatgatgagaacaaagatcctagcttatggttggtttgcagctctgatacaccgtactctggctattcatgcggcacatcatgccacctaaagtgtgctctaaagaataaaaaagctggcattttcaagaatgggtgcaacaagaagtcagatggtagtttttactgtgtttggtgtgggaagatgaactggctaatgaggtatctctttgctattttaattataacattccagttatttatgtggaaacaaacacatctaaaattgtgttctgcatgttatcctaattctgaagtagcatggtgtggtactgatccctgaccaaaactgtcctttttttttggtagcatgcattgctcagctttaatatcatgtttttgtgttaagcaattcatctgatactttatatattgaaaatttgtgccagttttacaatctacccattctcattttggcacttacaatcttggtcttgtattaaaaaatcaagagtattcacagtgaaattttacctctagatttcacctcttacatcattgcaggaatctgcgtaagcagctggcaattgcaagagaatctagaagagttgatgtactgtgtgagcgtttgtcactgactcataaaatggtgaaagggtctgaacgttacagggaactggcaaacataatcaactcagctgtgaaaatacttgagaaagaagttggttgtgcattagatcaagtgtctgcaatcacggggcggggcatcgtgaaccggctttgttgtggtgctgatgttcaaaaactttgttcatgtgcactagaaatggtagactccacattgagtagcaccctggacttcgaaacaaacaataatctggaagcgccaggtaattttgtgatagtattgactcacacaaaactgcagttctactccgcaaaattatccctgcagaactaggcattgttatgcaaagagttatttatgatcttccaatgttttgcatactacgacaatgatgtattgacattgtgtgtgaagagattttatccacttttgcaggtccccagcctcaagtattttttgtggagattactccattttctgtgcttgttgtattgaagtaccaggataatatcgctgaggagattgatggttgcaaagtttggcaccgaagtgcaaacatggccaactatccagcagagcccacttgccacgttcttagaccaaatacaaggagtcttttttcaggtctaagcccttctactgagtatttcttcaaggttttgccttttggctgttcacagggatatggcgaatgggaggtaaaatgctctacacgaagccttaaccatggcagcagccagtgctcaacacagaattccgagagtatgtccatcaaggaggatttggagcagcatcagaaaaatgagttgaatctgaagaacaagcagtggtggggcattcaatatgactcaccctcggcaaactcgaatgagaacgatgtgtgtcctgacctgcaccctaagcgagctaagctcgcaaagttggacggtgcaagtgacaacgacgaaagccagttgctgccaacatcagaagttttaccattcatgagctctaattcttcactttcagaagttccaagcaaacctgactgggttagcagcaccccagattccgcctgcaagaaccatgttgagaggcagtatgaatacagtgtgaaggtcattagatggctggagcatgaagggcacatggacaaggatttccgcgtgaagttcctcacatggtttagcctgaaggcgtcggcacaggagcgacgcattgtgaacgccttcgtagatgctctggtgagtgatcctgcgagcctggtagcacaactgattgattcgtttatggaggttgtctgcagcaaggagaagcctgctcagccgaatggtgggtgctgcaacctttggcattagaaagttccattgccactgaggaatctcactatcatatttttgccaataatcatctgcatcgaaaagctgagcaattcaagctatggcttattgctttatttgatcaatttaacactagttgctgattgctaggtttctgaactgtggtggtggtggtggtggttatgttaggtgtatgaactaagctgaagttgttgacaagtgattcctggaatgctataaatggaggtaggtttagatgcttc</dnaseqindica>|
| + | * State Key Laboratory of Rice Biology, China National Rice Research Institute, Chinese Academy of Agricultural Sciences, Hangzhou, China |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001067803.1 RefSeq:Os08g0220600]|
| + | * State Key Laboratory of Molecular Developmental Biology, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China. |
| − | }}
| + | |
| − | [[Category:Genes]] | + | ==References== |
| − | [[Category:Japonica mRNA]]
| + | <references> |
| − | [[Category:Oryza Sativa Japonica Group]] | + | * <ref name="ref1"> |
| − | [[Category:Japonica Genes]] | + | Jeong HJ, Yang J, Cho LH, An G. OsVIL1 controls flowering time in rice by |
| − | [[Category:Japonica Chromosome 8]]
| + | suppressing OsLF under short days and by inducing Ghd7 under long days. Plant |
| − | [[Category:Chromosome 8]]
| + | Cell Rep. 2016 Apr;35(4):905-20. doi: 10.1007/s00299-015-1931-5. Epub 2016 Jan |
| | + | 21. PubMed PMID: 26795142. |
| | + | </ref> |
| | + | </references> |
| | + | |
| | + | ==Structured Information== |
| | + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 8]] |
