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| − | {{JaponicaGene|
| + | The rice '''''Os06g0614100''''' was reported as '''''OsbZIP49''''' in 2008 <ref name="ref1" /> by researchers from India. |
| − | GeneName = Os06g0614100|
| |
| − | Description = Eukaryotic transcription factor, DNA-binding domain containing protein|
| |
| − | Version = NM_001064611.1 GI:115468953 GeneID:4341530|
| |
| − | Length = 7310 bp|
| |
| − | Definition = Oryza sativa Japonica Group Os06g0614100, complete gene.|
| |
| − | Source = Oryza sativa Japonica Group
| |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| + | ==Annotated Information== |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | ===Gene Symbol=== |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| + | *'''''Os06g0614100''''' '''<=>''' '''''OsbZIP49,OsbZIP, bZIP49''''' |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| + | ===Function=== |
| − | |
| + | * The basic leucine (Leu) zipper (bZIP) proteins compose a family of transcriptional regulators present exclusively in eukaryotes. |
| − | Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|
| + | * The '''''OsbZIP''''' proteins characteristically harbor a bZIP domain composed of two structural features: a DNA-binding basic region and the Leu zipper dimerization region. |
| − | AP = Chromosome 6:25438308..25445617|
| + | * bZIP proteins have been shown to regulate diverse plant-specific phenomena, including seed maturation and germination, floral induction and development, and photomorphogenesis, and are also involved in stress and hormone signaling. |
| − | CDS = 25438518..25438676,25439080..25439385,25441859..25442130,25442318..25442351,25442592..25442669<br>,25443028..25443171,25443518..25443628,25443719..25443777,25444248..25444378<br>,25445230..25445291|
| + | |
| − | GCID = <gbrowseImage1>
| + | ===Expression=== |
| − | name=NC_008399:25438308..25445617
| + | * The researchers from India find specific or coexpression patterns of rice bZIP transcription factors starting from floral transition to various stages of panicle and seed development. |
| − | source=RiceChromosome06
| + | * bZIP transcription factor-encoding genes in rice also displayed differential expression patterns in rice seedlings in response to abiotic stress and light irradiation. |
| − | preset=GeneLocation
| + | |
| − | </gbrowseImage1>|
| + | ===Evolution=== |
| − | GSID = <gbrowseImage2>
| + | * The phylogenetic relationship among rice bZIP domains as well as with bZIP domains from other plant bZIP factors suggests that homologous bZIP domains exist in plants. |
| − | name=NC_008399:25438308..25445617
| + | * Similar intron/exon structural patterns were observed in the basic and hinge regions of their bZIP domains. |
| − | source=RiceChromosome06
| + | * Detailed sequence analysis has been done to identify additional conserved motifs outside the bZIP domain and to predict their DNA-binding site specificity as well as dimerization properties, which has helped classify them into different groups and subfamilies, respectively. |
| − | preset=GeneLocation
| + | <br> |
| − | </gbrowseImage2>| | + | '''''You can also add sub-section(s) at will.''''' |
| − | CDNA = <cdnaseq>atggcttatccttccacctctggcatgatccaagcttcttcctccctccatggcagcatcacaagaaggaaccctgaaggatatgacatgccatctgatttggatcaagctctcctcctctactttgatggccaggaacaagataagccatctactcaagaagaaccccacaaaccacttaattttgtaaaagagactctcaacatcttcccctcccagccaatggatggagagccaactccaacaccaaaggcttcgatgtcagcgccgcccatcgccggcttttccaggagatcgccggcgccagcggcggcagatggcaggccactcaccctaggcaagacctccaaggcagcattcaagaaagaaggtggcagtggcagcggcggcgccatggcagcgtcagcaagttcagagctcaaggggcccaagacgccggaccccaaaacgctgagaaggctggcgcagaatagagaggccgcaagaaagagcaggctaaggaagaaggcttacattcagcagctagagacaggcaggatcaggctggcgcatcttgaacaggagatacaattcacaagagctcagggtgcattctgcggtgctggaattctaagcccagacgctgcattgttcaacttggagtatgagcggtggcaggaggcacaccaccaagtgatcagccggctccgggccgctgtggaggagcaccgaccggatggcgagctgcagccccatgtcgatgaagccatgtcacactatggggtgctgatggctcacaaggctaggctggttggtgctgaccccctccacctcctctccggcctgtggaagggcgccgtagagcaatgcttcctctggataggcggcttccgcccctcggagcttatcaaggttgtggtccggcatgtggagcccctgacggagcagcagctcgccgccgtctacagcgcgcagcaggcggcgaggcaggaggaggacgcgctcgacggcggcctgcaggcgctgctccggtcgctctccgacgtcgtctcctcctcggacgcgccgtcgtcgtcgcagcagacgccgccggtgatgtaccacccctccgccgccgccgccatggctgcggcgagcttcatggggcagtacggcagctacagcaacctgcagctcgccatggacaagctcgccaacctcgccatcttcctacgacaggcggatgaggagaggatgcggacgctgcacgcgctgcggcggatgctgacggtgaggcaggcggcgcgctgcttcgtcgccgtcgacgactacttcggccgcctccgcgcgctcgccttgttctggaccaccacccggccgcacccggccgccggctag</cdnaseq>|
| + | |
| − | AA = <aaseq>MAYPSTSGMIQASSSLHGSITRRNPEGYDMPSDLDQALLLYFDG QEQDKPSTQEEPHKPLNFVKETLNIFPSQPMDGEPTPTPKASMSAPPIAGFSRRSPAP AAADGRPLTLGKTSKAAFKKEGGSGSGGAMAASASSELKGPKTPDPKTLRRLAQNREA ARKSRLRKKAYIQQLETGRIRLAHLEQEIQFTRAQGAFCGAGILSPDAALFNLEYERW QEAHHQVISRLRAAVEEHRPDGELQPHVDEAMSHYGVLMAHKARLVGADPLHLLSGLW KGAVEQCFLWIGGFRPSELIKVVVRHVEPLTEQQLAAVYSAQQAARQEEDALDGGLQA LLRSLSDVVSSSDAPSSSQQTPPVMYHPSAAAAMAAASFMGQYGSYSNLQLAMDKLAN LAIFLRQADEERMRTLHALRRMLTVRQAARCFVAVDDYFGRLRALALFWTTTRPHPAA G</aaseq>|
| + | ==Labs working on this gene== |
| − | DNA = <dnaseqindica>6942..7100#6233..6538#3488..3759#3267..3300#2949..3026#2447..2590#1990..2100#1841..1899#1240..1370#327..388#aaccactggttcccgttccatttcttgcacaactactcctctagccaaaagtcatcctttagcttctggtcagaagaacagccgcagggcctgcttggaaggggattaatttgagcaagtcagcaggcaagtttgggagaggaacaaaaagtttgcgggtatcgataaattcatcggttgatcatagaagatcagatgggaaagaagcaggagatggatttggattactaggctgtcagataccatttcaagatgggtgaatcatgtctgaagtgattcagaaggaaggttgaagcactgctgtttagtttaaggaagtatttttcatggcttatccttccacctctggcatgatccaagcttcttcctccctccatggcagcatcacgtaaaaccaacaatttcttccctcaacctttgtcttgattatctatttcatctagtcttgattctctatttcactaaaacaaaggacttgtgtatgtccatatttgtaaaatttaatctatttccctactgacaatactgcttttaatcatgattaccctgaaatggatctctatttcattaaaataatggactttgtgtacgttattgtttgaaaaattaatttatttcccttctgacaatcatgcttgtttcctcaaatggattaattgtgatcaatctacgccctttttcaccttagctacttggagtacttctgtttttgttttctcatgcatatgatgattttctcagactaaggtggcattttatataatgattgagattgcgaagatcgcttaagaagttttacccttcccccacatgtttaattcttctctgtttttagttgtttaggggggattaattgattgactaaaagtttttttcctgcagaaaagaacccatatttccccctcccttttttttttgtttttaagcaatgagtatgtttaacttttgcacccttttccaacatcaatttgttcatttctaattctatggaccacattcagataatcagcttaattgttcctttctaattccatccccccccctcttttttgtaaagcaatgagtatgtttaactttttgcacccttttccaacatcaatttgttcctttctaattccatggaccacattcggacaatataccattaagaaaaatcaagctctaaatcagtcgcagtagagctacgtactaaatgcaaaatagagactaatggtatattgtcataatgtgtaaatgcagaagaaggaaccctgaaggatatgacatgccatctgatttggatcaagctctcctcctctactttgatggccaggaacaagataagccatctactcaagaagaaccccacaaaccacttaattttgtaaaaggtcgatctactgttaagagtattttgtcatagtatattacaaacatggcttgaagaaaatcacaaagaatgtcatgcatacattgatttctgtgatttgacttgctttagcttatagctagatgtgtaagattaggaatggctaccaatcttctcattccctttcttttccttttggtcattatagtcatacatgattttattagctaattggagaagagtgacacgtaacaaacatagctgatatggtcgcaggatcttgctagaagattgcaaccaaaaagaacatattttttgccccacttttttgaagatcttggccacacgcatttgaaaaattagcacagatatatatctgggagacacatcagttgcatgtgtgcatgaaagcatgcaagcacctgcctacaaactatgtaaattactaagtcataatgcataattactgaacttgttcatgtgtgcatgcagagactctcaacatcttcccctcccagccaatggatggagagccaactccaacaccaaaggtatatatgttaatatgtgcacatatgtatctctagctagctatcacaatttaagcgtgttgttcacaaggtgccagttctcctcttaaggcttcgatgtcagcgccgcccatcgccggcttttccaggagatcgccggcgccagcggcggcagatggcaggccactcaccctaggcaagacctccaaggcagcattcaaggttttaacttttttacacacgtacgcctctgtagttgtccggaatttttctcggttagacagttgtatcatttttttaccccatcatatgggtggcgttctagtctttggatagatggcttttgatcaatcttgtgttcccttttagttgtgtatgttgggtgttttggctgtgtgcactttcgtggtacagaggctatgagtatactcagacttttgagttcaataaaccttccattatctaattaaaaaaggatagttgtatcacattggtataactgggtgagttaaataaagtttccattatcttagatgttactataattttgtatccatatggcaactagaaagaaggtggcagtggcagcggcggcgccatggcagcgtcagcaagttcagagctcaaggggcccaagacgccggaccccaaaacgctgagaaggctggcgcagaatagagaggccgcaagaaagagcaggctaaggaagaaggtgattacttactatagttactactattactatataccccattgattaaccagctcaatagcaagctaagctagttaattagtactagtactcttgtactaatatcagtcaacaaatgaacaagtagtcagccctcagaagcctaaataaacaaaaatctttggagctagcaagaaaagcaaagagatggtggaagtagctagtgaagttaacctaccacctaatgggagttgtgtgttagacacatgcatgggctttgcatttgttttttctttgcagaatctgataccttcgcttcatattatcatgtgtaattaatccttaatttgttctctttttatttttgtctgtgtgacaggcttacattcagcagctagagacaggcaggatcaggctggcgcatcttgaacaggagatacaattcacaagagctcaggtgaaaattaataagcagcaaagaactgaatcatctcacagaggacggatttggtttgggaaatattaattactactcgcaatttataaaccaccaatatttgtaggagaatcgaagtttctactactaggcaaataatcaatatctaaaattaagaacaaattatctcgaacgaacaatttgtgtttgtaaaaaaaacaatttataagttatatgatgtgtttctgtatctccctgcagggtgcattctgcggtgctggaattctaagcccaggttaacactttcgaactagcatttaatcataataaagagatttacactgctccatctcacgttaaacttaacacgcctagcaacaatagttatttgcatgtcttggtgcaaagaccataagtatttatatatgtcatatcatctaacaaaaatgcatttatatatacattatgtgagggcgtttcagacgctgcattgttcaacttggagtatgagcggtggcaggaggcacaccaccaagtgatcagccggctccgggccgctgtggaggagcaccgaccggatggcgagctgcagccccatgtcgatgaagccatgtcacactatggggtgctgatggctcacaaggctaggctggttggtgctgaccccctccacctcctctccggcctgtggaagggcgccgtagagcaatgcttcctctggataggcggcttccgcccctcggagcttatcaaggtaggctacttctcttctgtgaatgtttgaattttttatagttttatatcagattcatgctttctttttaaaatagtatgaaagttttgttggatcaatcagacggtccaaatcccttacaaagtaccgtacatgacatcttttacaatggtctatactgataacaccccaccaacaagtaacataccacctcacgtgctaccttgatccatctcaccaacatcgctcatgggccttcctctactgcaaccagttttctcctttgctgtttacgaaaattgatttttcataagtggtacagtactttaagagtatccctgtttttatagtcagctgccataaaactaccgtttccacaagcagtcacagagcaggatttttttaagtccacctgtaaaaataaataatatgtaatgcccgcgaaaatggtttttagtagtgagcttcctcccctctcctgttcatatatttttttaaaagagacattaatttgctaaattatattaggaggcaagcatctttttatgtacaagacgtggcacacccatagaggtgtgccttgaaaaatggaagaattttcttaagcagctgtcccgataaaataaaatgttagctggagatgaatctatacccacgtcttaatgtccaaattcattaaaattccacatacgcttttcaatctacctgtcatgttctagatgaaggtcaaaatttactcaatactttgcctccatatattttcctcgttacaaaagcctgattgaaacttgaaaggggcagcaaaagaatttgccgttaatttgaaatttcacaatttctttgttaattttgcaatttcggtccatacctgtattgtgaagcaaaatttaaaaccttgattctttaaagaagcaagagcaggctaagaaaggtataacgcataaatgagcttgaatactcttagaaaaataattacattcaagtaaatatatttatttgtgctagtttggatattgagagcagtgtactataaatcagtcagcaccttcttctatttttcttttttttttcccatgagttagacacattaggtacctaagttgacaactaatgcaaaaatagcagaaatacagtttaggtacccaaagtttctttttgctgggattacccaaagttttacgggatattataggaaagcacaaatttaagagcacgttatatttacgggattttacccaaaattgtacaaaatccatacgttccaaattaagctaggagccctatatatatgtcttggagcacggaaaactattgttctggaggaggatatatagatgctttgttcgactgattaaatgctacagatagcatatatacgaaatcacgaaataaaattgtgcactggagacatatatatgttccaatcatcaacccaaacaaaacatttttaagattatgtggcactcttgaaatcgacaaaataaaactcccaatggcaatggtaatggcccttgccacctgccgctcagctaccaaagtaattactagtagctactccctctgtcccataatataacaatctagtatcggatggaacatttcatagtacaactaatctagataggaaggtgtctagatttattatactatgaaatgtcacatccagtactaggacgaagagagtagttaggtaggtgatgggcagttaggctttggaattcttcatggattgagaagtagagatgcgtacatgcgcaagcgtcgatcaccagatggccggggttggtggagatcgatatatcgagcaggtagaggtagccgatcgatctagctacgtttgtgtcacattctcgatggagacatcgtctggaaccgttgatagagatgcattttagttaggacccctgaacatgcgtgttgtcgctcgttaatttctttcgtctaataatctaattttgttgttaaaataactgaattaaataacgatgttgcgagtattccatattttaccatgcgaaaagataaaattttcatttgattagatgaacgagaacagataagtagtacagctacatgattttgtttttctttctcttttttaagatataaattgaacttgaacttacacatatctatggaatgacatgtggtagaggaatctataaatattcaaaatatttcctgactttaattttgtcatgattaattagtttgaagatatattttacttttcttcttagcaatttcataaaagagcgtggtgcgcaacaaattaatataactcgataaaaagcccttaacattagtcctataatcaaattcaaaatggatcatacatagcatttggcgcaattcatatgttgaattacatagcatctcgcacaattcatatgttgaattaatttttaggtatagcttattagatacttcctccattttaaaataagcaaaccttgtaaatcttttctgaatcaattactgcatttatgcacaggttgtggtccggcatgtggagcccctgacggagcagcagctcgccgccgtctacagcgcgcagcaggcggcgaggcaggaggaggacgcgctcgacggcggcctgcaggcgctgctccggtcgctctccgacgtcgtctcctcctcggacgcgccgtcgtcgtcgcagcagacgccgccggtgatgtaccacccctccgccgccgccgccatggctgcggcgagcttcatggggcagtacggcagctacagcaacctgcagctcgccatggacaagctcgccaacctcgccatcttcctacgacaggtaaatcaacaatcctttcttctagactttttaagttaatttctctgagcactgaagctgatttgggttgggaaattattctaaaactctcgagggatgtcctctcgttttttttgcatggtctcacgtagttatgaaaaaaattaaaaagataatttgtttacaagaaaattaagaagataaattaatatgtgatatattactccacaaacatacaattttaagttgtatgttcgtagagtgatagcatactacatatcttcttaaaaaaaattaaaatcttttatagttatttaagtgacatgcaaacaataagataacatccattcgagagtttcaaatccaccctcgatttgggttgcaagttttcgcatcggtgacgacgttgtgcgtgtatgtgtaggcggatgaggagaggatgcggacgctgcacgcgctgcggcggatgctgacggtgaggcaggcggcgcgctgcttcgtcgccgtcgacgactacttcggccgcctccgcgcgctcgccttgttctggaccaccacccggccgcacccggccgccggctagaaatcaattgaatcggcttagcttaggttattagccacacacgcacacatgcaaagagtagctaaggctatatagcgacatgtaagagggagacgaggagtagatatatagctagagagagcatatgcaccatcttaacgatcaaaataaggttgtatgtgtattcgatcgggaaaatagttttaaaaatagactcgacgtgttgatctt</dnaseqindica>|
| + | * Interdisciplinary Centre for Plant Genomics and Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi 110021, India |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001064611.1 RefSeq:Os06g0614100]|
| + | |
| − | }}
| + | ==References== |
| − | [[Category:Genes]] | + | <references> |
| − | [[Category:Japonica mRNA]]
| + | * <ref name="ref1"> |
| − | [[Category:Oryza Sativa Japonica Group]] | + | Nijhawan A, Jain M, Tyagi AK, Khurana JP. Genomic survey and gene expression |
| − | [[Category:Japonica Genes]]
| + | analysis of the basic leucine zipper transcription factor family in rice. Plant |
| − | [[Category:Japonica Chromosome 6]] | + | Physiol. 2008 Feb;146(2):333-50. PubMed PMID: 18065552; PubMed Central PMCID: |
| − | [[Category:Chromosome 6]]
| + | PMC2245831. |
| | + | </ref> |
| | + | </references> |
| | + | |
| | + | ==Structured Information== |
| | + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 6]] |
