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| − | Please input one-sentence summary here.
| + | The rice '''''Os03g0239400''''' was reported as '''''OsbZIP26''''' in 2008 <ref name="ref1" /> by researchers from India. |
| | | | |
| | ==Annotated Information== | | ==Annotated Information== |
| | + | ===Gene Symbol=== |
| | + | *'''''Os03g0239400''''' '''<=>''' '''''OsbZIP26,OsbZIP, bZIP26''''' |
| | ===Function=== | | ===Function=== |
| − | Please input function information here.
| + | * The basic leucine (Leu) zipper (bZIP) proteins compose a family of transcriptional regulators present exclusively in eukaryotes. |
| | + | * The '''''OsbZIP''''' proteins characteristically harbor a bZIP domain composed of two structural features: a DNA-binding basic region and the Leu zipper dimerization region. |
| | + | * bZIP proteins have been shown to regulate diverse plant-specific phenomena, including seed maturation and germination, floral induction and development, and photomorphogenesis, and are also involved in stress and hormone signaling. |
| | | | |
| | ===Expression=== | | ===Expression=== |
| − | Please input expression information here.
| + | * The researchers from India find specific or coexpression patterns of rice bZIP transcription factors starting from floral transition to various stages of panicle and seed development. |
| | + | * bZIP transcription factor-encoding genes in rice also displayed differential expression patterns in rice seedlings in response to abiotic stress and light irradiation. |
| | | | |
| | ===Evolution=== | | ===Evolution=== |
| − | Please input evolution information here.
| + | * The phylogenetic relationship among rice bZIP domains as well as with bZIP domains from other plant bZIP factors suggests that homologous bZIP domains exist in plants. |
| − | | + | * Similar intron/exon structural patterns were observed in the basic and hinge regions of their bZIP domains. |
| − | You can also add sub-section(s) at will. | + | * Detailed sequence analysis has been done to identify additional conserved motifs outside the bZIP domain and to predict their DNA-binding site specificity as well as dimerization properties, which has helped classify them into different groups and subfamilies, respectively. |
| | + | <br> |
| | + | '''''You can also add sub-section(s) at will.''''' |
| | | | |
| | ==Labs working on this gene== | | ==Labs working on this gene== |
| − | Please input related labs here.
| + | * Interdisciplinary Centre for Plant Genomics and Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi 110021, India |
| | | | |
| | ==References== | | ==References== |
| − | Please input cited references here.
| + | <references> |
| | + | * <ref name="ref1"> |
| | + | Nijhawan A, Jain M, Tyagi AK, Khurana JP. Genomic survey and gene expression |
| | + | analysis of the basic leucine zipper transcription factor family in rice. Plant |
| | + | Physiol. 2008 Feb;146(2):333-50. PubMed PMID: 18065552; PubMed Central PMCID: |
| | + | PMC2245831. |
| | + | </ref> |
| | + | </references> |
| | + | |
| | | | |
| | ==Structured Information== | | ==Structured Information== |
| − | {{JaponicaGene|
| + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 3]] |
| − | GeneName = Os03g0239400|
| |
| − | Description = Similar to Transcription factor HBP-1a(C14)|
| |
| − | Version = NM_001056041.1 GI:115451810 GeneID:4332201|
| |
| − | Length = 11523 bp|
| |
| − | Definition = Oryza sativa Japonica Group Os03g0239400, complete gene.|
| |
| − | Source = Oryza sativa Japonica Group
| |
| − | | |
| − | ORGANISM Oryza sativa Japonica Group
| |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| |
| − | |
| |
| − | Chromosome = [[:category:Japonica Chromosome 3|Chromosome 3]]|
| |
| − | AP = Chromosome 3:7407417..7418939|
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| − | CDS = 7407925..7407981,7408248..7408373,7409577..7409654,7409749..7410011,7410532..7410574<br>,7411414..7411465,7411538..7411704,7411968..7412027,7412124..7412207<br>,7412487..7412591,7412673..7412732,7412809..7412865|
| |
| − | GCID = <gbrowseImage1>
| |
| − | name=NC_008396:7407417..7418939
| |
| − | source=RiceChromosome03
| |
| − | preset=GeneLocation
| |
| − | </gbrowseImage1>|
| |
| − | GSID = <gbrowseImage2>
| |
| − | name=NC_008396:7407417..7418939
| |
| − | source=RiceChromosome03
| |
| − | preset=GeneLocation
| |
| − | </gbrowseImage2>|
| |
| − | CDNA = <cdnaseq>atgggaaaaggagaggtagccactaggtccaaatctcaaaaatcatcggcgacacagaatgaacagagtacacccactaatcctcctactgcatatccggactggtctcaatttcaggcatactataatcctgctgggacagctccaatgaccccaccgggctttttccatccaaatgtggctccaagtcctcaggggcacccatatatgtggggtccacagatgatgcctccctatggaacaccgccgccatatgcggcgatgtatgcgcaagggacaccatatcagcaggcacctatgctaccgggttcacacccatacaatccttatcccgggcaatcaccaaatgggacagttcaaactcctacatctgctggcggaacagagacagataagtcaggcaaaagtaagcggaagactcccctgaagagatcgaaaggaagcttaggtaatcttgatgtagttgcaacaaaaaataaaaaggcgcccgcaaaaccttcagcatcctcatccaatgaaggttcttcacacagtgagagcggaagtggaagttcttctgaaggaagcagtacaaattcaaaaagtggttcaaggacaaaggatggttctgagcatggccagggtaatgatgctagcaacaaaggagctactgctcagagttctgcggttgagcccgtacaagcatctactgggccagttgtgcttaaccctatgatgccatactggcctgtccctcctcccatggctggcccagcaactggtgtaaacatgggaatggattactggggtactcctacttcagtacccatgcataataaagttattgcagcaccagcatcagctccttcatcaaactctcgtgatgttgttctcagtgatccagccatacaggatgagcgagaactgaagagacaaaagcggaagcaatcaaatagggaatcagctcgacgttcaagattacgcaagcaggctgaatgggaggaagtagccaatcgagctgatttgctaaagcaggaaaacagctcacttaaggaagaattgaaacaacttcaggagaagtgcaatagcttgacctcagaaaatacaactttacatgaaaagcttaaagagcttgaaggcgagaaatcaaatggaaactggtataaagagtga</cdnaseq>|
| |
| − | AA = <aaseq>MGKGEVATRSKSQKSSATQNEQSTPTNPPTAYPDWSQFQAYYNP AGTAPMTPPGFFHPNVAPSPQGHPYMWGPQMMPPYGTPPPYAAMYAQGTPYQQAPMLP GSHPYNPYPGQSPNGTVQTPTSAGGTETDKSGKSKRKTPLKRSKGSLGNLDVVATKNK KAPAKPSASSSNEGSSHSESGSGSSSEGSSTNSKSGSRTKDGSEHGQGNDASNKGATA QSSAVEPVQASTGPVVLNPMMPYWPVPPPMAGPATGVNMGMDYWGTPTSVPMHNKVIA APASAPSSNSRDVVLSDPAIQDERELKRQKRKQSNRESARRSRLRKQAEWEEVANRAD LLKQENSSLKEELKQLQEKCNSLTSENTTLHEKLKELEGEKSNGNWYKE</aaseq>|
| |
| − | DNA = <dnaseqindica>10959..11015#10567..10692#9286..9363#8929..9191#8366..8408#7475..7526#7236..7402#6913..6972#6733..6816#6349..6453#6208..6267#6075..6131#gtttttccccttcacaatcagagcgaaatcgagagagagggcggcggcggcgacttcgtgcgcaagagggaggcggcggcgacttcgtgcgcaagagggcgtgccacgggccagcgacgccagtgtcctcccttctccatcctccttcctctcatccctcctcccgccgatccctttcccttctccatcctccttcctctcatccgccgccgcgccggctcgtggctgagctgctcctgcacctcctcctcccagtcccgcgcccgcagctcccgcctctccccccgcttcttccgcctctcccgccctgtcagctccccctcacctccatagccaaggtaaggaaaccctagcagtgtgtaccatctctgatattttgtttataatgctagatctgcgcgattccgtttgcatgatatgaatgtccttgctgtcaacatctgttcaagcacactgcaatattttcgtttatcaattattacacagtagttattttcctgacgtgaacaagtattactatgtgatttgggcaagtattttttgatgagatgatttatgcttgagcatgacatggcaacgtgtttatttttctttgattgttgtattgtagatggataagaggaccaaggttttaatttttgctgcttctgccaatctattgttgtcaatgatggccatgattattcattctaggaaaagaaagatagtttctaggagggaaggtgttaaatatgacccaatggttgaaagggataggatgagaattgagtatctaaacacaaaaatttggaggaacgataacatgcttagacttagaaaagattctttctttcggttttgtaagctctttagaaatcgtggtttgcttgaagataccatccacatgtctattgaggaacaagtaactatgtttctaaatacagcagggcacaatcttagaaatagataagttggcactaattttgataggtccggagaaacagttagttgttatttcaacaagtgcttcatactgttggtgagctgcgagatgaactaatcaggcctccctcattggacaccccaagtaaaattgccgggaaccctaggtgggatccttactttaaggtgtgagattcatctgtgtctcattttcaattttatattttaacaaacctcaatgtcccctgatcttttatggtgttgaatataaaataggattgtatggagctattgatggcacacatattagagcctctgttcagaagaatatcgagccctcttttcgtggtaggaagtctcatgccacgcaaaatgtaatggcaactatagattttgatcttcggttcacttatgtcttggttggttgggagggtatagcacatgatgctgtagttttaagagatgcattggaacgtgaaaatggccttataccccaaggtaatagattaatttagttcatcaatttctccatctcaatagaaatgtgaccaacttgtccatcatatgataggaaaattctacctagttgatgctggatatggagccaaaccaggattcctccctccatttgtccggtaccacttgaatgagtgggggaataatccggtgcaaaatgaggagttgttcaactttaggcactcgtcccttcgtgtcacagttgaacgtgcatttggggcactaaagaggaggttcaaaattctagatgatgccaccccattctttccttgtccaactcaagtagatattgttgtagcttgttgcattattcataattgggtcatgaatgatggaattgatcagtatattacagatccattagatttgataagtgaacccacaaaagagtcatttgggtaggcaacagagccatctacgtttaaaaagtttggctagttgcattcttcgatggtgtctgtcccataaaggatgggtgctaagtttataaattttcttaggcataattaaattcccacaaattggataaattgaagtcatatgtccactgtcacccagacgattaaaccactcaagcattcatacaagtaaaaacaaatattaagtattgtaatgacgacgttttctgaagtgatagtagcatcaaacggatatgcatcaaaagaaaaccaacataagaaagataggaggcacataaaaaatgccaaacccacggatcctccacagcaattccatattctaaatcctcaaatcgcgccacggggacatcgagcagatctacccagaaccctcgccggcttagaattcacgaccggattcggattccaccgcccgcacgagcgaaaaaaaagaccagaaacaaatcgagagcttaagtcacacggtttactgggagggagggaggtcgaggcgctcgcgacggatctccactccacgccaatccagcagaggctgggcggcggcgagaggggaagcgcctcgaggtggcgccgcttgctccagcgggaggctgcccccgggttggggagcacttggatttgcgaaatttgggggaggtgtggcgagggagggagggaggtagaggcgctcgcgatggatcttcactctgcgccaatccaacagaggcggggcgacgacgagaggggaagcgccccgaggcggcgccgcttgctccagcgggaggctgcccccaggttggggagcacttggatttgcgaaatttgggggaggcatggcgcatgagaaagagagaggagaggaaaaaagttggtctaaaggcgtactccaatcacgagttcacgtagtccggaaggtgacctcctgagagagagggcgaataaaaaaacaagaagaagagcagctaagacaagtgtgtggtttgttggttgtgtgtgggcctggagaaaaagaatgcctggcccattacagaccgattccgcttccggctacagtaccatactaccatgtgctccaattggcacaatactaagctttttctttgcaattaaaaaaggacaactttttaaatccaaaattttcacatttaaaaattttggatttacgaatagatctaagtatatattttttagtttactttatcaaacaacgaaagtgatgaacccctacatacccctacaaataattaatttttaaaaaggcatgtttagtttcaagtcacctgaaaatacataaatctcggtcttttttagaccgtcaagatttcatccaaattcatgtggactttttctctcccccttatatcttctcttctatcgaaaggatggatgcacacaagcacggaacttatgtttggtttggggacctggtgggatgggttaggtccattaagggggagagaaaaagtccacatgaatttggatgaaatcttgacggtataaaaaagactgagatttgtgtattttcaagtgacttgaaactaaacatgcctttttaaaaattaataatttgtaggggtatgtaggggttcttcatcactttcgctgttcgcttaagtaaactaataaaaatatacagagctattcgtaaatccaaaatttttaaatgtgaaaattttggttttaaaaagttgtcatttttaattgcaaagagaaagcttctatactgtgccaatcggagcacatggtagtatggtactgtaaccagaagcgggctcgggctttaatgggttgggcatttttttctccaggcccacacaaccaacaaaccacacacttgtcttagccgctcttcttctttttttttattcaccctctctcaggaggtcaccttcccgacgacgtgaactcgtgatttgagtgtgccttcagaccaatttttttcctctctctctttctcatgcgccacgcctcccccgaatttcccaaatccaagcgctccccaacctgggggcagcctcccgctggagcaagcggccgcctcagggcacttcccctctcaccgccgccccgctctgctggattggcgcggagcagagatccatcgtgagcgcctctacctccctccctcccagtaagccgtgtgacttaagcttctagtcttcttttcgcccgcgcgggcggtggaatccgaatccagtcgcgagttctgagccggcgagggtgctgggtagatctactcagtgtccccgtgacgcgatttgaggatttagaatgtggaattgccgtggaggatccgtgggtttggcgcttttttttttgcctcctgtctttcttatgttgtttttttttctgatgcatatctgtttgatgctacatcacttcagaaaacgtcgtcattacaatacttaatatttgtttttccttgtacgaatgcctcagtggtgtaatcacgtgggcgacggtggaaatcaatttatccagtttgtgggaatttaattatgcctgagaaaatttataaactaagcacccatcctttatgggacagacaccatcgaagaatgtaactagccaaactttttaaacgtagatcaccaatacggacacaagtattttgattaccacttaagtttactacggagtaccatgttactggaaaactactgttagagaagtgtgtcggaaaccgtgtcaaaatctgagataccattattcatgcatatggaaaataattatggagtggccaaacccctaatgctggggttcagtcccgtgtcatggctagttggctacacggtcctgtgctcccaccactaaaaactaagcccagttctgctggcatacagatagactcatcctataaactcttaatcaactgaaatatttctacacctggctgcctgaaggttttagtggattgtcgtcaagcatgaaatatctatttcttgataatttgtgtggtgcattaaagcagcacgcattccttacctaaatgcctttttgttgacacaaaagcat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caacccaattgttgttgaaccagtaccttattagtcgagtgagtataatttaccgcacttcaatgacaatccagtgagtcgcaaaattggcaactacatttttgactggtgtagagagatgttttctaacttcttgagatacatctttaaaatacacactatatttgttttaaaagtcatggatatataagcaagcatgggaaacaacctcccaatacaatattaggttgactgcagatattcttgatcaattctcttttggtgatataagggtggattggttctttttcttcttttttttttttggttctcggcttctcgcatacatatcattgtccatttgttaacttaagaatgtatggttcgtcttagggttctcagcttgttgtatcactagtatactccctccgttttcctatatgatgttgtttcgttcatttttgaactaaccaacagcatataaaaaaaaatggggggagtattttttttgaggagtccattactagtgtactattttatcaaccgtatctccttttactgctatgggtagtcaaactgttgcaggtgctggttacacctagttattccaatgctggatgtatatgaccagggttaaataagcaatgcaatgttatttttgcggtatttttttttataaatttactattaaccttccttttgatgatatatatgttgtaacaaatgaaatactacaggctgaatgggaggaagtagccaatcgagctgatttgctaaagcaggaaaacagctcacttaaggaagaattgaaacaacttcaggagaagtgcaatagcttgacctcagaaaatacaactttacatgtaagatttgtgttcttctgttgtcctacacttcccataatgtgcagtagacaatagttactatttttagtttgctgcaaataagaaagtggatcaagggcaaaacatactaggggattacccaatcctcacaggctgttacttccaacgcattggttcactgataactacccctgaagtcctgaacccatcttcttttagacgtttggagttaacatttcattctttactttgaaatttatttgaggcatttttaatgattgtaggaaaagcttaaagagcttgaaggcgagaaatcaaatggaaactggtataaagagtgaaaagctgtaacttatcactttctgacttctgatgtaaggaataattacttggagctaccattgctattacagagtacatattcttaaaattttgttgtaactttcttgaattttcagataaattggaggcgacatggtaggtccgataattaggaggtattcatgtatgctattagatttttggccgagaggtagaattgtatcataggatttgacatgatggctacagattcttcttccagttgccgcggctgctgtactctatgcttttttttttctgcacttgtgtaagattctacgaagtaccatgtaaaagtccccaagtgatgtttgaaactctgggggttagcttctgagatagttgatgtagagctgctcattgagcgtctttacctgaattgatgtgtgtcacagttatagtttgtgacttatcattcagataattagaggcacaaatttgtataatgtactaacgggtcgtgataaggaaattttgttgcattttgct</dnaseqindica>|
| |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001056041.1 RefSeq:Os03g0239400]|
| |
| − | }}
| |
| − | [[Category:Genes]] | |
| − | [[Category:Japonica mRNA]]
| |
| − | [[Category:Oryza Sativa Japonica Group]] | |
| − | [[Category:Japonica Genes]] | |
| − | [[Category:Japonica Chromosome 3]]
| |
| − | [[Category:Chromosome 3]]
| |
