Difference between revisions of "Os04g0271700"

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(Created page with "{{JaponicaGene| GeneName = Os04g0271700| Description = UDP-glucuronosyl/UDP-glucosyltransferase family protein| Version = NM_001058881.1 GI:115457491 GeneID:4335345| Lengt...")
 
 
(2 intermediate revisions by 2 users not shown)
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{{JaponicaGene|
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The rice '''''Os04g0271700''''' was reported as '''''OscZOG1''''' in 2015 <ref name="ref1" /> by researchers from China.
GeneName = Os04g0271700|
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==Annotated Information==
Description = UDP-glucuronosyl/UDP-glucosyltransferase family protein|
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===Function===
Version = NM_001058881.1 GI:115457491 GeneID:4335345|
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* Putative zeatin O-glucosyltransferase OscZOG1 regulates root and shoot development and formation of agronomic traits in rice
Length = 1762 bp|
 
Definition = Oryza sativa Japonica Group Os04g0271700, complete gene.|
 
Source = Oryza sativa Japonica Group
 
  
  ORGANISM  Oryza sativa Japonica Group
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===Expression===
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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* We found that OscZOG1 was preferentially expressed in shoot and root meristematic tissues and nascent organs.
            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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* The growth of lateral roots was stimulated in the overexpression lines, but inhibited in RNA interference lines.
            clade; Ehrhartoideae; Oryzeae; Oryza.
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* In shoots, knockdown of OscZOG1 expression by RNA interference significantly improved tillering, panicle branching, grain number per panicle and seed size, which are important agronomic traits for grain yield.
|
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Chromosome = [[:category:Japonica Chromosome 4|Chromosome 4]]|
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===Subcellular localization===
AP = Chromosome 4:11422377..11424138|
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* The resulting fragment was introduced into 35S-GFP-JFH1 vector with the restriction sites XhoI and SpeI to generate a Cterminal GFP fusion construct. The OscZOG1-GFP constructs were transferred into Agrobacterium tumefaciens strain GV3101. Subcellular localization analysis showed that OscZOG1 was found to be localized both in cytoplasm and nucleus.
CDS = 11422462..11423940|
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GCID = <gbrowseImage1>
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You can also add sub-section(s) at will.
name=NC_008397:11422377..11424138
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source=RiceChromosome04
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==Labs working on this gene==
preset=GeneLocation
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* State Key Laboratory of Plant Physiology and Biochemistry, College of Life Sciences, Zhejiang University, Hangzhou, China;
</gbrowseImage1>|
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* Department of Biology - Plant Biology, University of Fribourg, Rue Albert-Gockel 3, CH-1700 Fribourg, Switzerland
GSID = <gbrowseImage2>
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* State Key Laboratory of Plant Genomics, National Center for Plant Gene Research, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.
name=NC_008397:11422377..11424138
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* State Key Laboratory of Rice Biology, China National Rice Research Institute, Chinese Academy of Agricultural Sciences, Hangzhou, China
source=RiceChromosome04
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* State Key Laboratory of Molecular Developmental Biology, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.
preset=GeneLocation
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==References==
</gbrowseImage2>|
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<references>
CDNA = <cdnaseq>atgcccagcgatggcagcttccgcatcgtcctcttcccgttcccggcgcagggccacttctccgccttcctctccctcgccgcccacctccacgacgcccagcccacggccgacatcaccatcgtctccaccccgcgcaacgtggaagacctccgccgccggtcgagctcccagacgcggtacctccggttccacgccctgccgttcgcgccagccgagcacggcctgcccggagacatcgagtcgaccgacgccgtgccgctcctccacttcatcacgctgttcgaggccaccgagtcgcgctcgctacaggacagcttcgacagcttcgtccgtgacttgatcaccgacgccggagcggacggtgccagggtctgcgtcatcgccgaccccttcctcgcgtggacgacagacgtcgcccgccggcgtggcgccgcgcacgccatcttcgtctcctgcggcgcgttcggcagcgtggtgttccactcgctgtggaaccacttgccgcacctgcgtgcgcccggtgacgacgcgttctgcctcccggaccacccggaggttactgtccaccggtcgcagcttccgccttacctactccacgccgacggcacggaccggtggtcggcccaccaccgccggcagacatcggccgggtacgacaccgacgcgattctcatcagcacgatggaggagttggagacgaccgggctgcgcatgctccggaaaacgatgggcgtcccggtctatcccatcggccctctagtgcgtcgccggacggagcactccgatcacatcggtgaccataacgacgatgacgtcaagcggtggctcgacacccgagaagagaggtcagtgctgtacatctcattcgggtctaataactcgctaaggcctgaccagatggttgacctcgccatggcactggagctcaccggcaggccgttcatttgggctatccgtccgccgttcgggtttgacatcgagaccaccaacggccgcgagttcagcgccgagtggttgccggaagggttcgaggagaggatgcgtgccaagaacattgggcttctcatccacgggtgggctccgcaggtgagcatcctcgcgcacgcgtccaccggcgcgttcctgagccactgcggctggaactctgtgctggagagcatggcgcacggcgtgccaatcatcgcgtggccgctcacggcggaccagttcttcaacgcccagatgctggaggagtggggcgcgtgcgtggaggtgtcccgcgggaactggccggactccccggcgctggagcgtgagagggtggtcgaggtcgtggagatggtgatggggattacggcgaaggcggacaagatacgacagagtgtgaagcagattcaggggatgattggtcgaactctggaggacggtggttcgtccaagacagcattggaggaattcttgaagctgcatggtcacattatgctcatgaaatgctga</cdnaseq>|
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* <ref name="ref1">
AA = <aaseq>MPSDGSFRIVLFPFPAQGHFSAFLSLAAHLHDAQPTADITIVST                    PRNVEDLRRRSSSQTRYLRFHALPFAPAEHGLPGDIESTDAVPLLHFITLFEATESRS                    LQDSFDSFVRDLITDAGADGARVCVIADPFLAWTTDVARRRGAAHAIFVSCGAFGSVV                    FHSLWNHLPHLRAPGDDAFCLPDHPEVTVHRSQLPPYLLHADGTDRWSAHHRRQTSAG                    YDTDAILISTMEELETTGLRMLRKTMGVPVYPIGPLVRRRTEHSDHIGDHNDDDVKRW                    LDTREERSVLYISFGSNNSLRPDQMVDLAMALELTGRPFIWAIRPPFGFDIETTNGRE                    FSAEWLPEGFEERMRAKNIGLLIHGWAPQVSILAHASTGAFLSHCGWNSVLESMAHGV                    PIIAWPLTADQFFNAQMLEEWGACVEVSRGNWPDSPALERERVVEVVEMVMGITAKAD                    KIRQSVKQIQGMIGRTLEDGGSSKTALEEFLKLHGHIMLMKC</aaseq>|
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Shang XL, Xie RR, Tian H, Wang QL, Guo FQ. Putative zeatin
DNA = <dnaseqindica>199..1677#atcccaaagcctgtctgccaactgccaagcgcatccttcccagcctcgctccccaccctatcgttcatcctgtccacccagagccattgccacacacacaccgaccggtgctgtcgtgcttcctctcctttcagacaaagcaaaaatttaatttccttccagtggagaacctcgaagtcaaagaacaacgtgttcaccatgcccagcgatggcagcttccgcatcgtcctcttcccgttcccggcgcagggccacttctccgccttcctctccctcgccgcccacctccacgacgcccagcccacggccgacatcaccatcgtctccaccccgcgcaacgtggaagacctccgccgccggtcgagctcccagacgcggtacctccggttccacgccctgccgttcgcgccagccgagcacggcctgcccggagacatcgagtcgaccgacgccgtgccgctcctccacttcatcacgctgttcgaggccaccgagtcgcgctcgctacaggacagcttcgacagcttcgtccgtgacttgatcaccgacgccggagcggacggtgccagggtctgcgtcatcgccgaccccttcctcgcgtggacgacagacgtcgcccgccggcgtggcgccgcgcacgccatcttcgtctcctgcggcgcgttcggcagcgtggtgttccactcgctgtggaaccacttgccgcacctgcgtgcgcccggtgacgacgcgttctgcctcccggaccacccggaggttactgtccaccggtcgcagcttccgccttacctactccacgccgacggcacggaccggtggtcggcccaccaccgccggcagacatcggccgggtacgacaccgacgcgattctcatcagcacgatggaggagttggagacgaccgggctgcgcatgctccggaaaacgatgggcgtcccggtctatcccatcggccctctagtgcgtcgccggacggagcactccgatcacatcggtgaccataacgacgatgacgtcaagcggtggctcgacacccgagaagagaggtcagtgctgtacatctcattcgggtctaataactcgctaaggcctgaccagatggttgacctcgccatggcactggagctcaccggcaggccgttcatttgggctatccgtccgccgttcgggtttgacatcgagaccaccaacggccgcgagttcagcgccgagtggttgccggaagggttcgaggagaggatgcgtgccaagaacattgggcttctcatccacgggtgggctccgcaggtgagcatcctcgcgcacgcgtccaccggcgcgttcctgagccactgcggctggaactctgtgctggagagcatggcgcacggcgtgccaatcatcgcgtggccgctcacggcggaccagttcttcaacgcccagatgctggaggagtggggcgcgtgcgtggaggtgtcccgcgggaactggccggactccccggcgctggagcgtgagagggtggtcgaggtcgtggagatggtgatggggattacggcgaaggcggacaagatacgacagagtgtgaagcagattcaggggatgattggtcgaactctggaggacggtggttcgtccaagacagcattggaggaattcttgaagctgcatggtcacattatgctcatgaaatgctgacgccgagagaaataattttctgttttagcaatttgcccaaccttgaaacgtggtgcctgaaataacctattatgtgttcttgaat</dnaseqindica>|
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O-glucosyltransferase OscZOG1 regulates root and shoot development and formation
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001058881.1 RefSeq:Os04g0271700]|
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of agronomic traits in rice. J Integr Plant Biol. 2016 Jul;58(7):627-41. doi:
}}
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10.1111/jipb.12444. Epub 2016 Jan 2. PubMed PMID: 26507364.
[[Category:Genes]]
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</ref>
[[Category:Japonica mRNA]]
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</references>
[[Category:Oryza Sativa Japonica Group]]
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[[Category:Japonica Genes]]
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[[Category:Japonica Chromosome 4]]
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==Structured Information==
[[Category:Chromosome 4]]
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    [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 4]]

Latest revision as of 10:17, 18 January 2018

The rice Os04g0271700 was reported as OscZOG1 in 2015 [1] by researchers from China.

Annotated Information

Function

  • Putative zeatin O-glucosyltransferase OscZOG1 regulates root and shoot development and formation of agronomic traits in rice

Expression

  • We found that OscZOG1 was preferentially expressed in shoot and root meristematic tissues and nascent organs.
  • The growth of lateral roots was stimulated in the overexpression lines, but inhibited in RNA interference lines.
  • In shoots, knockdown of OscZOG1 expression by RNA interference significantly improved tillering, panicle branching, grain number per panicle and seed size, which are important agronomic traits for grain yield.

Subcellular localization

  • The resulting fragment was introduced into 35S-GFP-JFH1 vector with the restriction sites XhoI and SpeI to generate a Cterminal GFP fusion construct. The OscZOG1-GFP constructs were transferred into Agrobacterium tumefaciens strain GV3101. Subcellular localization analysis showed that OscZOG1 was found to be localized both in cytoplasm and nucleus.

You can also add sub-section(s) at will.

Labs working on this gene

  • State Key Laboratory of Plant Physiology and Biochemistry, College of Life Sciences, Zhejiang University, Hangzhou, China;
  • Department of Biology - Plant Biology, University of Fribourg, Rue Albert-Gockel 3, CH-1700 Fribourg, Switzerland
  • State Key Laboratory of Plant Genomics, National Center for Plant Gene Research, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.
  • State Key Laboratory of Rice Biology, China National Rice Research Institute, Chinese Academy of Agricultural Sciences, Hangzhou, China
  • State Key Laboratory of Molecular Developmental Biology, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.

References

  1. Shang XL, Xie RR, Tian H, Wang QL, Guo FQ. Putative zeatin O-glucosyltransferase OscZOG1 regulates root and shoot development and formation of agronomic traits in rice. J Integr Plant Biol. 2016 Jul;58(7):627-41. doi: 10.1111/jipb.12444. Epub 2016 Jan 2. PubMed PMID: 26507364.


Structured Information