Difference between revisions of "Os06g0102100"

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(Created page with "{{JaponicaGene| GeneName = Os06g0102100| Description = Cytochrome P450 family protein| Version = NM_001063068.1 GI:115465867 GeneID:4339836| Length = 2062 bp| Definition ...")
 
 
(10 intermediate revisions by 4 users not shown)
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{{JaponicaGene|
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The rice '''''Os06g0102100''''' was reported as '''''CYP93G2''''' in 2010 <ref name="ref1" /> by researchers from China.
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GeneName = Os06g0102100|
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Description = Cytochrome P450 family protein|
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==Annotated Information==
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Version = NM_001063068.1 GI:115465867 GeneID:4339836|
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[[File:99-Os06g0102100.png|right|thumb|327px|'''Figure 5.''' ''Analysis of the rice CYP93G2 T-DNA mutant<ref name="ref1" />.'']]
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Length = 2062 bp|
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===Gene Symbol===
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Definition = Oryza sativa Japonica Group Os06g0102100, complete gene.|
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*'''''Os06g0102100''''' '''''<=>''''' '''''OsF2H,F2H''''','''''CYP93G2'''''
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Source = Oryza sativa Japonica Group
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===Function===
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* Rice '''''CYP93G2''''' Is a Close Homolog of Sorghum CYP93G3
 +
* '''''CYP93G2''''' is related to the CYP93B subfamily, which consists of dicot flavone synthase II enzymes.
 +
* '''''CYP93G2''''' generates 2-hydroxy-flavanones, which are modified by O-glycosylation in transgenic Arabidopsis (Arabidopsis thaliana).
 +
* '''''CYP93G2''''' is the first enzyme that channels flavanones to C-glycosylflavone biosynthesis in rice.
 +
===Expression===
 +
* The mutant plants did not show observable differences from the wild-type plants with regard to growth, flowering time, or seed yield.
 +
Both tricin and isovitexin are frequently O-glycosylated (Cavaliere et al., 2005), and the aglycones can be released by acid treatment.
 +
* In the acid-hydrolyzed methanolic extracts of '''''CYP93G2''''' mutant leaves, the levels of tricin detected were comparable to those of wild-type samples (Fig. 5C). However, the accumulation of isovitexin was substantially reduced in the mutant plants, suggesting that '''''CYP93G2''''' is required for C-glycosylflavone production in rice. In nonhydrolyzed leaf extracts, a range of potential flavone metabolites were detected in the wild-type samples following HPLC separation, which was monitored at 350 nm (Fig. 5D).
 +
* On the other hand, the majority of these UV light-absorbing compounds eluted at 15 to 22 min were markedly reduced in absorbance in the mutant chromatogram.
 +
 
 +
You can also add sub-section(s) at will.
 +
 
 +
==Labs working on this gene==
 +
* School of Biological Sciences (Y.D., H.C., C.L.) and Department of Chemistry (I.K.C.), The University of Hong Kong, Hong Kong, China
 +
 
 +
==References==
 +
<references>
 +
* <ref name="ref1">
 +
Du Y, Chu H, Chu IK, Lo C. CYP93G2 is a flavanone 2-hydroxylase required for
 +
C-glycosylflavone biosynthesis in rice. Plant Physiol. 2010 Sep;154(1):324-33.
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doi: 10.1104/pp.110.161042. Epub 2010 Jul 20. PubMed PMID: 20647377; PubMed
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Central PMCID: PMC2938165.
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 +
</ref>
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</references>
 +
 
 +
==Structured Information==
  
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  ORGANISM  Oryza sativa Japonica Group
 
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            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
 
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            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
 
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            clade; Ehrhartoideae; Oryzeae; Oryza.
 
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|
 
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Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|
 
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AP = Chromosome 6:162259..164320|
 
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CDS = 162301..163218,163349..163987|
 
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GCID = <gbrowseImage1>
 
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name=NC_008399:162259..164320
 
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source=RiceChromosome06
 
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preset=GeneLocation
 
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</gbrowseImage1>|
 
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GSID = <gbrowseImage2>
 
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name=NC_008399:162259..164320
 
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source=RiceChromosome06
 
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preset=GeneLocation
 
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</gbrowseImage2>|
 
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CDNA = <cdnaseq>atggaggaaggcgtcgtcggtgggggcggcgctgccgttcttgttgccttgctcgtgaccgtggtgttggcggtgatgaggtcagctggaagcagaagcagcaagcgcggtcggctgcccccgagtcccatggcgctgcccatcatcggccacctccacctcatccggccgccaccccaccgcgccttcgaccgcatcctcgcccgccacgggcccctcgtctacctccgcctcgggccctccacgcactgcgtcgtgatcggctcggccgacgtggcgcgcgacttcctcaagttcgaggccagcatcccagagcggccgcccacggcggtgacgcgacagctggcgtacggcaaggccgggttcgcgttcgcgccctacggggcctactggcggttcgtgaagcggctgtgcatgtctgagctgctgggcccgcgcaccgtggagctgctccgccccgtccgtgccgcggagctggcggacgtgctgcgcgcggcgcagtcggcggcggagaggggcgagggcgtcgacatgagccacgagctggtccgcatggcgaacaacagcatcatgaggatggtggcgagcgctctgcctggcgagatggcggaggcggcgagggactgcgccaagcaggtggcggagctggtgggggcgttcaacgcggaggacttcgtggcggtgtgccggggctgggacctgcaggggatcgggcggaggaccaacgaggtgcacgccaggttcgacgcgctgctggagaccatcatcgaggccaaggaggaggcgcggaggcggagcctaaggctgggccggcgggagagtagcagcaaggacctgctggacatgctcatggacgcggcggaggacgacaccgcggaggtcaagctcaccagggacaacatcaaggccttcgtcctcgacatcttcaccgccgggtcggacacgacggccaccaccgtggagtggatgctggcggagctggttaaccacccggagtgcatggcgaagctgcggggcgagctggacgcggtggtgggcaggtcgcgtctggtgggagagcaggacgtggccaggctgccctacctgcaggcggtgctcaaggagacgttgcgcctccgcccccccgcggtgtttgcgcagcgcgtcactgtggagcccgtccaggtgcgcggctacaccatccccaccgacacccaggtcttcttcaacatcttctccattggccgcgacgccacctactgggaccaaccgctccacttccgccccgaccgcttccttcccgacggcgccggcgccaccgtcgaccccaagggccagcacccgcagctcatgcccttcgggagcggccgccgcgcctgccccggtatgggcctcgccatgcaggccgtcccggcgttcctggccgcgcttgtgcagtgctttgactgggcgccgccgccgtcgcagccgctgccgcttgacatggaggaggcggcggggctcgtgtccgcccgcaagcacccgctcctcctcctcccaacgccgcgcatccaaccgctcccttccttctactcctga</cdnaseq>|
 
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AA = <aaseq>MEEGVVGGGGAAVLVALLVTVVLAVMRSAGSRSSKRGRLPPSPM                    ALPIIGHLHLIRPPPHRAFDRILARHGPLVYLRLGPSTHCVVIGSADVARDFLKFEAS                    IPERPPTAVTRQLAYGKAGFAFAPYGAYWRFVKRLCMSELLGPRTVELLRPVRAAELA                    DVLRAAQSAAERGEGVDMSHELVRMANNSIMRMVASALPGEMAEAARDCAKQVAELVG                    AFNAEDFVAVCRGWDLQGIGRRTNEVHARFDALLETIIEAKEEARRRSLRLGRRESSS                    KDLLDMLMDAAEDDTAEVKLTRDNIKAFVLDIFTAGSDTTATTVEWMLAELVNHPECM                    AKLRGELDAVVGRSRLVGEQDVARLPYLQAVLKETLRLRPPAVFAQRVTVEPVQVRGY                    TIPTDTQVFFNIFSIGRDATYWDQPLHFRPDRFLPDGAGATVDPKGQHPQLMPFGSGR                    RACPGMGLAMQAVPAFLAALVQCFDWAPPPSQPLPLDMEEAAGLVSARKHPLLLLPTP                    RIQPLPSFYS</aaseq>|
 
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DNA = <dnaseqindica>43..960#1091..1729#accgaccgaaaaagcagaaacagcctgcctgaccccaaaaaaatggaggaaggcgtcgtcggtgggggcggcgctgccgttcttgttgccttgctcgtgaccgtggtgttggcggtgatgaggtcagctggaagcagaagcagcaagcgcggtcggctgcccccgagtcccatggcgctgcccatcatcggccacctccacctcatccggccgccaccccaccgcgccttcgaccgcatcctcgcccgccacgggcccctcgtctacctccgcctcgggccctccacgcactgcgtcgtgatcggctcggccgacgtggcgcgcgacttcctcaagttcgaggccagcatcccagagcggccgcccacggcggtgacgcgacagctggcgtacggcaaggccgggttcgcgttcgcgccctacggggcctactggcggttcgtgaagcggctgtgcatgtctgagctgctgggcccgcgcaccgtggagctgctccgccccgtccgtgccgcggagctggcggacgtgctgcgcgcggcgcagtcggcggcggagaggggcgagggcgtcgacatgagccacgagctggtccgcatggcgaacaacagcatcatgaggatggtggcgagcgctctgcctggcgagatggcggaggcggcgagggactgcgccaagcaggtggcggagctggtgggggcgttcaacgcggaggacttcgtggcggtgtgccggggctgggacctgcaggggatcgggcggaggaccaacgaggtgcacgccaggttcgacgcgctgctggagaccatcatcgaggccaaggaggaggcgcggaggcggagcctaaggctgggccggcgggagagtagcagcaaggacctgctggacatgctcatggacgcggcggaggacgacaccgcggaggtcaagctcaccagggacaacatcaaggccttcgtcctcgtcagtacactatatatcttcaaatactcctcctatatatatatatatatatatatatagtatatattcctccagctccagtgctccagtagaaaagaatgttaattatatatatatatatataatgcaggacatcttcaccgccgggtcggacacgacggccaccaccgtggagtggatgctggcggagctggttaaccacccggagtgcatggcgaagctgcggggcgagctggacgcggtggtgggcaggtcgcgtctggtgggagagcaggacgtggccaggctgccctacctgcaggcggtgctcaaggagacgttgcgcctccgcccccccgcggtgtttgcgcagcgcgtcactgtggagcccgtccaggtgcgcggctacaccatccccaccgacacccaggtcttcttcaacatcttctccattggccgcgacgccacctactgggaccaaccgctccacttccgccccgaccgcttccttcccgacggcgccggcgccaccgtcgaccccaagggccagcacccgcagctcatgcccttcgggagcggccgccgcgcctgccccggtatgggcctcgccatgcaggccgtcccggcgttcctggccgcgcttgtgcagtgctttgactgggcgccgccgccgtcgcagccgctgccgcttgacatggaggaggcggcggggctcgtgtccgcccgcaagcacccgctcctcctcctcccaacgccgcgcatccaaccgctcccttccttctactcctgagcatcctcgatcgtcgatacgtacacctgcgagcctgcgatcctgatccatccatttgtttttgttgacttgttactagcacctgctttgttttacgtacctcacatcaaataattcttattcaactcaaaattaagctacaagtaagctatctcattttgagtcaatgagtagaacaaaatatcatgggcaggggctcgaccttgtttggtcctactcatggccaccctgctcatatctacttggcttttagcaacccttatccttggagaagaaaattaaagagaggaggtgcaatgtaaaacaatttataaataaaactagaccaaagtg</dnaseqindica>|
 
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Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001063068.1 RefSeq:Os06g0102100]|
 
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}}
 
 
[[Category:Genes]]
 
[[Category:Genes]]
 
[[Category:Japonica mRNA]]
 
[[Category:Japonica mRNA]]

Latest revision as of 07:13, 17 October 2016

The rice Os06g0102100 was reported as CYP93G2 in 2010 [1] by researchers from China.

Annotated Information

Figure 5. Analysis of the rice CYP93G2 T-DNA mutant[1].

Gene Symbol

  • Os06g0102100 <=> OsF2H,F2H,CYP93G2

Function

  • Rice CYP93G2 Is a Close Homolog of Sorghum CYP93G3
  • CYP93G2 is related to the CYP93B subfamily, which consists of dicot flavone synthase II enzymes.
  • CYP93G2 generates 2-hydroxy-flavanones, which are modified by O-glycosylation in transgenic Arabidopsis (Arabidopsis thaliana).
  • CYP93G2 is the first enzyme that channels flavanones to C-glycosylflavone biosynthesis in rice.

Expression

  • The mutant plants did not show observable differences from the wild-type plants with regard to growth, flowering time, or seed yield.

Both tricin and isovitexin are frequently O-glycosylated (Cavaliere et al., 2005), and the aglycones can be released by acid treatment.

  • In the acid-hydrolyzed methanolic extracts of CYP93G2 mutant leaves, the levels of tricin detected were comparable to those of wild-type samples (Fig. 5C). However, the accumulation of isovitexin was substantially reduced in the mutant plants, suggesting that CYP93G2 is required for C-glycosylflavone production in rice. In nonhydrolyzed leaf extracts, a range of potential flavone metabolites were detected in the wild-type samples following HPLC separation, which was monitored at 350 nm (Fig. 5D).
  • On the other hand, the majority of these UV light-absorbing compounds eluted at 15 to 22 min were markedly reduced in absorbance in the mutant chromatogram.

You can also add sub-section(s) at will.

Labs working on this gene

  • School of Biological Sciences (Y.D., H.C., C.L.) and Department of Chemistry (I.K.C.), The University of Hong Kong, Hong Kong, China

References

  1. ↑ 1.0 1.1 Du Y, Chu H, Chu IK, Lo C. CYP93G2 is a flavanone 2-hydroxylase required for C-glycosylflavone biosynthesis in rice. Plant Physiol. 2010 Sep;154(1):324-33. doi: 10.1104/pp.110.161042. Epub 2010 Jul 20. PubMed PMID: 20647377; PubMed Central PMCID: PMC2938165.

Structured Information