Difference between revisions of "Os04g0477300"

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Please input one-sentence summary here.
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The rice gene Os04g0477300 was reported as '''''BET1''''' in 2011<ref name="ref1" /> by researchers from Japan.
  
 
==Annotated Information==
 
==Annotated Information==
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===Gene Symbol===
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*'''''Os04g0477300 <=> BET1, ONAC081, ONAC81, NAC81
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===Function===
 
===Function===
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Please input function information here.
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* '''''BORON EXCESS TOLERANT1''''' is a gene responsible for tolerance to boron (B) toxicity in rice (Oryza sativa).
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* '''''BET1''''' gene encodes a NAC (NAM, ATAF, and CUC)-like transcription factor and the function of the transcript is abolished in B-toxicity-tolerant cultivars.
  
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===Expression===
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===Expression ===
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Please input expression information here.
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* Quantitative RT-PCR analysis revealed that '''''BET1''''' gene was expressed mainly in the roots and the expression level was less in the shoots in 7-d-old seedlings.
  
 
===Evolution===
 
===Evolution===
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Please input evolution information here.
 
  
 
You can also add sub-section(s) at will.
 
You can also add sub-section(s) at will.
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==Labs working on this gene==
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* Laboratory of Plant Nutrition, Division of Applied Life Sciences (K.O., T.M.) and Laboratory of Breeding, Division of Applied Biologies (Y.O.), Graduate School of Agriculture, Kyoto University, Kyoto 606–8502, Japan;
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* Department of Biological Resources Management, School of Environmental Science, University of Shiga Prefecture, Hikone 522–8533, Japan (A.S);
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* Laboratory of Plant Nutrition and Fertilizers, Department of Applied Biological Chemistry, Graduate School of Agricultural and Life Sciences, University of Tokyo, Tokyo 113–8657, Japan (T.F.)
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==References==
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<references>
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* <ref name="ref1">
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Ochiai K, Shimizu A, Okumoto Y, Fujiwara T, Matoh T. Suppression of a NAC-like
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transcription factor gene improves boron-toxicity tolerance in rice. Plant
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Physiol. 2011 Jul;156(3):1457-63. doi: 10.1104/pp.110.171470. PubMed PMID:
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21543724; PubMed Central PMCID: PMC3135931.
  
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==Labs working on this gene==
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</ref>
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Please input related labs here.
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</references>
  
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==References==
 
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Please input cited references here.
 
  
 
==Structured Information==
 
==Structured Information==
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{{JaponicaGene|
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    [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 4]]
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GeneName = Os04g0477300|
 
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Description = No apical meristem (NAM) protein domain containing protein|
 
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Version = NM_001187055.1 GI:297723240 GeneID:9269895|
 
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Length = 2334 bp|
 
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Definition = Oryza sativa Japonica Group Os04g0477300, complete gene.|
 
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Source = Oryza sativa Japonica Group
 
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  ORGANISM  Oryza sativa Japonica Group
 
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            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
 
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            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
 
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            clade; Ehrhartoideae; Oryzeae; Oryza.
 
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|
 
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Chromosome = [[:category:Japonica Chromosome 4|Chromosome 4]]|
 
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AP = Chromosome 4:24284133..24286466|
 
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CDS = 24285178..24285350,24285446..24285632,24286154..24286324|
 
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GCID = <gbrowseImage1>
 
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name=NC_008397:24284133..24286466
 
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source=RiceChromosome04
 
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preset=GeneLocation
 
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</gbrowseImage1>|
 
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GSID = <gbrowseImage2>
 
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name=NC_008397:24284133..24286466
 
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source=RiceChromosome04
 
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preset=GeneLocation
 
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</gbrowseImage2>|
 
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CDNA = <cdnaseq>acatgtctcacttctgccttttactgcaggccatggattatagctggtggaaaggtaattgctacaaaaataagaaatgcaactcagcttctgagttgtaaacttggagaattggttccagaagcatggagggaatgcccaaactgcaaatgtcacattgataatagcgatgttactttacagtggccagaattccctgacggtgttaaatttgatccatctgatcttgaagtacttgaacatttagaaagaaaaattaacctgggaaatccagggcctcagggtcttattgatcacttcatcccaactctagaaaaggtggaaggaatctgctatacacatcctgaaaatctccccggtatcaagctggacggcaccagcagccatttcttccacagaatatcaaacgcatatggttctggtcagcgcaagcgtagaaagataagccacaccggccatgctgcttctgacgagaacataagatggcacaaaactggaaaatccaacagatttaccataacggtgtcttaa</cdnaseq>|
 
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AA = <aaseq>TCLTSAFYCRPWIIAGGKVIATKIRNATQLLSCKLGELVPEAWR                    ECPNCKCHIDNSDVTLQWPEFPDGVKFDPSDLEVLEHLERKINLGNPGPQGLIDHFIP                    TLEKVEGICYTHPENLPGIKLDGTSSHFFHRISNAYGSGQRKRRKISHTGHAASDENI                    RWHKTGKSNRFTITVS</aaseq>|
 
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DNA = <dnaseqindica>1117..1289#835..1021#143..313#tatgtagaagaagtctttccatatctgtaacttagcacaattatactatgttaagctgattaaccttaaaatctgaactttttggtgaatgacaaggcgatagattgtccttgagataagttgggactttttgttatgatgaacatgtctcacttctgccttttactgcaggccatggattatagctggtggaaaggtaattgctacaaaaataagaaatgcaactcagcttctgagttgtaaacttggagaattggttccagaagcatggagggaatgcccaaactgcaaatgtcacattgataatagcgatgtaagttcagctacctattgtacttatgaatgcttgatttaactttttagttcagttgtctgatactctgatgatgttttgccattaaagtttcgtgtgtagaaaatcaacactagacaacattacttccaaagagcgatgctctggtgctctctactggtagtattatactatcagtctactggtagtattatactaccggtatattgggggtaaattagtaatttactaatactatgattaggagtaactattatttatgttttttttccggctaaatcgatttatgatcattcattattcactaaaaaaggtgttttgctcattactgtgctgtgtgctacactttattcctattgtcctggctcccacgtgtcacaatttcaatataaaatccacaaagcttgtggctcccttgccttgggtatgacgaggttggctttaagcagaaatatcagtagggtaagtttcacattttctatgcatttcttgttggtgctaaataaaaaatctcattgcaggttactttacagtggccagaattccctgacggtgttaaatttgatccatctgatcttgaagtacttgaacatttagaaagaaaaattaacctgggaaatccagggcctcagggtcttattgatcacttcatcccaactctagaaaaggtggaaggaatctgctatacacatcctgaaaatctccccggtactggattatatattttaagttgttatcaggccttttgaactagtagtaattagttagctcatgtgtcatacattcctctgtaattctgtcaggtatcaagctggacggcaccagcagccatttcttccacagaatatcaaacgcatatggttctggtcagcgcaagcgtagaaagataagccacaccggccatgctgcttctgacgagaacataagatggcacaaaactggaaaatccaacagatttaccataacggtgtcttaaaaggatggaagaaaatactggttctttacaaaggctccaaaaagaacaagatagtacaagctaattgggttatgcatcaatataatcttggtgtggaagaaggcggggaggacggagagcttgttgtttccaaggtattctaccaattatcctccaagcaaactggcacgcctgaaatggactctgttactgaagaagcatctgatgcactgaccataagaagtgatcccattacacccataacgaaccctccgctgcctcgctgcctgatgaacagcccgtgtgacacggagcagaatggcaccatttcacatgatcaggtaagccatgctactgataatgaggatagggcaaacaaattaattgctctttctttttttctttttttttgacaatacttcatgctgttgcattgctgaattttacacaggagggggaatgcagcacatccactctccggcccatggtagaagctggaaaccgtgcagggtgttctgctggagcgtcaacagccggggacttcaacgaagatctgctgcagcgctgcgagtttccggaggaccccgtcccaactcttgatgacacgctgccttttctttacacggacgaaacggaccttttcagctgggaagtaagtgtgctttgctcgtaatactcctttctttttctgacttatattttgttacggttaagaacaaaatctgatttgcctttcctgaattgaatttcttgcaataggattttcaattcgggtcgcaggaaagcttcggctgggtggatggggatcacacgtaagtgatgctctgaggagttgtgggaagcagcggtgctgcaggaagacgccttcagggtttagggtctagggttcgccactctagtgagctgcaacactcttttagagctgcagcgctttttataagagtgacgaaatttggagtggtcaacccttcatataactgatctccgaaaattttgtatatggatttgcgtattaacaccagctctatgtagccgagcagtaagtatagtagtctctcttccccgt</dnaseqindica>|
 
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Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001187055.1 RefSeq:Os04g0477300]|
 
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}}
 
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[[Category:Genes]]
 
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[[Category:Japonica mRNA]]
 
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[[Category:Oryza Sativa Japonica Group]]
 
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[[Category:Japonica Genes]]
 
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[[Category:Japonica Chromosome 4]]
 
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[[Category:Chromosome 4]]
 

Latest revision as of 01:59, 13 December 2016

The rice gene Os04g0477300 was reported as BET1 in 2011[1] by researchers from Japan.

Annotated Information

Gene Symbol

  • Os04g0477300 <=> BET1, ONAC081, ONAC81, NAC81

Function

  • BORON EXCESS TOLERANT1 is a gene responsible for tolerance to boron (B) toxicity in rice (Oryza sativa).
  • BET1 gene encodes a NAC (NAM, ATAF, and CUC)-like transcription factor and the function of the transcript is abolished in B-toxicity-tolerant cultivars.

Expression

  •  Quantitative RT-PCR analysis revealed that BET1 gene was expressed mainly in the roots and the expression level was less in the shoots in 7-d-old seedlings.

Evolution

You can also add sub-section(s) at will.

Labs working on this gene

  • Laboratory of Plant Nutrition, Division of Applied Life Sciences (K.O., T.M.) and Laboratory of Breeding, Division of Applied Biologies (Y.O.), Graduate School of Agriculture, Kyoto University, Kyoto 606–8502, Japan;
  • Department of Biological Resources Management, School of Environmental Science, University of Shiga Prefecture, Hikone 522–8533, Japan (A.S);
  • Laboratory of Plant Nutrition and Fertilizers, Department of Applied Biological Chemistry, Graduate School of Agricultural and Life Sciences, University of Tokyo, Tokyo 113–8657, Japan (T.F.)

References

  1. ↑ Ochiai K, Shimizu A, Okumoto Y, Fujiwara T, Matoh T. Suppression of a NAC-like transcription factor gene improves boron-toxicity tolerance in rice. Plant Physiol. 2011 Jul;156(3):1457-63. doi: 10.1104/pp.110.171470. PubMed PMID: 21543724; PubMed Central PMCID: PMC3135931.


Structured Information