Difference between revisions of "Os05g0276100"

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(Created page with "{{JaponicaGene| GeneName = Os05g0276100| Description = Similar to Na+/H+ exchangeing protein-like (Cation/H+ exchanger)| Version = NM_001061611.1 GI:115462952 GeneID:433827...")
 
 
(2 intermediate revisions by 2 users not shown)
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{{JaponicaGene|
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The rice '''''Os05g0276100''''' was reported as '''''OsCHX14''''' in 2014 <ref name="ref1" /> by researchers from Netherlands, UK and China.  
GeneName = Os05g0276100|
 
Description = Similar to Na+/H+ exchangeing protein-like (Cation/H+ exchanger)|
 
Version = NM_001061611.1 GI:115462952 GeneID:4338277|
 
Length = 2849 bp|
 
Definition = Oryza sativa Japonica Group Os05g0276100, complete gene.|
 
Source = Oryza sativa Japonica Group
 
  
  ORGANISM  Oryza sativa Japonica Group
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==Annotated Information==
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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===Gene Symbol===
            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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*'''''Os04g0459000''''' '''''<=>''''' '''''OsCHX14'''''
            clade; Ehrhartoideae; Oryzeae; Oryza.
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===Function===
|
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* OsCHX14 may play an important role in K+ homeostasis during flowering in rice.
Chromosome = [[:category:Japonica Chromosome 5|Chromosome 5]]|
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AP = Chromosome 5:11346123..11348971|
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===Expression===
CDS = 11346273..11346467,11346587..11348764|
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* Expression profiling confirmed that among 17 CHX genes in rice, OsCHX14 was the only member that showed an expression polymorphism, not only in osjar1 mutants but also in RNAi (RNA interference) lines of OsCOI1, another key member of the JA signaling pathway. This suggests that the expression of OsCHX14 is regulated by the JA signaling pathway.
GCID = <gbrowseImage1>
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* Promoter–b-glucuronidase (GUS) analysis of transgenic rice revealed that OsCHX14 is mainly expressed in lodicules and the region close by throughout the flowering process.
name=NC_008398:11346123..11348971
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source=RiceChromosome05
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===Subcellular localization===
preset=GeneLocation
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* OsCHX14 is localized to the endoplasmic reticulum. The OsCHX14 ORF was cloned in-frame with a GFP reporter gene and transiently expressed in Arabidopsis root protoplasts together with an ER marker tagged with an RFP reporter.
</gbrowseImage1>|
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GSID = <gbrowseImage2>
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You can also add sub-section(s) at will.
name=NC_008398:11346123..11348971
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source=RiceChromosome05
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==Labs working on this gene==
preset=GeneLocation
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* State Key Laboratory of Plant Physiology and Biochemistry, College of Life Sciences, Zhejiang University, Hangzhou, China;
</gbrowseImage2>|
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* Department of Biology - Plant Biology, University of Fribourg, Rue Albert-Gockel 3, CH-1700 Fribourg, Switzerland
CDNA = <cdnaseq>atggctcctgaggcggcggcggcggccttgaagccgatgaaggcaacgtcggacggcgtgttccagggggaggaccccctggaagcggccctgcctctggccatcgtgcagatttgcatcgtcgtcgtgctcacccgcgtgctcgccttcttcctccgcccgctccggcagccgcgcgtcatcgcggagatcatcggcggcatcatgctcggcccgtccgcgatcggccggaacagcgcgttcatcaacacggtgttccccaagcagagcctcacggtgctcgacaccctcgccaacatcggcctcctcttcttcctcttcctcgtcggcctcgagctcgacctccgcgccatccgccgcacgggagctggcgcgctcgccatcgccgtcgccggcatctccctccccttcgtcctcgggatcggcacctccgtcgtcctccagaacaccgtcaaccgcggcgtccccacggggcccttcctcgtcttcatgggcgtcgccctctccatcaccgcgttcccggtgctggcgcgcatcctcgccgagctcaagctgctcaccaccgacctcggccgcatggccatgtccgcggcggccgtgaacgacgtcgccgcgtggatactcctcgcgctcgccatcgcgttgtcgggctccggctcgcctttcgtgtcgctctgggtgctcctcagcggcgtcggcttcgtcctctcgtcgttcttcttcatccggccgctgctctcgtggatggcgcggcgatcccccgagggcgagcccgtgaaggagctatacatatgcacgacgctcaccatcgtgctcgccgccggcttcatcaccgacaccatcggcatccacgcgctgttcggcgccttcatcgtcggcatcatcgtgcccaaggaagggcccttcgctggcgtcctcctggagaaggtggaggacctcatctctggcctcttcctgccgctctacttcgtgtcgagtggcctcaagaccaacgtcctgaccatcaagggcggggactcgtgggggctcctcgtgctcgtcgtcgcgacggcgtgcatcggcaagatcggcggcacagtgctcgcgtcgctcatcgtgcgtgtgccgctccgtgaggcggtgacgctcggggtgctgatgaacaccaaggggctcgtggagctcatcgtgctcaacatcggcaaggaccggcacgtcctcaacgacgagaccttcgccatcctcgtgctcatggcgctcataaacaccttcatcaccacgccgctggtgatggccatctacaagccggcgcggcgcgcccccccgtacaagaaccgcgccgtccagcgcccgaaccccgacgacgagctccgcatgatggtgtgcttccacagcacgcgaaacatccccaccatgatcaacctcatggagtcgtcgcgtgggacgcggcggcgcggcatcaccgtgtacgccatgcacctcgtcgagctctcggagcggtcgtccgccatcaacatggtccacaaggcgcggcgcaacgggatgccgttctggaaccggcggcgcaacggggacggcgaccagctcgtcgtcgcgttcgagacgtaccagcagctgagccacgtgtccattcgcgccatgacggccatctccgacctccacaccatccacgaggacgtggtcaccagcgcgcaccagaagcgcgccgcgctcatcgtgctccccttccacaagctccaccagatggacggccacatggagtccctcggcgacgagtaccagcacatcaaccagcgggtgctccaccacgcgccgtgctccgtcggcatcctcgtcgaccgcggcctcggcggcgccgcgcaggtcgccgccagcgacgtgtcctacaacatcgtcgtcctcttcttcggcggccgggacgaccgcgaggccctctcctacgccacgcgcatggtcgagcacccgggcatcgcactccacgtgatacgcttcgtcccagagtccggcggcggcggcgcgaacgacaaagccgcggcggacgatgcgttcctcgcagagttccgcggcaaagtcgccggcgggaacgactccatccggtacgaggagaggacgtccagagggaaggcggacgtggtggaggcgatcaaggcgatgggtccgaccaacctgttcctcgttggacaggggtcgccgtgcgcgccgctgatggaaccgagcgctgagtgcccggagctcgggccggtggggagctacctggcgatgccggacttctcgacggtggcgtcggtgctggtgatgaagcagtacgacccgacggcggagcactacgaactcgtcgaggaggtcgcggacaccgccgtggacatcgacacaccggggcctcgtagagggtga</cdnaseq>|
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* State Key Laboratory of Plant Genomics, National Center for Plant Gene Research, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.
AA = <aaseq>MAPEAAAAALKPMKATSDGVFQGEDPLEAALPLAIVQICIVVVL                    TRVLAFFLRPLRQPRVIAEIIGGIMLGPSAIGRNSAFINTVFPKQSLTVLDTLANIGL                    LFFLFLVGLELDLRAIRRTGAGALAIAVAGISLPFVLGIGTSVVLQNTVNRGVPTGPF                    LVFMGVALSITAFPVLARILAELKLLTTDLGRMAMSAAAVNDVAAWILLALAIALSGS                    GSPFVSLWVLLSGVGFVLSSFFFIRPLLSWMARRSPEGEPVKELYICTTLTIVLAAGF                    ITDTIGIHALFGAFIVGIIVPKEGPFAGVLLEKVEDLISGLFLPLYFVSSGLKTNVLT                    IKGGDSWGLLVLVVATACIGKIGGTVLASLIVRVPLREAVTLGVLMNTKGLVELIVLN                    IGKDRHVLNDETFAILVLMALINTFITTPLVMAIYKPARRAPPYKNRAVQRPNPDDEL                    RMMVCFHSTRNIPTMINLMESSRGTRRRGITVYAMHLVELSERSSAINMVHKARRNGM                    PFWNRRRNGDGDQLVVAFETYQQLSHVSIRAMTAISDLHTIHEDVVTSAHQKRAALIV                    LPFHKLHQMDGHMESLGDEYQHINQRVLHHAPCSVGILVDRGLGGAAQVAASDVSYNI                    VVLFFGGRDDREALSYATRMVEHPGIALHVIRFVPESGGGGANDKAAADDAFLAEFRG                    KVAGGNDSIRYEERTSRGKADVVEAIKAMGPTNLFLVGQGSPCAPLMEPSAECPELGP                    VGSYLAMPDFSTVASVLVMKQYDPTAEHYELVEEVADTAVDIDTPGPRRG</aaseq>|
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* State Key Laboratory of Rice Biology, China National Rice Research Institute, Chinese Academy of Agricultural Sciences, Hangzhou, China
DNA = <dnaseqindica>151..345#465..2642#gtctttctgctggccaccaccctccccgtcttccttggagataggtggcaggtggctagagagggatcaagggtaggagggagaggaacggatcgcgcgcgcgcgacacgtacaccacacacatccactcacggcacggtacggccggccatggctcctgaggcggcggcggcggccttgaagccgatgaaggcaacgtcggacggcgtgttccagggggaggaccccctggaagcggccctgcctctggccatcgtgcagatttgcatcgtcgtcgtgctcacccgcgtgctcgccttcttcctccgcccgctccggcagccgcgcgtcatcgcggagatcatcgtacgtcggttcttgtgaataattctggtcgctttcgatcgatcgatgtgttcgtggaagctaggttttgattggtttctcgtggggtttggtttgatctgatggtatggagagttcagggcggcatcatgctcggcccgtccgcgatcggccggaacagcgcgttcatcaacacggtgttccccaagcagagcctcacggtgctcgacaccctcgccaacatcggcctcctcttcttcctcttcctcgtcggcctcgagctcgacctccgcgccatccgccgcacgggagctggcgcgctcgccatcgccgtcgccggcatctccctccccttcgtcctcgggatcggcacctccgtcgtcctccagaacaccgtcaaccgcggcgtccccacggggcccttcctcgtcttcatgggcgtcgccctctccatcaccgcgttcccggtgctggcgcgcatcctcgccgagctcaagctgctcaccaccgacctcggccgcatggccatgtccgcggcggccgtgaacgacgtcgccgcgtggatactcctcgcgctcgccatcgcgttgtcgggctccggctcgcctttcgtgtcgctctgggtgctcctcagcggcgtcggcttcgtcctctcgtcgttcttcttcatccggccgctgctctcgtggatggcgcggcgatcccccgagggcgagcccgtgaaggagctatacatatgcacgacgctcaccatcgtgctcgccgccggcttcatcaccgacaccatcggcatccacgcgctgttcggcgccttcatcgtcggcatcatcgtgcccaaggaagggcccttcgctggcgtcctcctggagaaggtggaggacctcatctctggcctcttcctgccgctctacttcgtgtcgagtggcctcaagaccaacgtcctgaccatcaagggcggggactcgtgggggctcctcgtgctcgtcgtcgcgacggcgtgcatcggcaagatcggcggcacagtgctcgcgtcgctcatcgtgcgtgtgccgctccgtgaggcggtgacgctcggggtgctgatgaacaccaaggggctcgtggagctcatcgtgctcaacatcggcaaggaccggcacgtcctcaacgacgagaccttcgccatcctcgtgctcatggcgctcataaacaccttcatcaccacgccgctggtgatggccatctacaagccggcgcggcgcgcccccccgtacaagaaccgcgccgtccagcgcccgaaccccgacgacgagctccgcatgatggtgtgcttccacagcacgcgaaacatccccaccatgatcaacctcatggagtcgtcgcgtgggacgcggcggcgcggcatcaccgtgtacgccatgcacctcgtcgagctctcggagcggtcgtccgccatcaacatggtccacaaggcgcggcgcaacgggatgccgttctggaaccggcggcgcaacggggacggcgaccagctcgtcgtcgcgttcgagacgtaccagcagctgagccacgtgtccattcgcgccatgacggccatctccgacctccacaccatccacgaggacgtggtcaccagcgcgcaccagaagcgcgccgcgctcatcgtgctccccttccacaagctccaccagatggacggccacatggagtccctcggcgacgagtaccagcacatcaaccagcgggtgctccaccacgcgccgtgctccgtcggcatcctcgtcgaccgcggcctcggcggcgccgcgcaggtcgccgccagcgacgtgtcctacaacatcgtcgtcctcttcttcggcggccgggacgaccgcgaggccctctcctacgccacgcgcatggtcgagcacccgggcatcgcactccacgtgatacgcttcgtcccagagtccggcggcggcggcgcgaacgacaaagccgcggcggacgatgcgttcctcgcagagttccgcggcaaagtcgccggcgggaacgactccatccggtacgaggagaggacgtccagagggaaggcggacgtggtggaggcgatcaaggcgatgggtccgaccaacctgttcctcgttggacaggggtcgccgtgcgcgccgctgatggaaccgagcgctgagtgcccggagctcgggccggtggggagctacctggcgatgccggacttctcgacggtggcgtcggtgctggtgatgaagcagtacgacccgacggcggagcactacgaactcgtcgaggaggtcgcggacaccgccgtggacatcgacacaccggggcctcgtagagggtgatgcccttagtcgtaagtcgtaattaacaggcatatacttctactaatacaaattgtgtaatatgatagtgcaatttaattgtagacgtattttcatccctcaggaggatggaccttgatcctccaatgtgtttttacatctgttgtacacttgtaaaatacaatagttctggaattttatgaaagcacttgacacaatatagtgtat</dnaseqindica>|
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* State Key Laboratory of Molecular Developmental Biology, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001061611.1 RefSeq:Os05g0276100]|
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==References==
}}
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<references>
[[Category:Genes]]
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* <ref name="ref1">
[[Category:Japonica mRNA]]
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Chen Y, Ma J, Miller AJ, Luo B, Wang M, Zhu Z, Ouwerkerk PB. OsCHX14 is
[[Category:Oryza Sativa Japonica Group]]
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Involved in the K+ Homeostasis in Rice (Oryza sativa) Flowers. Plant Cell
[[Category:Japonica Genes]]
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Physiol. 2016 Jul;57(7):1530-1543. Epub 2016 May 6. PubMed PMID: 27903806.
[[Category:Japonica Chromosome 5]]
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</ref>
[[Category:Chromosome 5]]
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</references>
 +
 
 +
==Structured Information==
 +
    [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 5]]

Latest revision as of 10:39, 18 January 2018

The rice Os05g0276100 was reported as OsCHX14 in 2014 [1] by researchers from Netherlands, UK and China.

Annotated Information

Gene Symbol

  • Os04g0459000 <=> OsCHX14

Function

  • OsCHX14 may play an important role in K+ homeostasis during flowering in rice.

Expression

  • Expression profiling confirmed that among 17 CHX genes in rice, OsCHX14 was the only member that showed an expression polymorphism, not only in osjar1 mutants but also in RNAi (RNA interference) lines of OsCOI1, another key member of the JA signaling pathway. This suggests that the expression of OsCHX14 is regulated by the JA signaling pathway.
  • Promoter–b-glucuronidase (GUS) analysis of transgenic rice revealed that OsCHX14 is mainly expressed in lodicules and the region close by throughout the flowering process.

Subcellular localization

  • OsCHX14 is localized to the endoplasmic reticulum. The OsCHX14 ORF was cloned in-frame with a GFP reporter gene and transiently expressed in Arabidopsis root protoplasts together with an ER marker tagged with an RFP reporter.

You can also add sub-section(s) at will.

Labs working on this gene

  • State Key Laboratory of Plant Physiology and Biochemistry, College of Life Sciences, Zhejiang University, Hangzhou, China;
  • Department of Biology - Plant Biology, University of Fribourg, Rue Albert-Gockel 3, CH-1700 Fribourg, Switzerland
  • State Key Laboratory of Plant Genomics, National Center for Plant Gene Research, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.
  • State Key Laboratory of Rice Biology, China National Rice Research Institute, Chinese Academy of Agricultural Sciences, Hangzhou, China
  • State Key Laboratory of Molecular Developmental Biology, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.

References

  1. Chen Y, Ma J, Miller AJ, Luo B, Wang M, Zhu Z, Ouwerkerk PB. OsCHX14 is Involved in the K+ Homeostasis in Rice (Oryza sativa) Flowers. Plant Cell Physiol. 2016 Jul;57(7):1530-1543. Epub 2016 May 6. PubMed PMID: 27903806.

Structured Information