Difference between revisions of "Os06g0136900"

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(Created page with "{{JaponicaGene| GeneName = Os06g0136900| Description = Protein of unknown function DUF296 domain containing protein| Version = NM_001063265.1 GI:115466261 GeneID:4340045| ...")
 
 
(4 intermediate revisions by 3 users not shown)
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{{JaponicaGene|
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The rice gene Os06g0136900 was reported as '''''dp1''''' in 2011<ref name="ref1" /> by researchers from China.
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GeneName = Os06g0136900|
 
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Description = Protein of unknown function DUF296 domain containing protein|
 
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Version = NM_001063265.1 GI:115466261 GeneID:4340045|
 
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Length = 1275 bp|
 
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Definition = Oryza sativa Japonica Group Os06g0136900, complete gene.|
 
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Source = Oryza sativa Japonica Group
 
  
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  ORGANISM  Oryza sativa Japonica Group
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==Annotated Information==
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            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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===Gene Symbol===
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            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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*'''''Os06g0136900 <=> DP1,OSDP1
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            clade; Ehrhartoideae; Oryzeae; Oryza.
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|
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===Function===
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Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|
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* '''''DP1''''' gene encodes a nuclear-localized AT-hook DNA binding protein, suggesting a grass-specific role of chromatin architecture modification in flower development.
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AP = Chromosome 6:1961307..1962581|
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* The researchers further found that '''''SDP1'''''/'''''REP1''''' is downstreamly regulated by '''''DP1'''''.
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CDS = 1961520..1962506|
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===Mutation===
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GCID = <gbrowseImage1>
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* The depressed palea1 (dp1) mutants show a primary defect in the main structure of palea, implying that palea is a fusion between the main structure and marginal tissues on both sides. The sterile lemma at the palea side is occasionally elongated in dp1 mutants. In addition, we found a floral organ number increase in dp1 mutants at low penetration.
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name=NC_008399:1961307..1962581
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[[File:Os06g0136900-1.png|center|thumb|400px|'''Fig. 1. Phenotype of dp1mutants.''' '' <ref name="ref1" />.'']]
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source=RiceChromosome06
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preset=GeneLocation
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===Expression ===
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</gbrowseImage1>|
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GSID = <gbrowseImage2>
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name=NC_008399:1961307..1962581
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===Evolution===
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source=RiceChromosome06
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preset=GeneLocation
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You can also add sub-section(s) at will.
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</gbrowseImage2>|
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==Labs working on this gene==
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CDNA = <cdnaseq>atggatccggtgacggcggcggcggcgcatgggggtgggcaccaccaccaccaccacttcggagcgccaccggtggcggcgttccaccaccacccgttccaccacggcggcggggcgcactacccggcggcgttccagcagtttcaggaggagcagcagcagcttgtggcggcggcggcggcggctggtgggatggcgaagcaggagctggtggatgagagcaacaacaccatcaacagcggcgggagcaacgggagcggcggggaggagcagaggcagcagtccggggaggagcagcaccagcaaggggcggcggcgccggtggtgatccggcgtcccaggggccgccccgccggctccaagaacaagcccaagcctccggtcatcatcacgcgcgacagcgccagcgcgctgcgggcgcacgtcctcgaggtcgcctccgggtgcgacctcgtcgacagcgtcgccacgttcgcgcgccgccgccaggtcggtgtctgcgtgctcagcgccaccggcgccgtcaccaacgtctccgtccggcagcccggcgcgggccccggcgccgtcgtcaacctcaccggccgcttcgacatcctctcgctgtccggctccttcctcccgccgccggcgcctccctccgccaccggcctcaccgtctacgtctccggcggccaggggcaggtcgtgggcggcacggtcgccggaccgctcatcgccgtcggccccgtcgtcatcatggccgcctcgttcgggaacgccgcctacgagcgcctcccgctcgaggacgacgagccgccgcagcacatggcgggcggcggccagtcctcgccgccgccgccgccgctgccattaccaccacaccagcagccgattcttcaagaccatctgccacacaacctgatgaacggaatccacctccccggcgacgccgcctacggctggaccagcggcggcggcggcggcggccgcgcggcgccgtactga</cdnaseq>|
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* State Key Laboratory of Plant Genomics and National Center for Plant Gene Research (Beijing), Institute of Genetics and Developmental Biology, Chinese Academy of Sciences,
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AA = <aaseq>MDPVTAAAAHGGGHHHHHHFGAPPVAAFHHHPFHHGGGAHYPAA                    FQQFQEEQQQLVAAAAAAGGMAKQELVDESNNTINSGGSNGSGGEEQRQQSGEEQHQQ                    GAAAPVVIRRPRGRPAGSKNKPKPPVIITRDSASALRAHVLEVASGCDLVDSVATFAR                    RRQVGVCVLSATGAVTNVSVRQPGAGPGAVVNLTGRFDILSLSGSFLPPPAPPSATGL                    TVYVSGGQGQVVGGTVAGPLIAVGPVVIMAASFGNAAYERLPLEDDEPPQHMAGGGQS                    SPPPPPLPLPPHQQPILQDHLPHNLMNGIHLPGDAAYGWTSGGGGGGRAAPY</aaseq>|
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Beijing 100101, China
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DNA = <dnaseqindica>76..1062#aaaccaaacccctcgcctccgctttgaccaccgccgcgccgcgccacgccgcgccaccgtgagagagggagacagatggatccggtgacggcggcggcggcgcatgggggtgggcaccaccaccaccaccacttcggagcgccaccggtggcggcgttccaccaccacccgttccaccacggcggcggggcgcactacccggcggcgttccagcagtttcaggaggagcagcagcagcttgtggcggcggcggcggcggctggtgggatggcgaagcaggagctggtggatgagagcaacaacaccatcaacagcggcgggagcaacgggagcggcggggaggagcagaggcagcagtccggggaggagcagcaccagcaaggggcggcggcgccggtggtgatccggcgtcccaggggccgccccgccggctccaagaacaagcccaagcctccggtcatcatcacgcgcgacagcgccagcgcgctgcgggcgcacgtcctcgaggtcgcctccgggtgcgacctcgtcgacagcgtcgccacgttcgcgcgccgccgccaggtcggtgtctgcgtgctcagcgccaccggcgccgtcaccaacgtctccgtccggcagcccggcgcgggccccggcgccgtcgtcaacctcaccggccgcttcgacatcctctcgctgtccggctccttcctcccgccgccggcgcctccctccgccaccggcctcaccgtctacgtctccggcggccaggggcaggtcgtgggcggcacggtcgccggaccgctcatcgccgtcggccccgtcgtcatcatggccgcctcgttcgggaacgccgcctacgagcgcctcccgctcgaggacgacgagccgccgcagcacatggcgggcggcggccagtcctcgccgccgccgccgccgctgccattaccaccacaccagcagccgattcttcaagaccatctgccacacaacctgatgaacggaatccacctccccggcgacgccgcctacggctggaccagcggcggcggcggcggcggccgcgcggcgccgtactgatcaacatcgatctcgccggagagaaaaaaaatggaggagaaggatcggagcgagccgtgcatggtgtaggatgaattaagctaagagttaatttcttcttccgcctttgctaatcatgatgctctcgtgttgtttaatctgtggcaatctgcttaattgcaagctcatcactgcaattaagcagcagctaaggatggttggatggttaaaact</dnaseqindica>|
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* Ministry of Education Key Laboratory of Agriculture Biodiversity for Plant Disease Management, Key Laboratory of Plant Pathology of Yunnan Province, Yunnan Agricultural University,
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Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001063265.1 RefSeq:Os06g0136900]|
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Kunming 650201, China
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}}
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* Key Laboratory of Genome Science and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100029, China
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[[Category:Genes]]
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* National Key Facility for Crop Gene Resources and Genetic Improvement, Institute of Crop Science, Chinese Academy of Agricultural Sciences, Beijing 100081, China
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[[Category:Japonica mRNA]]
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==References==
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[[Category:Oryza Sativa Japonica Group]]
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<references>
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[[Category:Japonica Genes]]
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* <ref name="ref1">
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[[Category:Japonica Chromosome 6]]
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Jin Y, Luo Q, Tong H, Wang A, Cheng Z, Tang J, Li D, Zhao X, Li X, Wan J, Jiao
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[[Category:Chromosome 6]]
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Y, Chu C, Zhu L. An AT-hook gene is required for palea formation and floral organ
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number control in rice. Dev Biol. 2011 Nov 15;359(2):277-88. doi:
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10.1016/j.ydbio.2011.08.023. PubMed PMID: 21924254.
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</ref>
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</references>
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==Structured Information==
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    [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 6]]

Latest revision as of 06:42, 10 December 2016

The rice gene Os06g0136900 was reported as dp1 in 2011[1] by researchers from China.

Annotated Information

Gene Symbol

  • Os06g0136900 <=> DP1,OSDP1

Function

  • DP1 gene encodes a nuclear-localized AT-hook DNA binding protein, suggesting a grass-specific role of chromatin architecture modification in flower development.
  • The researchers further found that SDP1/REP1 is downstreamly regulated by DP1.

Mutation

  • The depressed palea1 (dp1) mutants show a primary defect in the main structure of palea, implying that palea is a fusion between the main structure and marginal tissues on both sides. The sterile lemma at the palea side is occasionally elongated in dp1 mutants. In addition, we found a floral organ number increase in dp1 mutants at low penetration.
Fig. 1. Phenotype of dp1mutants. [1].

Expression

Evolution

You can also add sub-section(s) at will.

Labs working on this gene

  • State Key Laboratory of Plant Genomics and National Center for Plant Gene Research (Beijing), Institute of Genetics and Developmental Biology, Chinese Academy of Sciences,

Beijing 100101, China

  • Ministry of Education Key Laboratory of Agriculture Biodiversity for Plant Disease Management, Key Laboratory of Plant Pathology of Yunnan Province, Yunnan Agricultural University,

Kunming 650201, China

  • Key Laboratory of Genome Science and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100029, China
  • National Key Facility for Crop Gene Resources and Genetic Improvement, Institute of Crop Science, Chinese Academy of Agricultural Sciences, Beijing 100081, China

References

  1. ↑ 1.0 1.1 Jin Y, Luo Q, Tong H, Wang A, Cheng Z, Tang J, Li D, Zhao X, Li X, Wan J, Jiao Y, Chu C, Zhu L. An AT-hook gene is required for palea formation and floral organ number control in rice. Dev Biol. 2011 Nov 15;359(2):277-88. doi: 10.1016/j.ydbio.2011.08.023. PubMed PMID: 21924254.


Structured Information