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| − | {{JaponicaGene|
| + | The rice '''''Os09g0134500''''' was reported as '''''OsTrx1''''' in 2014 <ref name="ref1" /> by researchers from Korea and China. |
| − | GeneName = Os09g0134500|
| |
| − | Description = Similar to Trithorax-like protein 1|
| |
| − | Version = NM_001069170.1 GI:115478079 GeneID:4346464|
| |
| − | Length = 14253 bp|
| |
| − | Definition = Oryza sativa Japonica Group Os09g0134500, complete gene.|
| |
| − | Source = Oryza sativa Japonica Group
| |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| + | ==Annotated Information== |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | [[File:56-Os09g0134500.png|right|thumb|327px|'''Figure 1.''' ''Schematic diagram of OsTrx1 and flowering phenotype of T-DNA insertional ostrx1 mutant..<ref name="ref1" />.'']] |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| + | ===Gene Symbol=== |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| + | *'''''Os09g0134500''''' '''<=>''' '''''OsTrx1,SDG723,Trx1,Trithorax1,OsSET33''''' |
| − | |
| + | ===Function=== |
| − | Chromosome = [[:category:Japonica Chromosome 9|Chromosome 9]]|
| + | * Suppression of Oryza sativa Trithorax1 ('''''OsTrx1''''') delayed flowering time in rice (Oryza sativa). |
| − | AP = Chromosome 9:2548365..2562617|
| + | * The plant homeodomain motif of OsTrx1 binds to native histone H3 from the calf thymus and that '''''OsTrx1''''' binds to Ehd3 through the region between the plant homeodomain and SET domains. |
| − | CDS = 2549786..2549918,2549993..2550096,2550893..2550988,2552567..2552644,2553416..2553477<br>,2554267..2554530,2555057..2555246,2555432..2555500,2555613..2555669<br>,2555746..2555807,2555894..2555959,2556029..2556146,2556225..2556272<br>,2556362..2556487,2556960..2557118,2558119..2558216,2558324..2558416<br>,2559741..2559937,2560043..2560147,2560231..2560354,2561121..2561334<br>,2561620..2561693,2561778..2561830,2561955..2562433|
| + | * The SET domain at the C-terminal end of OsTrx1 has histone H3 methyltransferase activity when incubated with oligonucleosomes. |
| − | GCID = <gbrowseImage1>
| + | * '''''OsTrx1''''' plays an important role in regulating flowering time in rice by modulating chromatin structure. |
| − | name=NC_008402:2548365..2562617
| + | ===Phenotypic analysis=== |
| − | source=RiceChromosome09
| + | * In the PF condition, the ostrx1 mutants flowered at approximately 161 d after germination (DAG), 54 d later than the segregating wild-type plants (Fig. 1, C and D). |
| − | preset=GeneLocation
| + | * Flowering time of the heterozygous plants did not differ from the wild type, indicating that '''''ostrx1''''' is a recessive allele. |
| − | </gbrowseImage1>| | + | |
| − | GSID = <gbrowseImage2>
| + | You can also add sub-section(s) at will. |
| − | name=NC_008402:2548365..2562617 | + | |
| − | source=RiceChromosome09
| + | ==Labs working on this gene== |
| − | preset=GeneLocation
| + | * Crop Biotech Institute, Kyung Hee University, Yong in 446-701, Korea |
| − | </gbrowseImage2>|
| + | * Department of Life Sciences, Pohang University of Science and Technology, Pohang 790-784, Korea |
| − | CDNA = <cdnaseq>atggtgatcgcggtggaggggggcttcgtgcacgaggaggaggaggtggaccacccaattcgctacctcccacttggccgcgtctactcctcctctgctccgtgccctctccccaagaagccccgctccgccgaggacggcaagccccccgtgatcgtctactaccgccgccgccgtaagaagccgcgggtcgaggggccacctccctcgcctgccacagcaccaccgatgctgcacccccgggaggacgacgaggatgaggaggttacacggcggaagggttctctcaagtacgagctgctgagcctggggcaagccccgcccgcattaggcggggatggggaggagcccgcgcggcggcgctgcctgaggcgtagcggaggggctgagaggaggggttacttctctgaacccaagaggcggcagcggcagggcgtgcacaaggaagctgcctcctcggctgggaggagatggttggagttggaaattgaggctgcggatccactggcctttgtgggattaggatgcaaggttttctggcccctcgatgaggattggtacaagggttctatcacagggtacaatgaagcgactaagaaacattccgtaaagtatgatgatggcgaatcagaggaccttaacctagctgatgaaaggataaaattttctatttcatctgaagaaatgaagtgcaggaacttgaaatttggaatttccaatctgaacaagaggggctatgatgagttgcttgcccttgctgttagccttcatgattaccaaggtcttgatccaggtgatcttgtgtgggctaaacttacaggtcatgccatgtggccagctgttgtggtggatgaatcaaatgttcctgctaacagggctttgaagccaggccgactagatcagtcgatacttgttcaattctttggtactcatgattttgccaggattaagttgaagcaagcggtgccctttctgaatggccttctttcttctttgcatcttaaatgcaagcaagcacgcttctatcggagtttagaagaagccaaggagtttctctgcacacagcttctcccagaaaatatgttgcaactacagaaatccatggaaaagggcagttctgatgctaattccaataaagatgtacattcttgtgacaatttatctgaagataaaacagctgaaagcggaggggattatgatgagatgactccaatagaactaggaaatcttcgtgtgagcaaattaggtaggatagtaactgactcagactatttccataacaaaaagcatatatggcctgaagggtatactgctttcaggaagttcagatcagtgaaagatccacatgtagtaatactttacaaaatggaggtactgaggaattcagatataaaagctcggccattgtttagggtcacatcagaagatggaacacagattgatggctctaccccaaatacatgttggaaggagatatattgtagattaaaggaaaaacagcgcaatgtggcctctggattggacagagatgtttgtcagggatctggttcctatatgtttggcttttcaaatccacaaatacggcaacttattcaggagttacccaatgcaaggtcatgcttaaagtattttgaaaatgctggagacacctttcgtgggtatagagctgttcatgtaaattggaaagatctagactattgtagtgtttgtgatatggatgaggaatacgaagacaatttgttcttgcaatgtgataagtgccgtatgatggtacatgctagatgctatggtgaactcgaaccattgaatggagtcctttggctttgcaacctgtgtcgacctgaggcgcctcgtgtttctccacgatgctgtctttgtccagtaacagggggcgcaatgaaaccaacaacagatggtcgttgggctcatcttgcatgtgctatatggattcctgaaacttgcttaaaagatgtgaagagaatggaaccgattgatggattgagcagaatcaacaaggaccgctggaaacttctatgcagcatttgcggagttgcttatggagcttgcatacagtgttctcatcctacctgtcgtgttgcatatcaccctctttgtgcacgtgctgctgatctttgtgttgagcttgaagatgatgacaaaatccacctcatgttacttgatgaggatgaggacccatgtattcgtctactttcatactgcaagaagcacagacaaccatcgactgaacgtccatctcttgaaagtaaccttgctaagcctgctgtggtagttcagacagatgcagttccaccatccggttgtgcaaggactgaaccttataatatccatgggagaaggggccaaaagcaacctcaagttatggctaccgcttctgtaaaacgtttatatgtagagaatatgccttatattgttagtggtttctgccaaaatagagtaggccatgatgctatcagtgaaccaattcaatcagttggctttttggatgttgcacatcaagaagctgttggcaacgtgtcttctatgattgaaaagtataaaagcatgaaggctacattcaggaggagactagcttttggaaagtcaagaattcatggatttggtgtctttgcaaaggtttcgcacaaggcaggcgacatgatgattgagtacatcggagagctcgtcaggccaccaatatcagacattagagagcggcgcatatacaactctttagtgggtgctgggacgtacatgttcaggatagatgatgagcgtgttatagatgctacgcgggcaggaagcattgcccatttaattaatcattcttgtgagccgaattgttattcacgcgtcataagtgttctcggggatgagcatatcatcatttttgcaaagcgggatataaatccatgggaagagttgacttatgattataggtttgtttcgagtgatcagcgacttccttgttattgtggattcccaaaatgccgtggagttgttaacgatgttgaagcagaggggcaatcagccaaaataagggtcaatagaagtgaattatttcaacaatga</cdnaseq>|
| + | * Department of New Biology, Daegu Gyeongbuk Institute of Science and Technology, Daegu 711-873, Korea |
| − | AA = <aaseq>MVIAVEGGFVHEEEEVDHPIRYLPLGRVYSSSAPCPLPKKPRSA EDGKPPVIVYYRRRRKKPRVEGPPPSPATAPPMLHPREDDEDEEVTRRKGSLKYELLS LGQAPPALGGDGEEPARRRCLRRSGGAERRGYFSEPKRRQRQGVHKEAASSAGRRWLE LEIEAADPLAFVGLGCKVFWPLDEDWYKGSITGYNEATKKHSVKYDDGESEDLNLADE RIKFSISSEEMKCRNLKFGISNLNKRGYDELLALAVSLHDYQGLDPGDLVWAKLTGHA MWPAVVVDESNVPANRALKPGRLDQSILVQFFGTHDFARIKLKQAVPFLNGLLSSLHL KCKQARFYRSLEEAKEFLCTQLLPENMLQLQKSMEKGSSDANSNKDVHSCDNLSEDKT AESGGDYDEMTPIELGNLRVSKLGRIVTDSDYFHNKKHIWPEGYTAFRKFRSVKDPHV VILYKMEVLRNSDIKARPLFRVTSEDGTQIDGSTPNTCWKEIYCRLKEKQRNVASGLD RDVCQGSGSYMFGFSNPQIRQLIQELPNARSCLKYFENAGDTFRGYRAVHVNWKDLDY CSVCDMDEEYEDNLFLQCDKCRMMVHARCYGELEPLNGVLWLCNLCRPEAPRVSPRCC LCPVTGGAMKPTTDGRWAHLACAIWIPETCLKDVKRMEPIDGLSRINKDRWKLLCSIC GVAYGACIQCSHPTCRVAYHPLCARAADLCVELEDDDKIHLMLLDEDEDPCIRLLSYC KKHRQPSTERPSLESNLAKPAVVVQTDAVPPSGCARTEPYNIHGRRGQKQPQVMATAS VKRLYVENMPYIVSGFCQNRVGHDAISEPIQSVGFLDVAHQEAVGNVSSMIEKYKSMK ATFRRRLAFGKSRIHGFGVFAKVSHKAGDMMIEYIGELVRPPISDIRERRIYNSLVGA GTYMFRIDDERVIDATRAGSIAHLINHSCEPNCYSRVISVLGDEHIIIFAKRDINPWE ELTYDYRFVSSDQRLPCYCGFPKCRGVVNDVEAEGQSAKIRVNRSELFQQ</aaseq>|
| + | * Center for Systems Biology of Plant Senescence and Life History, Institute for Basic Science, Daegu 711-873, Korea |
| − | DNA = <dnaseqindica>12700..12832#12522..12625#11630..11725#9974..10051#9141..9202#8088..8351#7372..7561#7118..7186#6949..7005#6811..6872#6659..6724#6472..6589#6346..6393#6131..6256#5500..5658#4402..4499#4202..4294#2681..2877#2471..2575#2264..2387#1284..1497#925..998#788..840#185..663#gtcccccaagcctccgggggccgaccggagtgaggaggggggcgaggggcgtcctccggcgggaaacggcaaaaaattttcgcgagggcctcagggcccccaaaacttccctcccccggaaccccaaatccctaaacccctccagtggcgaagccctagagccgaaaccctagccagcccagccatggtgatcgcggtggaggggggcttcgtgcacgaggaggaggaggtggaccacccaattcgctacctcccacttggccgcgtctactcctcctctgctccgtgccctctccccaagaagccccgctccgccgaggacggcaagccccccgtgatcgtctactaccgccgccgccgtaagaagccgcgggtcgaggggccacctccctcgcctgccacagcaccaccgatgctgcacccccgggaggacgacgaggatgaggaggttacacggcggaagggttctctcaagtacgagctgctgagcctggggcaagccccgcccgcattaggcggggatggggaggagcccgcgcggcggcgctgcctgaggcgtagcggaggggctgagaggaggggttacttctctgaacccaagaggcggcagcggcagggcgtgcacaaggaagctgcctcctcggctgggaggagatggttggagtgagttggatctgtctacgcttgcctcggaataatatcttccctcatggccttcagtggaagtacttcatttaaaaggaactgtcaaaaatgtgatttgttcctgacgctggttctgtcgcaggttggaaattgaggctgcggatccactggcctttgtgggattaggatgcaaggcaaaagttcttgacaaagatttttattagcttctttttaggggaatgtaagaggctgggacctgaaccttgcagtgtatgtaggttttctggcccctcgatgaggattggtacaagggttctatcacagggtacaatgaagcgactaagaaacattccgtatgatctctgatccttcccagtgtgaagatgttttttccccttaaatcattgtttagttcagcaaattctccattgtttcttagttgattgataatgcttgcttttgctaatttcgtactggattttctcactatcaaaattcaatttttaatgccagatgctagatacattttacgtttgttgtttctttaatttaaattcaacccctctatgtctgaattatgaaagtacacgatttgaaagaaaattattaagaactcggtttaaacgtacttactgcaggtaaagtatgatgatggcgaatcagaggaccttaacctagctgatgaaaggataaaattttctatttcatctgaagaaatgaagtgcaggaacttgaaatttggaatttccaatctgaacaagaggggctatgatgagttgcttgcccttgctgttagccttcatgattaccaaggtcttgatccaggtgatcttgtgtgggctaaacttacaggtactcatcctattgtgttttgtacctctgacttctggtgttttcagctgaatattattaatttcatggttatattttttttgtagcatgtcactagaatttataatagcaatgtattcctatgacgcagattccaattatttttagctgtattaatttattgcattgttgacggaagtttgtgttaacccactaatgcactttgtatcgtgagctccattacaaatgccacatgatttcacttctgcagaattttgattttactcaatgagttgatgtttaggacattggcacgatctccaatatgcacattgggacattggcacggtctccacatttgaccattaccttttctaatcatatgctacatttattttacaaaaattattgcatcgaaagtagtttttgtgcatattagttcccagaggttttaaggtttcgttgtacagatagttataagctggtgtgacctttatggttttctatgatgttttcatgtttttctcttaaattgactgacattggtttgtaaccaatgtaagttagtctcttgtgctttatttgcctgtggagtgtttattctttgaatttgaagtttctttagttcatactttcctgtgtgataaattattaattacacgtactaaaagctaggggcatggagttttgttctttgtttaattcagtgagaagtgattgatgcacacccttgtgaggtgttcatcttttaggagacctgaaattaatttgtcatttgtttcaacaggtcatgccatgtggccagctgttgtggtggatgaatcaaatgttcctgctaacagggctttgaagccaggccgactagatcagtcgatacttgttcaattctttggtactcatgattttgccaggtttgattctgtaaaaggatatctaagataatcttcatttttcttagaaaggtaccctagaagttatgttttttttacctcaggattaagttgaagcaagcggtgccctttctgaatggccttctttcttctttgcatcttaaatgcaagcaagcacgcttctatcggagtttagaagaagccaaggagtatgtgtccaaagcctcttttttagaactaatccagcatatttttttaatcttatactgcgaggtgctcagtacagtattcagattccattttatactttataggtttctctgcacacagcttctcccagaaaatatgttgcaactacagaaatccatggaaaagggcagttctgatgctaattccaataaagatgtacattcttgtgacaatttatctgaagataaaacagctgaaagcggaggggattatgatgagatgactccaatagaactaggaaatcttcgtgtgagcaaattaggtatgttttaacaaataatatgaatagagaaaattttatttctttttctaagtataccaagaagcaaagtttcaggctttatagattgtcaataatatcaacagagaagtagagaaacataacaagagcgaagtcacatatttgcatattattacaaaaataagttagaaatatggcgcaagcatgaatatccttttcttttgtggaaatgacagccttcttgttcctaccaagttgaaggataccacacttttttttgtgaaatataattttgcactatctatgagctatggtgctgaagaatgctaaaggccaatttgttctgtcaggctagaccagcttaataagtgggtcccattttgttcttcttatggtatgcagacactcaagagcaattagggcattgttagtaataagacaccctggtacaaaagcactttgataatcaaacacatcattcagaaagattttaagtcggtttgctagtacctttgaagcaattttgtacagcacgttacacaaactgatgggcggaaattggttaggagatcaggctttgacacttttaggataaatacatttatattgtcacaaacccctcagggacctccgcaccatttagctgcgaaccacatcactaatctcatctccaataatctcccagtgtgtctgatagaacaatgctgggaatccatcagtacctgttccagcctttgtgggatccatctggaaaagagccctcctaatctcatcatttttgttctgggtacagattagaagtttagtttgtgcaggagtcctaaacttttagataatagatccttaaaaatatattttatttgcacgatttagtttattgacctaacccaaaacccctgaaagacataagtgattcctgttttagttttttcctgcagatttcttgtatgcttcttgtcactgaaatttgaactacgtttctcctgcactttttgaaaggctttgttactcgctacattcttaacatgattgtcgaatttctaattttatggttgcaaaagaatcatacctagttaccaacagcaaggcagtttgattacatttctgttgaaacaaattggtttcaacacacagccattgccctgacctttacatatagaaggcacttgattggataatatgtacagccattatttgtctgtgttgaacttatcaaaaatttatttgtagagcatttgatgagtgcttcttttggtgcagcctgaatttttcatgttgatacttttggtcctagtgtatctaagtttaacccttccattattgtactcctctctgagcttttcaggtaggatagtaactgactcagactatttccataacaaaaagcatatatggcctgaagggtatactgctttcaggaagttcagatcagtgaaaggtagttatctgtttgagaattttgttgtcaagcttatagcaaatgtaataaaccattgttaaattcacttcagtagtttcagaatcagtacattattattgttgcagatccacatgtagtaatactttacaaaatggaggtactgaggaattcagatataaaagctcggccattgtttagggtcacatcagaagatggaacacaggtaagcagtttaacaattttactgatttttttttaccattgaaaacatgtgttttagttgaattttaccttttcagaatatagtttatcatgagatattgtatcatcgatatgtttggaatgattatcgtaaactgaaaacacatactctattgacatttattatcaatctaattgtcttatcacagttgagattgctggttgtctcacactctcacttgct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| + | * State Key Laboratory of Plant Genomics and Center for Plant Gene Research, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001069170.1 RefSeq:Os09g0134500]|
| + | * Department of Plant Molecular Systems Biotechnology, Kyung Hee University, Yongin 446-701, Korea |
| − | }}
| + | ==References== |
| − | [[Category:Genes]] | + | <references> |
| − | [[Category:Japonica mRNA]]
| + | * <ref name="ref1"> |
| − | [[Category:Oryza Sativa Japonica Group]] | + | Choi SC, Lee S, Kim SR, Lee YS, Liu C, Cao X, An G. Trithorax group protein |
| − | [[Category:Japonica Genes]] | + | Oryza sativa Trithorax1 controls flowering time in rice via interaction with |
| − | [[Category:Japonica Chromosome 9]]
| + | early heading date3. Plant Physiol. 2014 Mar;164(3):1326-37. doi: |
| − | [[Category:Chromosome 9]]
| + | 10.1104/pp.113.228049. Epub 2014 Jan 13. PubMed PMID: 24420930 |
| | + | </ref> |
| | + | |
| | + | </references> |
| | + | |
| | + | ==Structured Information== |
| | + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 9]] |
