Difference between revisions of "Os05g0140100"

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(Created page with "{{JaponicaGene| GeneName = Os05g0140100| Description = Myb, DNA-binding domain containing protein| Version = NM_001061132.1 GI:115461994 GeneID:4337756| Length = 4034 bp| ...")
 
 
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{{JaponicaGene|
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The rice '''''Os05g0140100''''' was reported as '''''OsMYB2P-1''''' in 2012 <ref name="ref1" /> by researchers from China.  
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GeneName = Os05g0140100|
 
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Description = Myb, DNA-binding domain containing protein|
 
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Version = NM_001061132.1 GI:115461994 GeneID:4337756|
 
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Length = 4034 bp|
 
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Definition = Oryza sativa Japonica Group Os05g0140100, complete gene.|
 
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Source = Oryza sativa Japonica Group
 
  
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  ORGANISM  Oryza sativa Japonica Group
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==Annotated Information==
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            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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===Function===
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            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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* The rice '''''OsMYB2P-1''''' encodes R2R3 MYB Transcription Factor.
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            clade; Ehrhartoideae; Oryzeae; Oryza.
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* '''''OsMYB2P-1''''' is Involved in the Regulation of Phosphate-Starvation Responses and Root Architecture in Rice.
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|
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Chromosome = [[:category:Japonica Chromosome 5|Chromosome 5]]|
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===Phenotypic analysis===
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AP = Chromosome 5:2289441..2293474|
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* Overexpression of OsMYB2P-1 in Arabidopsis (Arabidopsis thaliana) and rice enhanced tolerance to Pi starvation, while suppression of OsMYB2P-1 by RNA interference in rice rendered the transgenic rice more sensitive to Pi deficiency.
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CDS = 2291448..2291580,2291712..2291841,2291947..2292967|
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* Furthermore, primary roots of OsMYB2P-1-overexpressing plants were shorter than those in wild-type plants under Pi-sufficient conditions, while primary roots and adventitious roots of OsMYB2P-1- overexpressing plants were longer than those of wild-type plants under Pi-deficient conditions.
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GCID = <gbrowseImage1>
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* These results suggest that OsMYB2P-1 may also be associated with the regulation of root system architecture.
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name=NC_008398:2289441..2293474
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source=RiceChromosome05
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===Expression===
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preset=GeneLocation
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* Expression of '''''OsMYB2P-1''''' was induced by Pi starvation.
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</gbrowseImage1>|
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* Overexpression of '''''OsMYB2P-1''''' led to greater expression of Pi-responsive genes such as Oryza sativa UDP-sulfoquinovose synthase, '''''OsIPS1''''', '''''OsPAP10''''', '''''OsmiR399a''''', and '''''OsmiR399j'''''.  
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GSID = <gbrowseImage2>
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* In contrast, overexpression of '''''OsMYB2P-1''''' suppressed the expression of OsPHO2 under both Pi-sufficient and Pi-deficient conditions.
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name=NC_008398:2289441..2293474
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source=RiceChromosome05
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===Subcellular localization===
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preset=GeneLocation
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* '''''OsMYB2P-1''''' was localized in the nuclei and exhibited transcriptional activation activity.
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</gbrowseImage2>|
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CDNA = <cdnaseq>atggggaggcattcttgctgctacaagcagaaattgaggaaggggctctggtcccctgaggaggatgagaagctcatgaatcacataaccaagcatggccatggctgctggagttctgttcctaaacttgcagggctccaaagatgcggcaagagctgcaggctgaggtggataaactatctgaggcctgacctcaagagaggtgcattctctcaggaggaagaagacctcatcattgagctccatgctgtccttgggaacaggtggtctcagattgcagctcagctgcctgggaggactgacaacgagatcaagaatctctggaattcttgcatcaagaagaagctccggcagaaaggcattgatcccaacacccacaagcccctcaccgaggctgatcgcaggggagcagcacccacagtcagcaccgagaggacctcagggtccagcgacgtcaacccgtcaagtgctggtgctctagggaacttgagccacctcctcagcgagacagcacaatcatcaatgctgctgccggtgtatgataagaatcaccctgaaactgcaagcttgccacgccctaaggtgccaccaaaggagttgtttcttgaccagcttactgccggtcacgagagcccatcaagttgccgctcatcaggtccaaccctgtattttcctttccagcaaccattaggctacagtaatgaatgtggcactggggatggtgcgagtatgaattcactctggttcaaccagaatgatttcaactgcagcacaatctccaccgtgatgccaccagtttcaccatcagccctctcaacatcaatggggctgaatcttcccccagaaaatcctcgtcacggaggcactggcattggcaacaccccgttctactgggatggttccaatcctagcagcagcggcagtactgggagcagcggaagcaacagtatgggattcgagccacagagcacaacctcaattttggagaacagtgtattcccatggacagatatcggacaagagaaagataccagagttcacttagtggaggaactcaagtggcctgatttgctccatggaacctttgctgaggcgacgacagccatgcagaaccagagccaatcattatacgatgatgtgatcaaggcagagagccaattcaacatggaagggatatgtgcctcttggttccagaatcagcaaccacaacaacagctgcaagcagcatcagacatgtatgataaagacttgcaaagattgcccttgtcttttgaacatatctag</cdnaseq>|
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You can also add sub-section(s) at will.
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AA = <aaseq>MGRHSCCYKQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLA                    GLQRCGKSCRLRWINYLRPDLKRGAFSQEEEDLIIELHAVLGNRWSQIAAQLPGRTDN                    EIKNLWNSCIKKKLRQKGIDPNTHKPLTEADRRGAAPTVSTERTSGSSDVNPSSAGAL                    GNLSHLLSETAQSSMLLPVYDKNHPETASLPRPKVPPKELFLDQLTAGHESPSSCRSS                    GPTLYFPFQQPLGYSNECGTGDGASMNSLWFNQNDFNCSTISTVMPPVSPSALSTSMG                    LNLPPENPRHGGTGIGNTPFYWDGSNPSSSGSTGSSGSNSMGFEPQSTTSILENSVFP                    WTDIGQEKDTRVHLVEELKWPDLLHGTFAEATTAMQNQSQSLYDDVIKAESQFNMEGI                    CASWFQNQQPQQQLQAASDMYDKDLQRLPLSFEHI</aaseq>|
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DNA = <dnaseqindica>2008..2140#2272..2401#2507..3527#agagaaggtcaggctgtcaccagaaagtcctttttccccggctagctcctgcatgcagctgatgagcgtcctgcatggagaagaaaagaacagatggtgacactgaattccaagagtgagtatcacttttattttaattgatacatactacatacatacagacaccggcgatgtgctaattgctccaaaaatctccagaaaaaacatatagtacaaatgcatatataccacaacagacaatgcaagcctccagaacggatgggatccgtctgcatgaggaatcaaaggacaaggatgatcagctggaaaccagattataaaatcatcaatcaatgccttttgattcgccgcgcgcttgtttaatgtttaatgggggggatgagtatccgctgtcacatgggcacaggaggggggatggatgccattacaatcctaatcatggaatcatggattaaacttttcccccttttcctttcatcaggataccaggccataatacttgcattgactagctcatttgggatgaatactataactccaaatgtttttgtctctgtcctccaggcccttgcatcttttcttttctttttttccagtacttctaaattccaagaaacacaaccggcctctccacaatgatcaatcgatcgaccgatcggtgttcccattgacggcagagacagtcagcagacaaatcattattcctgtacctgcgcaattatctgtgcaattatggggaagctcaccgttctgaagaactgatcaccacagacacgctcaacgtgcttcatctcggattggagaagcagatacggatttccgaatgaaaattgctagggtatctagctgcatgcccatggtaaacaaaggggagaagatgccctctgtcctggaataccaacatctgatgccaccacttctttttccccaggaccccaactgtgatgattgacggggagcttttccacagagacaagtgatccagtgacttacctgaaaagcaagagaaataaaggacaatacttaggtctgacacataaaatcttgcaggtgggagaaaatgaggtgcacatgcacgcacgcacgcacagcacaacacagcacagcagctaacaaaattgggacttaattggcaacagaagaaaggtggacatggcctcccagtcccagcactccagcagtagtctgctgctttctttgcccctgcatgaaacactcgtgatgtacaagtagctgcaggaaagaaaataaaaggagaggaaaaaaggatttaaaagagagaaaatttctgatttctagtagaaaatggtgtactggctgggtcgcagtcaatcaacatgggagcaagaacatcagtccttgtcctaataatgtaaaccctgatggactggttttactttcacttgctgactgattctcatcaaacaagtacactggaaatgggaaacgagataaaaggaaaaaaaaaaaggcgaagaaggaagaagatggaacagttttttgtacaaggccgcgacaattaaaatatcggtggagacggacggcaaccccaccagttttggcaccggacatagattcttaggagatgacgagacagaccccccacacgcacagccaggaagcaaccaaggcaaggggttaaacctcccttctcacaaccaccaccaccaccaccaccacctttaaaagaaggtgctaaagggggtgtcctgcaaagaaaaggagaggagtgccccctaacctttccctgctttccactgaaatctcctatccgcaaccatacagttgctcaattctggtctcagccaaagccccaatcattcatcgttatataggtcactataccctcccttgcatttcccaccaccaccccttgaagccatgaatcgctgaagaagtcgtctgcgctactgctaccaccggggaaggattagctgcgcagaattgtgcgagcgaagcctgccagccgtgcgaatttcaagctccgaggtcctgcattgcactgaaatggggaggcattcttgctgctacaagcagaaattgaggaaggggctctggtcccctgaggaggatgagaagctcatgaatcacataaccaagcatggccatggctgctggagttctgttcctaaacttgcaggtgagctcaaacaagtcttctgcatttcctcgtttataccagcttccgattcttctcttatctcttctccaacaattctactccctgaattggtccaaaattctaaatttcttcctggtgaattgttgcagggctccaaagatgcggcaagagctgcaggctgaggtggataaactatctgaggcctgacctcaagagaggtgcattctctcaggaggaagaagacctcatcattgagctccatgctgtccttgggaacaggtaaacttcaatctcaattggcactaccaaaattcaggactagtaactgcaaggcaacactttgatacatcaactaacacagcccttctatttttccatgagaaggtggtctcagattgcagctcagctgcctgggaggactgacaacgagatcaagaatctctggaattcttgcatcaagaagaagctccggcagaaaggcattgatcccaacacccacaagcccctcaccgaggctgatcgcaggggagcagcacccacagtcagcaccgagaggacctcagggtccagcgacgtcaacccgtcaagtgctggtgctctagggaacttgagccacctcctcagcgagacagcacaatcatcaatgctgctgccggtgtatgataagaatcaccctgaaactgcaagcttgccacgccctaaggtgccaccaaaggagttgtttcttgaccagcttactgccggtcacgagagcccatcaagttgccgctcatcaggtccaaccctgtattttcctttccagcaaccattaggctacagtaatgaatgtggcactggggatggtgcgagtatgaattcactctggttcaaccagaatgatttcaactgcagcacaatctccaccgtgatgccaccagtttcaccatcagccctctcaacatcaatggggctgaatcttcccccagaaaatcctcgtcacggaggcactggcattggcaacaccccgttctactgggatggttccaatcctagcagcagcggcagtactgggagcagcggaagcaacagtatgggattcgagccacagagcacaacctcaattttggagaacagtgtattcccatggacagatatcggacaagagaaagataccagagttcacttagtggaggaactcaagtggcctgatttgctccatggaacctttgctgaggcgacgacagccatgcagaaccagagccaatcattatacgatgatgtgatcaaggcagagagccaattcaacatggaagggatatgtgcctcttggttccagaatcagcaaccacaacaacagctgcaagcagcatcagacatgtatgataaagacttgcaaagattgcccttgtcttttgaacatatctaggtgcaatgctacgccatgcatggaacagagcagagatcagaagaagcagaaacttgtaactctcgcatattgattggcaggcaaaacactgaagtgtttgatgttttgacacagaatcgacctcaacactttctcctcacttaaagatcctacagtgtcatggaaaagacagctctggccttacgagtagcagaagaagggatagaaaagtacgttctagagtctccctcttttctcttgaaatttgctgttttttgtacacgacaactcaacttttggatacttgagttttggttcactctgtttatcaaataaatatagacacgcatgggcaaaacatgtgtcggtagctctcacaaaccatacaagtagtcccaagcttttcaactgctaccatgcacgtacatgcaaattaattattgcatgttgtatttttatttcttttgagaagttgccgacaaagtgcagttgtatatttgtaaaggaaaaaaattggaacattgaccc</dnaseqindica>|
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==Labs working on this gene==
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Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001061132.1 RefSeq:Os05g0140100]|
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* State Key Laboratory of Vegetation and Environmental Change, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, People’s Republic of China
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}}
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[[Category:Genes]]
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==References==
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[[Category:Japonica mRNA]]
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<references>
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[[Category:Oryza Sativa Japonica Group]]
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* <ref name="ref1">
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[[Category:Japonica Genes]]
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Dai X, Wang Y, Yang A, Zhang WH. OsMYB2P-1, an R2R3 MYB transcription factor,
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[[Category:Japonica Chromosome 5]]
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is involved in the regulation of phosphate-starvation responses and root
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[[Category:Chromosome 5]]
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architecture in rice. Plant Physiol. 2012 May;159(1):169-83. doi:
 +
10.1104/pp.112.194217. Epub 2012 Mar 6. PubMed PMID: 22395576; PubMed Central
 +
PMCID: PMC3375959.
 +
</ref>
 +
</references>
 +
 
 +
 
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==Structured Information==
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    [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 5]]

Latest revision as of 03:52, 22 October 2016

The rice Os05g0140100 was reported as OsMYB2P-1 in 2012 [1] by researchers from China.

Annotated Information

Function

  • The rice OsMYB2P-1 encodes R2R3 MYB Transcription Factor.
  • OsMYB2P-1 is Involved in the Regulation of Phosphate-Starvation Responses and Root Architecture in Rice.

Phenotypic analysis

  • Overexpression of OsMYB2P-1 in Arabidopsis (Arabidopsis thaliana) and rice enhanced tolerance to Pi starvation, while suppression of OsMYB2P-1 by RNA interference in rice rendered the transgenic rice more sensitive to Pi deficiency.
  • Furthermore, primary roots of OsMYB2P-1-overexpressing plants were shorter than those in wild-type plants under Pi-sufficient conditions, while primary roots and adventitious roots of OsMYB2P-1- overexpressing plants were longer than those of wild-type plants under Pi-deficient conditions.
  • These results suggest that OsMYB2P-1 may also be associated with the regulation of root system architecture.

Expression

  • Expression of OsMYB2P-1 was induced by Pi starvation.
  • Overexpression of OsMYB2P-1 led to greater expression of Pi-responsive genes such as Oryza sativa UDP-sulfoquinovose synthase, OsIPS1, OsPAP10, OsmiR399a, and OsmiR399j.
  • In contrast, overexpression of OsMYB2P-1 suppressed the expression of OsPHO2 under both Pi-sufficient and Pi-deficient conditions.

Subcellular localization

  • OsMYB2P-1 was localized in the nuclei and exhibited transcriptional activation activity.

You can also add sub-section(s) at will.

Labs working on this gene

  • State Key Laboratory of Vegetation and Environmental Change, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, People’s Republic of China

References

  1. ↑ Dai X, Wang Y, Yang A, Zhang WH. OsMYB2P-1, an R2R3 MYB transcription factor, is involved in the regulation of phosphate-starvation responses and root architecture in rice. Plant Physiol. 2012 May;159(1):169-83. doi: 10.1104/pp.112.194217. Epub 2012 Mar 6. PubMed PMID: 22395576; PubMed Central PMCID: PMC3375959.


Structured Information