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| − | {{JaponicaGene|
| + | The rice '''''Os07g0682400''''' was reported as '''''OsC3H53''''' in 2012 <ref name="ref1" /> by researchers from China. |
| − | GeneName = Os07g0682400|
| + | ==Annotated Information== |
| − | Description = Zinc finger, CCCH-type domain containing protein|
| + | ===Gene Symbol=== |
| − | Version = NM_001067195.1 GI:115474122 GeneID:4344312|
| + | *'''''Os07g0682400''''' '''''<=>''''' '''''OsC3H53''''' |
| − | Length = 4064 bp|
| + | ===Function=== |
| − | Definition = Oryza sativa Japonica Group Os07g0682400, complete gene.|
| + | * Genes in the CCCH family encode zinc finger proteins containing the motif with three cysteines and one histidine residues. <ref name="ref1" /> <ref name="ref2" /> |
| − | Source = Oryza sativa Japonica Group
| + | * CCCH-type zinc finger proteins have essential functions in various developmental processes in plants. |
| − | | + | * CCCH family genes have been known to play important roles in RNA processing as RNA-binding proteins. |
| − | ORGANISM Oryza sativa Japonica Group
| + | * CCCH-type zinc finger proteins are RNA-binding proteins by virtue of the ability of their defining motif to directly bind to RNA, whereas most of the other zinc finger families are confirmed as DNA-binding or protein-binding proteins. |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | ===Expression=== |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| + | * The expression profile indicated that most members of this subfamily are regulated by abiotic or biotic stresses, suggesting that they could have an effective role in stress tolerance. |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| + | ===Evolution=== |
| − | |
| + | * A typical CCCH protein usually contains 1–6 CCCH-type zinc finger motifs. |
| − | Chromosome = [[:category:Japonica Chromosome 7|Chromosome 7]]|
| + | * Based on the different numbers of amino acid spacers between cysteines and histidines in the CCCH motif, a consensus sequence for these was defined as C-X 4–15 -C-X 4–6 -C-X 3 -H (X represents any amino acid) based on the whole-genome analysis of rice and Arabidopsis CCCH proteins <ref name="ref1" /> <ref name="ref2" /> |
| − | AP = Chromosome 7:29588895..29592958|
| + | You can also add sub-section(s) at will. |
| − | CDS = 29589889..29589922,29590038..29590268,29590422..29590536,29590634..29590873,29590959..29591052<br>,29591136..29591322,29591400..29591576,29591657..29592627|
| + | ==Labs working on this gene== |
| − | GCID = <gbrowseImage1>
| + | * State Key Laboratory of Crop Biology, College of Life Sciences, Shandong Agricultural University, Taian, Shandong 271018, P.R. China |
| − | name=NC_008400:29588895..29592958
| + | ==References== |
| − | source=RiceChromosome07
| + | <references> |
| − | preset=GeneLocation
| + | * <ref name="ref1"> |
| − | </gbrowseImage1>| | + | Wang D, Guo Y, Wu C, Yang G, Li Y, Zheng C. Genome-wide analysis of CCCH zinc |
| − | GSID = <gbrowseImage2>
| + | finger family in Arabidopsis and rice. BMC Genomics. 2008 Jan 27;9:44. doi: |
| − | name=NC_008400:29588895..29592958
| + | 10.1186/1471-2164-9-44. PubMed PMID: 18221561; PubMed Central PMCID: PMC2267713. |
| − | source=RiceChromosome07
| + | </ref> |
| − | preset=GeneLocation
| + | * <ref name="ref2"> |
| − | </gbrowseImage2>| | + | Peng X, Zhao Y, Cao J, Zhang W, Jiang H, Li X, Ma Q, Zhu S, Cheng B. CCCH-type |
| − | CDNA = <cdnaseq>atggacgcctacgaggcgaccaaggtggtgttctcgcggatccaggcgctcgacccggaccacgcagccaagatcatgggcttcctcctcatccaggaccatggcgagaaggagatgatacgcctcgctttcggccccgaggcgctgctccacaccgtcatggccaaggccaggaaggagctcggcctcctcccggcgtccgggcccgggacgcccacctccgtggcggcggccgcggccgccgcccactcgcccttcatgctctcgcggcagaactccgggcgctgcggcaccgcgccctcgccgctctcggtgtcctccccctcctcgtgggcgcctcccccggtgttttcgaggaacaacagcatcagcaatggcgccggggaggagatggtcggcctcggcgacgagctcatcagcccggccaacggcgggggcccgccatcgcccttcttcggcggcgacccgctcatggacgagctccagctgcaggaccagctcgcgttcctcaacgagggcggcgtccccgcggggcaccagatgcccatgttcgacggcggcgagtgccggagccccggcggaggcgacggcggccttttctcctacaacctagggtgggcgaacggtggccccggacaccgccggagcgcgtcggtcagcgagctctgcctcggcggcgccgacggcctcggctggaagccgtgcctctactacgcgcgcggctactgcaagaacggcagcgcttgccggttcgtccacggcggcctccccgacgacgccgccggcaagatggacccctccgccgtggagcagcagtgtcaggacttcctcatccgctccaagtcccagcgcctcgccgccgccgccttcccctactcgcccaccggctcactccccggctcgccatccgcagccaccaagtgtttgagcttgctcctccagcagcagcagcagcagaacgagagccagagggcggcggcagcggcggcgctgatgctaggcggcgacgaggcgcacaagttcatggggcggccgcggctggagcgcgccgacttcgcgagcatgatgaaccccggctcgcgccagatttacctcaccttcccggcggatagcaccttccgcgaggaggacgtctccaactacttcagcatctacggccccgtccacgacgttcgcatcccgtaccagcagaagcgcatgttcggcttcgtcaccttcgtctacccggagacggtgaagctgattctcgccaagggcaacccgcacttcatctgcgacgcccgcgtgctcgtcaagccatacaaggagaagggcaaggtccccgacaagtacaggaagcagcaccagccgggcgagagggtggacttctccagctgcactactccaactggactcgatgccagagaccccttcgacatgcaccagctcggtgcgagaatgctgcagcactccaacagcgcgaatgagatgctgctgaggaggaagctggaggagcagcagcaggccgccgagctgcagcaggcgatcgagctccacagccgccgcctcatggggctgcagctgctagacttcaagtcgcgcgccgccgcggcgccgacccccattggcaatcctttcagcgcttctcagaccgccgccaacgcgaccggcgagtcgcctcccgattccggggagctcggtaagggaagcggcttccttcttgctcacaagaaggcggtcaacggagccgataaggaggaatccaccggagagtcctccagccctaacacagacagtgaccaaagtgtggagcataatctgccggacagcccgtttgcgtcgccgaccaagtccgcgggatttgctcgcgatcctttcgctcccactgaggcggagatctccgccaccgcgtcgactggttgtagcgccacctatgttggcatcaacaatggcgccagcaatggcggcactaaccatctcctaccttctgccttggacatgccctcaccaaaaccttatttcttccccatgtccaggctggcctccgatcacggcgcgatcggaatgtaa</cdnaseq>|
| + | zinc finger family in maize: genome-wide identification, classification and |
| − | AA = <aaseq>MDAYEATKVVFSRIQALDPDHAAKIMGFLLIQDHGEKEMIRLAF GPEALLHTVMAKARKELGLLPASGPGTPTSVAAAAAAAHSPFMLSRQNSGRCGTAPSP LSVSSPSSWAPPPVFSRNNSISNGAGEEMVGLGDELISPANGGGPPSPFFGGDPLMDE LQLQDQLAFLNEGGVPAGHQMPMFDGGECRSPGGGDGGLFSYNLGWANGGPGHRRSAS VSELCLGGADGLGWKPCLYYARGYCKNGSACRFVHGGLPDDAAGKMDPSAVEQQCQDF LIRSKSQRLAAAAFPYSPTGSLPGSPSAATKCLSLLLQQQQQQNESQRAAAAAALMLG GDEAHKFMGRPRLERADFASMMNPGSRQIYLTFPADSTFREEDVSNYFSIYGPVHDVR IPYQQKRMFGFVTFVYPETVKLILAKGNPHFICDARVLVKPYKEKGKVPDKYRKQHQP GERVDFSSCTTPTGLDARDPFDMHQLGARMLQHSNSANEMLLRRKLEEQQQAAELQQA IELHSRRLMGLQLLDFKSRAAAAPTPIGNPFSASQTAANATGESPPDSGELGKGSGFL LAHKKAVNGADKEESTGESSSPNTDSDQSVEHNLPDSPFASPTKSAGFARDPFAPTEA EISATASTGCSATYVGINNGASNGGTNHLLPSALDMPSPKPYFFPMSRLASDHGAIGM </aaseq>|
| + | expression profiling under abscisic acid and drought treatments. PLoS One. |
| − | DNA = <dnaseqindica>3037..3070#2691..2921#2423..2537#2086..2325#1907..2000#1637..1823#1383..1559#332..1302#cgcactagtacgagtactacttctactacatagccatagcttagcttcttgttctagctcggctgcgagcgagctcttcttcctctgggggaaaatggagctcttcctctgctcttcactgcctcagtggcgccgctcccactgatctctctctcgtcttcttcttctttgagcttgctttgctgcacactctagtggtggtaatagaacacagctcagcagcagcagcggagcaagaagccaagaagccaagaagcaacgagtgttgtggtaaagaaagcggaggaggaggacgaagaagctcgattgcttgcttgctgtggagctcgccatggacgcctacgaggcgaccaaggtggtgttctcgcggatccaggcgctcgacccggaccacgcagccaagatcatgggcttcctcctcatccaggaccatggcgagaaggagatgatacgcctcgctttcggccccgaggcgctgctccacaccgtcatggccaaggccaggaaggagctcggcctcctcccggcgtccgggcccgggacgcccacctccgtggcggcggccgcggccgccgcccactcgcccttcatgctctcgcggcagaactccgggcgctgcggcaccgcgccctcgccgctctcggtgtcctccccctcctcgtgggcgcctcccccggtgttttcgaggaacaacagcatcagcaatggcgccggggaggagatggtcggcctcggcgacgagctcatcagcccggccaacggcgggggcccgccatcgcccttcttcggcggcgacccgctcatggacgagctccagctgcaggaccagctcgcgttcctcaacgagggcggcgtccccgcggggcaccagatgcccatgttcgacggcggcgagtgccggagccccggcggaggcgacggcggccttttctcctacaacctagggtgggcgaacggtggccccggacaccgccggagcgcgtcggtcagcgagctctgcctcggcggcgccgacggcctcggctggaagccgtgcctctactacgcgcgcggctactgcaagaacggcagcgcttgccggttcgtccacggcggcctccccgacgacgccgccggcaagatggacccctccgccgtggagcagcagtgtcaggacttcctcatccgctccaagtcccagcgcctcgccgccgccgccttcccctactcgcccaccggctcactccccggctcgccatccgcagccaccaagtgtttgagcttgctcctccagcagcagcagcagcagaacgagagccagaggtgccaactttttccacctccgagctcctcctggagtaccagtatccctttaacttagctccgattccgtcgatttgcagggcggcggcagcggcggcgctgatgctaggcggcgacgaggcgcacaagttcatggggcggccgcggctggagcgcgccgacttcgcgagcatgatgaaccccggctcgcgccagatttacctcaccttcccggcggatagcaccttccgcgaggaggacgtctccaactacttcaggtagtatactataatcccaccgcccaccgtcaccgccatgccatagctttaatctgatgatgccctctcaattgaagcatctacggccccgtccacgacgttcgcatcccgtaccagcagaagcgcatgttcggcttcgtcaccttcgtctacccggagacggtgaagctgattctcgccaagggcaacccgcacttcatctgcgacgcccgcgtgctcgtcaagccatacaaggagaagggcaaggtccccgacaagtacaggcaagccgagcttacttacagtccacattgcctctctaggttgatcccctataaccaatttgtaacttgctgttactttgcaggaagcagcaccagccgggcgagagggtggacttctccagctgcactactccaactggactcgatgccagagaccccttcgacatgcaccagctcggtgagcttttgcgatcatcttcttcatggtgattgggtgaatgattgttgctgaaatcgcatgagtctgtttgtaatggtgtcaggtgcgagaatgctgcagcactccaacagcgcgaatgagatgctgctgaggaggaagctggaggagcagcagcaggccgccgagctgcagcaggcgatcgagctccacagccgccgcctcatggggctgcagctgctagacttcaagtcgcgcgccgccgcggcgccgacccccattggcaatcctttcagcgcttctcagaccgccgccaacgcgaccggcgagtcgcctcccgattccggtaggacctggtgtatccgaccgaacgacgtttcacctgttgccgcgccagatgcagtgttgctaatgtttaccatggcggatttgcttgcttataggggagctcggtaagggaagcggcttccttcttgctcacaagaaggcggtcaacggagccgataaggaggaatccaccggagagtcctccagccctaacacagacagtgaccaaaggtggaattttgcgattaacatattgtctcatcgtcatcatttaatcatttgttattttcgccacacttagctttcgtccagcaatgcagacaagtaacatttcaccaaactgatcttttttcctctgcccattgtgcttgctctctttggcagtgtggagcataatctgccggacagcccgtttgcgtcgccgaccaagtccgcgggatttgctcgcgatcctttcgctcccactgaggcggagatctccgccaccgcgtcgactggttgtagcgccacctatgttggcatcaacaatggcgccagcaatggcggcactaaccatctcctaccttctgccttggacatgccctcaccaaaaccttatttcttccccatgtccaggtatgcatcataataatgtatggccccaagtgctattttagtattgcaaattagtacagtatgcatctgggcgccatgatttgctgagtgctatcattcattcatatgcatgcaggctggcctccgatcacggcgcgatcggaatgtaaagttgttctgaatggaagtgagtaatactactactgcctaatcctagtaagcacctcagtcctcttgcctttccacaaagtctatatcaagctctcaactccatgcttcctagtattgaatcatttgcttttcaccccccattggaatgatggtgccttactctcttttcctctgtccttgccatcacttgccccttgcaggaatactagcagcaaagaaaaagagaatagtggaatataggaaaagagtggagaagttgcagcatagtgttagtttcagtcacccccctttttttttactttccttttctttttcatttttcaagaagatagctttattaaaccataaagagaagaaagaggatgccctggcctccagaagagaagcagcagcagcagcatcaatcaagccaccaccaaccacaccaccaatgttttaaaatgcagtgccattcagataaaaatttagagcccctcctattactaccatatcatatcaccttagttaatcttagttactattaccacccaccgacccaccaccattgatgaattaccccccaaagctcttgataagctaccaccaaaatagccactagttttatagcattaggggtgatgtttagccacaagactagtactagtaccaaccacaagatacatgtaacactactactgcctgattgcagctgtgtgcaaggcagtgagtacagcagatatgtaatggacccaagaacaagtgacaggtttgagtgagagagagagagagagagaggaaggcttaattagctagtgtagtgtatgtaaaatcacaagaagatgaacaagtcagtcagtgtaggtgtgatgaaaggggaaggaccactcactgctgatgctgcaccattctgttgtgccaatgtggagatgtgtcagcgttggtgttcatggtccccctgatcagcaaatgcagtcccaatacaagaaaaaaaaaggaagtttctttttttctttt</dnaseqindica>|
| + | 2012;7(7):e40120. doi: 10.1371/journal.pone.0040120. PubMed PMID: 22792223; |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001067195.1 RefSeq:Os07g0682400]|
| + | PubMed Central PMCID: PMC3391233. |
| − | }}
| + | </ref> |
| − | [[Category:Genes]] | + | </references> |
| − | [[Category:Japonica mRNA]]
| + | ==Structured Information== |
| − | [[Category:Oryza Sativa Japonica Group]] | + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 7]] |
| − | [[Category:Japonica Genes]] | |
| − | [[Category:Japonica Chromosome 7]]
| |
| − | [[Category:Chromosome 7]]
| |
