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| − | {{JaponicaGene|
| + | The rice gene Os06g0228200 was reported as '''''Lsi6''''' in 2008<ref name="ref1" /> by researchers from Japan. |
| − | GeneName = Os06g0228200|
| |
| − | Description = Similar to NOD26-like membrane integral protein ZmNIP2-2|
| |
| − | Version = NM_001063742.1 GI:115467215 GeneID:4340558|
| |
| − | Length = 4599 bp|
| |
| − | Definition = Oryza sativa Japonica Group Os06g0228200, complete gene.|
| |
| − | Source = Oryza sativa Japonica Group
| |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| + | ==Annotated Information== |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | ===Gene Symbol=== |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| + | *'''''Os06g0228200 <=> Lsi6, OsNIP2;2, NIP2-2, OsLsi6 |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| + | |
| − | |
| + | ===Function=== |
| − | Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|
| + | * '''''Lsi6''''' encodes a transporter protein which is responsible for the transport of Si out of the xylem and subsequently affects the distribution of Si in the leaf. Lsi6 belongs to the nodulin-26 intrinsic protein III subgroup of aquaporins and is permeable to silicic acid. |
| − | AP = Chromosome 6:6647405..6652003|
| + | |
| − | CDS = 6647866..6648121,6648834..6648895,6649008..6649202,6651296..6651520,6651679..6651837<br>|
| + | ===Mutation=== |
| − | GCID = <gbrowseImage1>
| + | * Knockdown of '''''Lsi6''''' did not affect the uptake of Si by the roots but resulted in disordered deposition of silica in the shoots and increased excretion of Si in the guttation fluid. |
| − | name=NC_008399:6647405..6652003
| + | ===Expression === |
| − | source=RiceChromosome06
| + | * '''''Lsi6''''' is expressed in the leaf sheath and leaf blades as well as in the root tips. |
| − | preset=GeneLocation
| + | |
| − | </gbrowseImage1>|
| + | ===Sublocalization=== |
| − | GSID = <gbrowseImage2>
| + | * Cellular localization studies revealed that Lsi6 is found in the xylem parenchyma cells of the leaf sheath and leaf blades. Moreover, Lsi6 showed polar localization at the side facing toward the vessel. |
| − | name=NC_008399:6647405..6652003
| + | |
| − | source=RiceChromosome06
| + | ===Evolution=== |
| − | preset=GeneLocation
| + | |
| − | </gbrowseImage2>| | + | You can also add sub-section(s) at will. |
| − | CDNA = <cdnaseq>atggcatcgacgacagcgccgtcgaggaccaactctcgggtgaactactcgaacgagatccatgacctctccaccgtgcagagcgtctccgccgtccccagcgtctactaccccgagaaatccttcgccgacatcttccctcctaacctcctcaagaaggtgatatcggaggtggtggcgacgttcctgcttgtgttcgtgacgtgcggggcggcgtccatctacggcgaggacatgaagcgcatctcgcagctggggcagtcggtggtcggtggcctcatcgtcaccgtcatgatctacgccaccggccacatctccggcgcccacatgaacccggccgtcaccctctccttcgccttcttccggcatttcccctggattcaggtgccgttctactgggcggcgcagttcacgggggcgatgtgcgcggcgttcgtgctgcgggcggtgctgtacccgatcgaggtgttggggacgacgacgccgacggggccgcactggcacgccctcgtcatcgagatcgtcgtcaccttcaacatgatgttcgtcacctgcgccgttgccaccgactccagagcggtgggtgagttggcggggttagcagtcggttccgcggtttgcattacgtcgatcttcgcagggccggtgtcaggaggatcgatgaacccggcgaggacgctggcgccggcggtggccagcaacgtctacaccggcctctggatctacttcctcggccccgtcgtcggcaccctctccggcgcatgggtctacacctacatccgcttcgaggaggcccccgccgccgccggcggcgccgccccccagaagctctcctccttcaagctccgccgcttgcagagccagtccatggccgccgacgagttcgacaacgtctaa</cdnaseq>|
| + | ==Labs working on this gene== |
| − | AA = <aaseq>MASTTAPSRTNSRVNYSNEIHDLSTVQSVSAVPSVYYPEKSFAD IFPPNLLKKVISEVVATFLLVFVTCGAASIYGEDMKRISQLGQSVVGGLIVTVMIYAT GHISGAHMNPAVTLSFAFFRHFPWIQVPFYWAAQFTGAMCAAFVLRAVLYPIEVLGTT TPTGPHWHALVIEIVVTFNMMFVTCAVATDSRAVGELAGLAVGSAVCITSIFAGPVSG GSMNPARTLAPAVASNVYTGLWIYFLGPVVGTLSGAWVYTYIRFEEAPAAAGGAAPQK LSSFKLRRLQSQSMAADEFDNV</aaseq>|
| + | * Research Institute for Bioresources, Okayama University, Kurashiki 710-0046, Japan |
| − | DNA = <dnaseqindica>3883..4138#3109..3170#2802..2996#484..708#167..325#gagaccagggcaagcagcagtagcaaagcagaagcagaggcagaggcagcacagcttgatcgttcttccatcgatcgatcggcagctagcgctcacagtactctcgatcgctcgctcgcgctggtccgttgattcgttgtcctagatagatagctaaaggggggccatggcatcgacgacagcgccgtcgaggaccaactctcgggtgaactactcgaacgagatccatgacctctccaccgtgcagagcgtctccgccgtccccagcgtctactaccccgagaaatccttcgccgacatcttccctcctaacctcctcaagaaggtatatatatataatcaagcaataatcctagctagttagcaacgatcgatcgatgatcatcaatcaggatcgagctagctagctagcaaatcaagaacaacaacaagaagaaggagaagataaagtatatatatggtgtacgatgatgtgtgcggcaggtgatatcggaggtggtggcgacgttcctgcttgtgttcgtgacgtgcggggcggcgtccatctacggcgaggacatgaagcgcatctcgcagctggggcagtcggtggtcggtggcctcatcgtcaccgtcatgatctacgccaccggccacatctccggcgcccacatgaacccggccgtcaccctctccttcgccttcttccggcatttcccctggattcaggtaacttaattcatgcacatgcatgaacacatcgatcactcatgcctgctggctatctatctcctttactttatttccattttccatatctcctctccctttctttcttgctttctttcttcctttttcatgggttgtttcggatgaaaaagaaaactctatttcctcaaaaaaaaaaagaaaagaaaaaaggagtttccattaattggttgagttctactaactagtactgttagttagtactcagctccttaatttactccttgtgtttggacatcgatgcaacctcatatattaaccagctacttttcatctccaaatatatactagtaccaaaattctttttcaaaaatcactgtacaaaaatatattttccattatctttcgaaaaaaaaaacttcccgtgaataggagttgtcagcatgtactcctggacgtgcacaggaattagtcacggcttaattaagcaaaactttggagcctacctggcatctaccactccttgaaaaataaatcgcatccactgtacacatggacgatgcataaccttctgacaactgaacatattcgaagcagccagccaaatagttcatcctattcatcaagtagctaggacacacaagttgataaaagagtatataggactggctcataataatgccataaaatatactttccttttttttttgcgaactataaaatatgttttctgcctcagcatatttgtccttacctagtctggcatgaggccagtagcatgcatgaggaattagcaagctgacaaaaaataattggcattactggcaacatgctgggctaatcacaacatgtgaacaagcccatcattcatcagatcgaaccaaggctctaggtaattaaaaaaggacaaaattagaacaaaaaaaaaggagaataagacaatcagtagtagtagtactttttagatgagaaggataaggcaacttgatgcatgatcctctcccatgattaattagctcataattaattcggcttaccatgaaagcctcaatgagttgccactaaccccaaccaccaccacgtaccagcctaagctaaggagagggggtttgacattcgcatggttcccttgttaaccatgtgatttttgatcattgatatccttaatatatttatatgcatacatacggccttgctccctagcaaccatattcccaattattgcgaagccgttcttgcttgtaggtcacaaatacaacatctcacgtacgtacttgagctaaccaaaccatcggccgtgccaacaatggcattaaagtggaatagttctggaatcagccatgatgatagaacccaaatttcaaaaaaagtataacttccagcctctgcaaaaccacgaccatagataataatgcctatatatgcttagaaagttgccgggctttagctatgaaaggcacgtgtgcacgcttctgaatcacgtacgtgccctcaatctgccgtgaaaccacgccggccgccctttcggcgagaagaaattattcgatccgatgcgatgcgatagatgctgtgctcgctcttgcgtgccagtctctcgccacacgcgagcatggctagctaaggatctatagctaattaagctacttgcagcatgtcgatcaatctgacccaacttgcccatacagttagccagccagccatattgcatacttgcatgtctgaatcctgatcgatctgagtgatgcccagagatagatagatagatagatagatacgattattcattctctgcagcgatagatttagatcaagagggggagttcaagaagactccaaagattcgtacgctcttttaattttttttctcccttttcttcccatgtctcgatcggccgtataatcgatcggtcgcgaggagcggcgtgcattgcgttcgcggtcacatcacgatcgtggagctagcaatatatatagctttggttgtgtggcgttttcgatcggatcctctaagcaaagcataatattattgagcgtagtacactacggccgtcggccgtgtggcttatacgtattcgcggctgtgtgactgtggtgtggtggtgtgtggtttgcaggtgccgttctactgggcggcgcagttcacgggggcgatgtgcgcggcgttcgtgctgcgggcggtgctgtacccgatcgaggtgttggggacgacgacgccgacggggccgcactggcacgccctcgtcatcgagatcgtcgtcaccttcaacatgatgttcgtcacctgcgccgttgccaccgactccagagcggtaaatataataatacatttactcacaagattaattaattggcttcttaaatctgctgtaaataattaattacaaaaaaattaattgagatttggtttaattttggttgcaggtgggtgagttggcggggttagcagtcggttccgcggtttgcattacgtcgatcttcgcagggtaattaatgaatcgattactaatgaccacccctaaacttgggaagaattaactagcaccggattagttatttaattaaccgtaatcaaaatattttagtaaccactagtacgctgcatgtagtgggtaatagctaaccatcgtggcttttcaacaaacctctggaaaatctagcttagctgacgacattctttggtagaatcttcgttgttcagcccacataattatttttttttctacagagaatttaaagcgccatatttataacaaggtgtcacacacagactgacgtagagcagagccggactcagatgacttatattagtatacacagtacttagatagttaggttcaaggcacatgcaccaagctagctatgtctctcacatcgatcagccattaagctactgtttaattatgtacttcacaaaacgacgttgctaacatggactcctgattagcctgtacaaaccattctttggacctcctaacactcacacacattattcctgaccgtatcactacaaggacacaacttgcatgtactgactgaaactaaaaaaacttctaaaaaatatataaaataagaaaaggggtaattaaccatagtataaagtagagacgagtagtgaaaaagatcagtatgtgttgattaatggggatgtatagctgattaagacgcggcgaaatacgacgcgagtggaaattgcaggccggtgtcaggaggatcgatgaacccggcgaggacgctggcgccggcggtggccagcaacgtctacaccggcctctggatctacttcctcggccccgtcgtcggcaccctctccggcgcatgggtctacacctacatccgcttcgaggaggcccccgccgccgccggcggcgccgccccccagaagctctcctccttcaagctccgccgcttgcagagccagtccatggccgccgacgagttcgacaacgtctaatcgccctgacgccatggacccacaccgtactgctatactgtatacgtatatacatatgtatgtatgtactgcacgcgtacgtacgtacgcacgtgcacgagcgcgggaagccattgtttgtacgatcgacgactctaccaagtcgaaatgtaatgtgtacggtgtctgtgtacgtgtggtggtgctgtgtgtacgtgggcccgctctgcttgaagaagaagagagagcttgagctagctatacgtgtatacatgtaccgtgtactatacgtacgtgcgtatttgtcttttttttttcctctcttccctgcgcctacgtgcgtatgtacgtacgctttctctcgctggtataatcagctggcgatcgatagcggcaaaaatatgttatgtgttcgtgtcagtctctttggctttgtattaaaaatcaatctgagttaatgaaggagctgagctttgcttgtc</dnaseqindica>|
| + | |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001063742.1 RefSeq:Os06g0228200]|
| + | ==References== |
| − | }}
| + | <references> |
| − | [[Category:Genes]] | + | * <ref name="ref1"> |
| − | [[Category:Japonica mRNA]]
| + | Yamaji N, Mitatni N, Ma JF. A transporter regulating silicon distribution in |
| − | [[Category:Oryza Sativa Japonica Group]] | + | rice shoots. Plant Cell. 2008 May;20(5):1381-9. doi: 10.1105/tpc.108.059311. |
| − | [[Category:Japonica Genes]]
| + | PubMed PMID: 18515498; PubMed Central PMCID: PMC2438455. |
| − | [[Category:Japonica Chromosome 6]] | + | |
| − | [[Category:Chromosome 6]]
| + | </ref> |
| | + | </references> |
| | + | |
| | + | |
| | + | ==Structured Information== |
| | + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 6]] |
