Difference between revisions of "Os06g0693700"

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Please input one-sentence summary here.
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The rice '''''Os06g0693700''''' was reported as '''''OsSIDP366''''' in 2015 <ref name="ref1" /> by researchers from China and USA.  
  
 
==Annotated Information==
 
==Annotated Information==
 
===Function===
 
===Function===
Please input function information here.
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* OsSIDP366 may function as a regulator of the PBs/SGs and positively regulate salt and drought resistance in rice.
  
 
===Expression===
 
===Expression===
Please input expression information here.
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* Transgenic rice plants overexpressing OsSIDP366 showed enhanced drought and salinity tolerance and reduced water loss as compared to that in the control, whereas plants with downregulated OsSIDP366 expression levels using RNA interference (RNAi) were more sensitive to salinity and drought treatments.  
 
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* The sensitivity to abscisic acid (ABA) treatment was not changed in OsSIDP366-overexpressing plants, and OsSIDP366 expression was not affected in ABAdeficient mutants.
===Evolution===
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* Digital gene expression (DGE) profile analysis indicated that stress-related genes such as SNAC1, OsHAK5 and PRs were upregulated in OsSIDP366-overexpressing plants.
Please input evolution information here.
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===Subcellular localization===
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* Subcellular localization analysis revealed that OsSIDP366 is presented in the cytoplasmic foci that colocalized with protein markers for both processing bodies (PBs) and stress granules (SGs) in rice protoplasts.  
  
 
You can also add sub-section(s) at will.
 
You can also add sub-section(s) at will.
  
 
==Labs working on this gene==
 
==Labs working on this gene==
Please input related labs here.
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* State Key Laboratory of Plant Physiology and Biochemistry, College of Life Sciences, Zhejiang University, Hangzhou, China;
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* Department of Biology - Plant Biology, University of Fribourg, Rue Albert-Gockel 3, CH-1700 Fribourg, Switzerland
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* State Key Laboratory of Plant Genomics, National Center for Plant Gene Research, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.
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* State Key Laboratory of Rice Biology, China National Rice Research Institute, Chinese Academy of Agricultural Sciences, Hangzhou, China
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* State Key Laboratory of Molecular Developmental Biology, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.
  
 
==References==
 
==References==
Please input cited references here.
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<references>
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* <ref name="ref1">
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Guo C, Luo C, Guo L, Li M, Guo X, Zhang Y, Wang L, Chen L. OsSIDP366, a
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DUF1644 gene, positively regulates responses to drought and salt stresses in
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rice. J Integr Plant Biol. 2016 May;58(5):492-502. doi: 10.1111/jipb.12376. Epub
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2015 Sep 25. PubMed PMID: 26172270.
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</ref>
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</references>
  
 
==Structured Information==
 
==Structured Information==
{{JaponicaGene|
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    [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 6]]
GeneName = Os06g0693700|
 
Description = Protein of unknown function DUF1644 family protein|
 
Version = NM_001064971.1 GI:115469673 GeneID:4341921|
 
Length = 3353 bp|
 
Definition = Oryza sativa Japonica Group Os06g0693700, complete gene.|
 
Source = Oryza sativa Japonica Group
 
 
 
  ORGANISM  Oryza sativa Japonica Group
 
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
 
            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
 
            clade; Ehrhartoideae; Oryzeae; Oryza.
 
|
 
Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|
 
AP = Chromosome 6:29839590..29842942|
 
CDS = 29840661..29841589,29842211..29842232|
 
GCID = <gbrowseImage1>
 
name=NC_008399:29839590..29842942
 
source=RiceChromosome06
 
preset=GeneLocation
 
</gbrowseImage1>|
 
GSID = <gbrowseImage2>
 
name=NC_008399:29839590..29842942
 
source=RiceChromosome06
 
preset=GeneLocation
 
</gbrowseImage2>|
 
CDNA = <cdnaseq>atggggtcaggaaacctgatgatgaagaaggtggtgaggcccagctcttttgatttcgacatacagcttgataaaagttggacagaggatgttacttgcccaatctgtcttgattaccctcacaatgctgtcctgctaagatgtacatcttatgagaaaggttgcaggccatttgtctgtgatacagatcaaacccgctcaaactgtcttgagaggtttaaaggtgcatatgagctccctgccaatatgaaagtttcaaccattgcggtggctcctcttgatagtatccatattgtggctcctaatgtgaacaaccgcccaagctgcccattgtgtagaggagatgtcattggatggattgttatcggtgaggctcgtctacatcttaaccagaagaaaagatgctgtgaagaggattgttgttcattcgttggcaacttcaatgaacttcagaagcacacacaacaaaagcatccagactcacgcccttcggaaattgatcctgctaggcaagttgattgggagaacttccagcaatcttctgatattgttgatgtgctgagcacgattcatgcacaagttcctaatggaattgttctgggagattatgtcattgagtatggggatgatgaaactggagaagaatatgaagttttcaggcgggtcagaaggcactggtggtcttttatgtttttcaggggattctctagatcttcaagaagacgaagaagagcaagggcaagggaaagaagaggcagtggaaggaggaacagcaatcaggcacatctcgaaagctttaacctcgaggttcccacacaatctgttgacttgagagaaatcagatttgatgaaattgatgatgaatacatagtcacaggggccatacctagtattgcaacacctggaagaatggctagtttccattacagggatacaagatatggacgataa</cdnaseq>|
 
AA = <aaseq>MGSGNLMMKKVVRPSSFDFDIQLDKSWTEDVTCPICLDYPHNAV                    LLRCTSYEKGCRPFVCDTDQTRSNCLERFKGAYELPANMKVSTIAVAPLDSIHIVAPN                    VNNRPSCPLCRGDVIGWIVIGEARLHLNQKKRCCEEDCCSFVGNFNELQKHTQQKHPD                    SRPSEIDPARQVDWENFQQSSDIVDVLSTIHAQVPNGIVLGDYVIEYGDDETGEEYEV                    FRRVRRHWWSFMFFRGFSRSSRRRRRARARERRGSGRRNSNQAHLESFNLEVPTQSVD                    LREIRFDEIDDEYIVTGAIPSIATPGRMASFHYRDTRYGR</aaseq>|
 
DNA = <dnaseqindica>1072..2000#2622..2643#agcggcggcagcatcttctcttccccccctcgcagcctcgcgtctcgactcccttttcaaccctcctcccctccagtctccttccctctcttctcgtctcctctcccaccaccaccgcgccacctaccctcgccgcagcggcagccgcggtacgtctcctctccccctcctcctcctcgtcttcatccccttctcgccagatttttttggttcgattttgacttttttttttctcggattctggcgatcgatggcttcatgtgtttgtgtgtggggtttgatttgggttctcgggtgtagcgggagtagttgattttgggggagtttgttcgttcggtgtggatgttacggagctcgggggtttagtctcgggagtgtgctgatgatgaggtgtaattttggtgggggctggcgatctcctgatctcgtttgcatgtggttcgtgtgcccgaggttagattggattggaagagctggttgggaatttggggtttggggtctgatcagtttccagatcgagttttatggggggttgctttgcaatttttttactggtatttgtatttggggaatggaaattttggtttggattctcttatttgaattaggtgtagttcccatgcgattaactatagagctcgttctgtagttgtgcggattgctttcgcttgtgttgcatcctggaggagactggtttttggtggatttgaccaggtgggtattgtagttttgggggatttagggaagatgatatgaacgctgagtagttgaatttgttgggagaaggcttactaattcaaccttttggcaatcatatgggttgatgtaggagagattctagtttgtgcagttcaaaacaaccagttggaaccaaatatccattgacatgattctgtgataccgttaaactcatgttggatcgatggaaatgctaaactttgttgtgtattggaaatatactatgtttagaaatgatgagtctcaaactaatctattttcatcttgatgtcatgcaggttttaatgaaaagtagcacttgttaaagctactagttttgttagaaaatctaacatggggtcaggaaacctgatgatgaagaaggtggtgaggcccagctcttttgatttcgacatacagcttgataaaagttggacagaggatgttacttgcccaatctgtcttgattaccctcacaatgctgtcctgctaagatgtacatcttatgagaaaggttgcaggccatttgtctgtgatacagatcaaacccgctcaaactgtcttgagaggtttaaaggtgcatatgagctccctgccaatatgaaagtttcaaccattgcggtggctcctcttgatagtatccatattgtggctcctaatgtgaacaaccgcccaagctgcccattgtgtagaggagatgtcattggatggattgttatcggtgaggctcgtctacatcttaaccagaagaaaagatgctgtgaagaggattgttgttcattcgttggcaacttcaatgaacttcagaagcacacacaacaaaagcatccagactcacgcccttcggaaattgatcctgctaggcaagttgattgggagaacttccagcaatcttctgatattgttgatgtgctgagcacgattcatgcacaagttcctaatggaattgttctgggagattatgtcattgagtatggggatgatgaaactggagaagaatatgaagttttcaggcgggtcagaaggcactggtggtcttttatgtttttcaggggattctctagatcttcaagaagacgaagaagagcaagggcaagggaaagaagaggcagtggaaggaggaacagcaatcaggcacatctcgaaagctttaacctcgaggttcccacacaatctgttgacttgagagaaatcagatttgatgaaattgatgatgaatacatagtcacaggggccatacctagtattgcaacacctggaagaatggctagtttccattacaggtctgtagaaacagtctactgttaatcttccttagttattggagctatatctatcatttttgtaagaacaaagaacacatgctagtccaatgaaaaaatattcaggttgtagagaatatggaatacaaacataccgcacttttggaatcttcttgttcctgatgcacttacttttacagtacctacttgagctgccatgttatgcatagaaaatacagccgtttacattttttactctttgtcatgttccctgttttcttcttgatggcattatgcatagtgaaagcatctttgaggtagctccttttaaccgatctattgcatatttatgcgctaggtgttaagacttttggtatgtttaggtggggttagtaaagtttcaggagaggattttagtgcctgagacatgcatgtgcagtacaatactgaaaacatgaggctacctaccctaaaattttgatttcattgtggagaaaacaatttgatactaccttccaaattcagcatgagatgtaaataatatagttcatgtttttctttaaatttaaaactctaaagcatgacgctgtccttgtttcatttctgacgagttgatatatgatgttctcttgatggatccagggatacaagatatggacgataaatggtgtacttgtaggaccagctattaaaaaggagcatagtctttatgtgatgcagcgatcatgagaacattgtacctctgctcatttacatttcttttcgacctctatcgttgctaggtgctgccctgccccccagcctaaacttcctgtgcatataaattagcaacagaactctccattgatcgttcgcaacaggtttcatgattctagtttcattttgtatatatccagcacccatctctatagcgatgttggtgaaaacttctgtttttggaaaatgctggaaaaatgctgcttggatgtagcagacttcataggacattcccagaacaagattgagttcattcccagtggtttgcctggagttgcttctgtttcgatgagtagacagttacagttttcagttgtacaactgaaaactgcaactgccactgccactgccactggtcaattgctcaaaacggccttagccacaacagttacaagatttctgctgcttgacccgtgaacagccacagtggctggcagctttgagctcacgacgcatcaggcaagcgtctggaaagagtgctgtgctgattactgaagaaaagttgttctttgcttgtgatgatagcgtttgctgatgtacttgcgtgttgaaggcacccaaaagcaaaccaaaccagcaatctctgatcgatctataatatgcagtgtgttgtggttt</dnaseqindica>|
 
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001064971.1 RefSeq:Os06g0693700]|
 
}}
 
[[Category:Genes]]
 
[[Category:Japonica mRNA]]
 
[[Category:Oryza Sativa Japonica Group]]
 
[[Category:Japonica Genes]]
 
[[Category:Japonica Chromosome 6]]
 
[[Category:Chromosome 6]]
 

Latest revision as of 13:06, 18 January 2018

The rice Os06g0693700 was reported as OsSIDP366 in 2015 [1] by researchers from China and USA.

Annotated Information

Function

  • OsSIDP366 may function as a regulator of the PBs/SGs and positively regulate salt and drought resistance in rice.

Expression

  • Transgenic rice plants overexpressing OsSIDP366 showed enhanced drought and salinity tolerance and reduced water loss as compared to that in the control, whereas plants with downregulated OsSIDP366 expression levels using RNA interference (RNAi) were more sensitive to salinity and drought treatments.
  • The sensitivity to abscisic acid (ABA) treatment was not changed in OsSIDP366-overexpressing plants, and OsSIDP366 expression was not affected in ABAdeficient mutants.
  • Digital gene expression (DGE) profile analysis indicated that stress-related genes such as SNAC1, OsHAK5 and PRs were upregulated in OsSIDP366-overexpressing plants.

Subcellular localization

  • Subcellular localization analysis revealed that OsSIDP366 is presented in the cytoplasmic foci that colocalized with protein markers for both processing bodies (PBs) and stress granules (SGs) in rice protoplasts.

You can also add sub-section(s) at will.

Labs working on this gene

  • State Key Laboratory of Plant Physiology and Biochemistry, College of Life Sciences, Zhejiang University, Hangzhou, China;
  • Department of Biology - Plant Biology, University of Fribourg, Rue Albert-Gockel 3, CH-1700 Fribourg, Switzerland
  • State Key Laboratory of Plant Genomics, National Center for Plant Gene Research, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.
  • State Key Laboratory of Rice Biology, China National Rice Research Institute, Chinese Academy of Agricultural Sciences, Hangzhou, China
  • State Key Laboratory of Molecular Developmental Biology, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.

References

  1. Guo C, Luo C, Guo L, Li M, Guo X, Zhang Y, Wang L, Chen L. OsSIDP366, a DUF1644 gene, positively regulates responses to drought and salt stresses in rice. J Integr Plant Biol. 2016 May;58(5):492-502. doi: 10.1111/jipb.12376. Epub 2015 Sep 25. PubMed PMID: 26172270.

Structured Information