Difference between revisions of "Os05g0144800"

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(Created page with "{{JaponicaGene| GeneName = Os05g0144800| Description = Similar to TFIIH basal transcription factor complex helicase subunit (EC 3.6.1.-) (DNA-repair protein complementing XP...")
 
 
(One intermediate revision by one other user not shown)
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{{JaponicaGene|
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Please input one-sentence summary here.
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GeneName = Os05g0144800|
 
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Description = Similar to TFIIH basal transcription factor complex helicase subunit (EC 3.6.1.-) (DNA-repair protein complementing XP-D cells) (Xeroderma pigmentosum group D complementing protein) (CXPD) (DNA excision repair protein ERCC-2)|
 
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Version = NM_001061162.1 GI:115462054 GeneID:4337788|
 
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Length = 5315 bp|
 
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Definition = Oryza sativa Japonica Group Os05g0144800, complete gene.|
 
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Source = Oryza sativa Japonica Group
 
  
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  ORGANISM  Oryza sativa Japonica Group
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==Annotated Information==
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            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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===Function===
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            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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Please input function information here.
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            clade; Ehrhartoideae; Oryzeae; Oryza.
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|
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===Expression===
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Chromosome = [[:category:Japonica Chromosome 5|Chromosome 5]]|
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Please input expression information here.
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AP = Chromosome 5:2562850..2568164|
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CDS = 2563143..2563253,2563518..2563626,2564050..2564126,2564238..2564316,2564501..2564590<br>,2565222..2565346,2565731..2565911,2566155..2566348,2566451..2566854<br>,2566962..2567044,2567202..2568025|
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===Evolution===
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GCID = <gbrowseImage1>
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Please input evolution information here.
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name=NC_008398:2562850..2568164
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source=RiceChromosome05
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You can also add sub-section(s) at will.
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preset=GeneLocation
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</gbrowseImage1>|
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==Labs working on this gene==
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GSID = <gbrowseImage2>
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Please input related labs here.
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name=NC_008398:2562850..2568164
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source=RiceChromosome05
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==References==
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preset=GeneLocation
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Please input cited references here.
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</gbrowseImage2>|
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CDNA = <cdnaseq>atgaagttcgacctggagggcctgacggtgcacttcccgtacgcggcgatctacccggagcagcacgcgtacatgggcgagctgaagcgcgccctcgacgcgcgcggccacgcgctgctcgagatgccgacgggcaccggcaagacgtcggcgctcatctccctcatcacctcctactccctcgccagcccgtcccgcccgctccgcctcatctactgcacccgcaccgtccacgagatggagaagaccctcgccgagctccgcctcctcttcgcccacctccccgccgccgcctcccgctccctcctcgccctcggcctctcctcccgcaagaacctctgcgtccacccccaggcctccgccgccgccgcccgcgactccgtcgacaccgcctgccgccgcctcaccgcgtcctgggtgcgcgacagggccgcctccgacccggactccaccccgctctgcgacttcttcgagtccttcgaccgcgccgccgccgccggtgacctcgcctcctacatgccccccggcgtctacaccctcgccgacctccgcgccctcggccgcgaccgcgggatctgcccctacttcctcgcgaggcagatggtcaagtacgccaatgtcgtggtctacagctaccagtacctgattgatcccaaggtggccagcattgtgtccagggagatgcagaaggagtgcgtcgtcgtcttcgacgaggcgcacaacatcgataatgtctgcattgaggctctcagtgtcagcatccgcaagcagacgctcgaaggtgccgagcgaaacttgcggcgcatctcgcaagagatcgataggttcaaggccactgatgccaataggcttcgtgctgaatacaacaggctggttgatggattggcacagaggggaaacctgccaatatcggatgcttggctcgcgaacccggccttgcctgaggacattctgaaggaggctgtaccaggaaacatcaggagggctgagcattttcttgctgttttgcggaggcttgtcaggttcctagatggacgcctggaaacagagaatgttgagaatgaaatgcctgttgcctttgttgcttcaatccattcccaggctggaattgaccagaaaatgttaaggttttgttatgatcggctacactctctaatgcttaccttggagataaccgatacagatgagttcatgcacatccagacaatttgtgactttgccacattgattggaacttatacacggggcttttctataataatagaaccctatgatgagagaatgcctgatatccgtgatcctgtgattcagctcagttgccatgatgcatcgcttgcaatacagcctgtttttgagcgttttcaaacagtagtcataacttctggtactctcagcccaatagacctctaccctcgccttttgaactttaatcctgttataagcaggagcttcacaatgtctttaacaagggattgcatatgtcccatggtcttgacaagaggaagtgaccagctacctgtcagtacaaagtttgatatgcgtagcgatcctggcgttgtaaggaattatggtcggctcttgctggagatggcttctgctgtgccagatggcatagtttgtttttttgtcagttactcttatatggatggcattgtcaacagctggaatgagatgggtattttgcaggacatcatgcagcataagttggtattcattgaaacaccagatgttgttgagacaacattggctcttgataattacagaaaggcatgtgattgtggaagaggtgctatattcttttccgttgccaggggcaaagtagccgaaggtattgattttgatcgacactatggcagacttgtgatcatgtttggtgttcctttccagtacacactcagcaggatattacttgctaggttggagtacctaagagaaacttttcaaataaaggagggtgacttcctgaccttcgatgctttgaggcaagctgcgcaatgtgttggccgtgtgatccgttctaaagcagattatggaatgatgatatttgctgacaagagatacagtcgccatgataaacggtctaaactgcctgggtggatactgtcacacttacatgatgcgcacctaaatctgagcactgatatggctttgcatatagctcgtgagttcctacggaggatggcgcagccttacgataagacggggagcggcggcaacaagactctcttaaccgaagaggatttgcagaatatggcgcaggacgccatggagatgtga</cdnaseq>|
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==Structured Information==
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AA = <aaseq>MKFDLEGLTVHFPYAAIYPEQHAYMGELKRALDARGHALLEMPT                    GTGKTSALISLITSYSLASPSRPLRLIYCTRTVHEMEKTLAELRLLFAHLPAAASRSL                    LALGLSSRKNLCVHPQASAAAARDSVDTACRRLTASWVRDRAASDPDSTPLCDFFESF                    DRAAAAGDLASYMPPGVYTLADLRALGRDRGICPYFLARQMVKYANVVVYSYQYLIDP                    KVASIVSREMQKECVVVFDEAHNIDNVCIEALSVSIRKQTLEGAERNLRRISQEIDRF                    KATDANRLRAEYNRLVDGLAQRGNLPISDAWLANPALPEDILKEAVPGNIRRAEHFLA                    VLRRLVRFLDGRLETENVENEMPVAFVASIHSQAGIDQKMLRFCYDRLHSLMLTLEIT                    DTDEFMHIQTICDFATLIGTYTRGFSIIIEPYDERMPDIRDPVIQLSCHDASLAIQPV                    FERFQTVVITSGTLSPIDLYPRLLNFNPVISRSFTMSLTRDCICPMVLTRGSDQLPVS                    TKFDMRSDPGVVRNYGRLLLEMASAVPDGIVCFFVSYSYMDGIVNSWNEMGILQDIMQ                    HKLVFIETPDVVETTLALDNYRKACDCGRGAIFFSVARGKVAEGIDFDRHYGRLVIMF                    GVPFQYTLSRILLARLEYLRETFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIF                    ADKRYSRHDKRSKLPGWILSHLHDAHLNLSTDMALHIAREFLRRMAQPYDKTGSGGNK                    TLLTEEDLQNMAQDAMEM</aaseq>|
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    [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 5]]
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DNA = <dnaseqindica>4912..5022#4539..4647#4039..4115#3849..3927#3575..3664#2819..2943#2254..2434#1817..2010#1311..1714#1121..1203#140..963#acgggcacggcattgtaacgaacacctcacgcgcacaccctcccctccccacggcggcggcggcggcggcgcgtgcagccggcgattccgcctctcctccaaactccggcggcccaccggccccgacctcgccgccgcgatgaagttcgacctggagggcctgacggtgcacttcccgtacgcggcgatctacccggagcagcacgcgtacatgggcgagctgaagcgcgccctcgacgcgcgcggccacgcgctgctcgagatgccgacgggcaccggcaagacgtcggcgctcatctccctcatcacctcctactccctcgccagcccgtcccgcccgctccgcctcatctactgcacccgcaccgtccacgagatggagaagaccctcgccgagctccgcctcctcttcgcccacctccccgccgccgcctcccgctccctcctcgccctcggcctctcctcccgcaagaacctctgcgtccacccccaggcctccgccgccgccgcccgcgactccgtcgacaccgcctgccgccgcctcaccgcgtcctgggtgcgcgacagggccgcctccgacccggactccaccccgctctgcgacttcttcgagtccttcgaccgcgccgccgccgccggtgacctcgcctcctacatgccccccggcgtctacaccctcgccgacctccgcgccctcggccgcgaccgcgggatctgcccctacttcctcgcgaggcagatggtcaagtacgccaatgtcgtggtctacagctaccagtacctgattgatcccaaggtggccagcattgtgtccagggagatgcagaaggagtgcgtcgtcgtcttcgacgaggcgcacaacatcgataatgtctgcattgaggctctcagtgtcagcatccgcaagcagacgctcgaaggtgccgagcgaaacttgcggcgcatctcgcaagagatcgataggtacctggtgttgaagaagcttgcagctactaatatgcataaaaaaacatgaattctttgtttccaggattgcttttatgatttccttaagagcatccaactttgtgataaatagttgaagcttgcttgctcactaattgccttatctgggaggaaggttcaaggccactgatgccaataggcttcgtgctgaatacaacaggctggttgatggattggcacagaggggaaacctgccaagtgagtaccattttttctttcactaattctgtgtcttagactgctcattgtggttggtctttctgggtcagttaatagtttacgataaaatatttcttgttatgtagtatcggatgcttggctcgcgaacccggccttgcctgaggacattctgaaggaggctgtaccaggaaacatcaggagggctgagcattttcttgctgttttgcggaggcttgtcaggttcctagatggacgcctggaaacagagaatgttgagaatgaaatgcctgttgcctttgttgcttcaatccattcccaggctggaattgaccagaaaatgttaaggttttgttatgatcggctacactctctaatgcttaccttggagataaccgatacagatgagttcatgcacatccagacaatttgtgactttgccacattgattggaacttatacacggggcttttctataataatagaaccctatgatgagagaatgcctgatatccgtgatcctgtgattcaggtactcattcttctctatatgacaataatctctaatcttaactgtcatcaaaagtcgtcaaagtgcattattgatatcctaatcaatttctatgtgttgcagctcagttgccatgatgcatcgcttgcaatacagcctgtttttgagcgttttcaaacagtagtcataacttctggtactctcagcccaatagacctctaccctcgccttttgaactttaatcctgttataagcaggagcttcacaatgtctttaacaagggattgcatatgtcccatggtcttgacaagaggaaggtatggaccgggccttcaaaatttcatgtggcatatattattttgaaagcaagcaactaatttatccattgcatgttttaaatactagcatagcatctattgaatctttcttcatcctttagagcatcatcgcatgaacttagtttagtttttgtattgggttttggctctcaaaattctagtcttactggtgatattgcaaaatcttgatgtataacttcaaatattccatcacattttcagtgaccagctacctgtcagtacaaagtttgatatgcgtagcgatcctggcgttgtaaggaattatggtcggctcttgctggagatggcttctgctgtgccagatggcatagtttgtttttttgtcagttactcttatatggatggcattgtcaacagctggaatgagatgggtattttgcaggttagtttctttaccagtacattattctggtatcgagcagtctatagaatataaatctagtgcaaaactcttcatggattatgacattgaatctcgttatgtcaccatataaagtctaacaattgcacaaatgcattgtttcagttggaaaaacttgtagtactgctctggaacagtcacttgtagtactatatatggtgtctaagcctctaatgttcttattacatgtgcagtttattgtactgctaaaaagtgcattgtctgagctgatttcacatgattaatgcttttactgttctcatgaatacagcattcttggcaaagccttgataacacgcaatgcattagcacctaatatgaaaatcttatgacttcaatttgcaggacatcatgcagcataagttggtattcattgaaacaccagatgttgttgagacaacattggctcttgataattacagaaaggcatgtgattgtggaagaggtgctatattcttttccgttgccaggttggttcactttatattggttttgtcggaaagcacccttcaaatttagtgtcagtgttcagcttcgcaattgattggattgcttgagactattacagctattttaacatcgacccaagtaggtgataattatgtcaaaggtgatatataattactggttggccaatggtttctttattcctagtatatccgaaacaacgaagacagtattagtcaaaaataggtgtaattatgtgttaaccaaaataaatgaatgtcctagttggtacagcaattcagtaagtaatttcagaaaatgcttcaatcaggcatccaccaatatttcattgatgtgtaaacatgaggaactcatacgttgagtttttaagtttatttcttgcaaaaaaaattatcttgtccctgaatgctcaaataaattgctgccattagctcatcatctggctgatcaataggctacaataagcataacccagtaggcaccacgagctaatttaccatcattacagtatattgtagattggctacttctgttcaagtgttattattataaatgtttaagtggtcttgactcatggctacataatatgatggacatatgactcatagctaactaccactatgctcaatccaggggcaaagtagccgaaggtattgattttgatcgacactatggcagacttgtgatcatgtttggtgttcctttccagtacacactcagcaggtgaggacttattgtctgaacttaagatccatttttttgtgcaacccttgatctctatacctgagcattacttctgtgcctacgaatggttcatcatattataaaacattatctactcaatagcaacatccatggatacttactggcataatgacagcttcttttgtgtctacactgtttgcaggatattacttgctaggttggagtacctaagagaaacttttcaaataaaggagggtgacttcctgaccttcgatgctttggtaataatactacttctgccaggggaaagtagggctggatgatttgtagctttatttttctagagacatccaacaaagttttcttgacattttggattctgttaatgccagaggcaagctgcgcaatgtgttggccgtgtgatccgttctaaagcagattatggaatgatgatatttgctgacaagaggtacttgatcactgccttgacttttaactcagaaaattagaacctcgccaatcatcaagaaagcctcgttatagttagctgcctatggttgacaagaaagctccaattcttgtgctgcgtagattagcaacctgattttcgacctgcatatgctgaacaaataggctcccggtttcttgtattgagcatgtggccttggatatcacatcctactttatgacaaacgacagttacttaaatatatcttgcaaatttgttttgggtattttggtcctgaggtcttctatgtttccatttgattctgtcaaaaaaaaaaaaagcaattctaatttgtcacacgcatcctgtccatttccctgccttactggtgaccaagctttcatactccaggattgttaatatcatggtatttctcacctgcagatacagtcgccatgataaacggtctaaactgcctgggtggatactgtcacacttacatgatgcgcacctaaatctgagcactgatatggctttgcatatagctcgtgaggtatgttccataacatttatttttctttgactggtgctatgtagtttgaattgcttcaagtactgtaacttgtaatcatttaaagagcaagtttatctctaaccgataatgaagctatgcttgcccgtgttattattttccaacacaagcacaatttgcatgataaacattcttgcataacaacctgtgcaagaaattgttcagacttgtcgcattctgtgctgaatatattctaacatctggtattaccatcttgtataacagttcctacggaggatggcgcagccttacgataagacggggagcggcggcaacaagactctcttaaccgaagaggatttgcagaatatggcgcaggacgccatggagatgtgaaaccatgaaagaaattgaaagagagggagggggagagagagttttctgctgtacaatacattcaaaattgaggtagaagtcactaatgtacaaaaaaattttggctactcatgtgaaccagcatgaattcgagctgcacggttcatgctaaattgctaacaaattggtccttccaagcacatgtgatattactctgcatctgatataggtatgtacaccttaaagtccttccggatacttatatctgaatatgatggcggcctctgaatttcagacgtgtcgttacattgcct</dnaseqindica>|
 
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Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001061162.1 RefSeq:Os05g0144800]|
 
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}}
 
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[[Category:Genes]]
 
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[[Category:Japonica mRNA]]
 
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[[Category:Oryza Sativa Japonica Group]]
 
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[[Category:Japonica Genes]]
 
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[[Category:Japonica Chromosome 5]]
 
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[[Category:Chromosome 5]]
 

Latest revision as of 08:18, 14 May 2015

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information