Difference between revisions of "Os05g0358500"

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(Created page with "{{JaponicaGene| GeneName = Os05g0358500| Description = Protein phosphatase 2C-like domain containing protein| Version = NM_001061838.1 GI:115463406 GeneID:4338531| Length ...")
 
 
(2 intermediate revisions by 2 users not shown)
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{{JaponicaGene|
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The rice '''''Os05g0358500''''' was reported as '''''OsPP2C48''''' in 2008 <ref name="ref1" /> by researchers from China.
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GeneName = Os05g0358500|
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==Annotated Information==
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Description = Protein phosphatase 2C-like domain containing protein|
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===Gene Symbol===
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Version = NM_001061838.1 GI:115463406 GeneID:4338531|
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*'''''Os05g0358500''''' '''''<=>''''' '''''OsPP2C48'''''
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Length = 3900 bp|
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===Function===
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Definition = Oryza sativa Japonica Group Os05g0358500, complete gene.|
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* The protein phosphatase 2Cs (PP2Cs) from various organisms have been implicated to act as negative modulators of protein kinase pathways involved in diverse environmental stress responses and developmental processes.<ref name="ref1" />
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Source = Oryza sativa Japonica Group
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* Type 2C protein phosphatases directly regulate abscisic acid-activated protein kinases in Arabidopsis.<ref name="ref1" /> <ref name="ref2" />
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===Expression===
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  ORGANISM  Oryza sativa Japonica Group
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* The expression analyses from the researchers provide evidences that PP2C genes in different subfamilies might play different functional roles in distinct signaling pathways.<ref name="ref1" />
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            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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===Knowledge extension===
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            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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* The reversible phosphorylation of proteins is a fundamental mechanism by which living organisms modulate cellular processes including cell cycle events, growth factor responses, hormone and environmental stimuli responses, metabolic control, and developmental processes.<ref name="ref1" />
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            clade; Ehrhartoideae; Oryzeae; Oryza.
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You can also add sub-section(s) at will.
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|
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==Labs working on this gene==
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Chromosome = [[:category:Japonica Chromosome 5|Chromosome 5]]|
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* State Key Laboratory of Crop Biology, College of Life Sciences, Shandong Agricultural University, Taian, Shandong 271018, PR China
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AP = Chromosome 5:16995803..16999702|
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* Biology Department, Millersville University of Pennsylvania, 288 Roddy Hall, 50 E Frederick St, PO Box 1002, Millersville PA, 17551-0302, USA
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CDS = 16995885..16996064,16996367..16996590,16996936..16997368,16999065..16999289|
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* Department of Chemistry, Fudan University, 220 Handan Road, Shanghai 200433, PR China
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GCID = <gbrowseImage1>
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* Institutes of Biomedical Sciences, Fudan University, 130 Dongan Road, Shanghai 200032, PR China
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name=NC_008398:16995803..16999702
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* Centre for Forest Biology & Department of Biology, University of Victoria, Victoria BC, V8W 3N5, Canada
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source=RiceChromosome05
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==References==
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preset=GeneLocation
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<references>
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</gbrowseImage1>|
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* <ref name="ref1">
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GSID = <gbrowseImage2>
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Xue T, Wang D, Zhang S, Ehlting J, Ni F, Jakab S, Zheng C, Zhong Y.
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name=NC_008398:16995803..16999702
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Genome-wide and expression analysis of protein phosphatase 2C in rice and
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source=RiceChromosome05
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Arabidopsis. BMC Genomics. 2008 Nov 20;9:550. doi: 10.1186/1471-2164-9-550.
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preset=GeneLocation
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PubMed PMID: 19021904; PubMed Central PMCID: PMC2612031.
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</gbrowseImage2>|
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</ref>
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CDNA = <cdnaseq>atgcggcacatctcgtcgctgctgcaggggctggcgcgctcgctgtcggtggggaaggagaggaagggcggcgacggcgacgacgggaaggcggcggcggcgacggcgacggcggtgctgaggacatcggggacgctgtggggcgagggctctgagacgttcgccgccgtctgctcccgccgcggcgagaagggcatcaaccaggactgctccatcgtctgcgagggattcgggtgcgaggaggggagcgtgttgtgcggcatcttcgacgggcacgggcagtggggccactacgtggcgaaggcggtgagggagtcgctgccgccggcgctgctccggcggtggcgggaggccgtgacgctggcggcgctcatcgacggcggcgagaagcggctctgcgagtgccggcccgacctgtggcgccagtcctacctggccgcctgcgccgccgtcgacgccgagctccgcgccagccgccgcctcgacgccgtccacagcggctgcaccgcgctgtccctcgtcaagcacggcgacctcctcgtcgtcgccaacgtcggcgactcgcgcgccgtcctggccaccgcctcccccgacgacggtggcggcgcccgcctcgccgccgtgcagctcaccgtcgacttcaagcccaacctgccccaggagagggagaggatcatggagtgcaacgggagggtgcagtgcctcgccgacgagcccggggtgcaccgggtgtggcggccggacagggagggcccaggcctcgccatgtcgcgcgccttcggcgactactgcgtcaaggattacggcgtcatctcggcgccggaggtgacgcaccgccggatcaccgcccaggaccacttcgtcatcctcgccaccgacggggtgtgggacgtggtgtcgaacgaggaggcggtgcagatcgtggcgtcggcgccggagagggagaaggcggcgaagcggctcgtcgagttcgccgtccgggcatggaggcgcaagcgccggggcatcgccgtcgacgactgctcggcgatctgcctcttcttccactcgccgccgtcctaa</cdnaseq>|
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* <ref name="ref2">
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AA = <aaseq>MRHISSLLQGLARSLSVGKERKGGDGDDGKAAAATATAVLRTSG                    TLWGEGSETFAAVCSRRGEKGINQDCSIVCEGFGCEEGSVLCGIFDGHGQWGHYVAKA                    VRESLPPALLRRWREAVTLAALIDGGEKRLCECRPDLWRQSYLAACAAVDAELRASRR                    LDAVHSGCTALSLVKHGDLLVVANVGDSRAVLATASPDDGGGARLAAVQLTVDFKPNL                    PQERERIMECNGRVQCLADEPGVHRVWRPDREGPGLAMSRAFGDYCVKDYGVISAPEV                    THRRITAQDHFVILATDGVWDVVSNEEAVQIVASAPEREKAAKRLVEFAVRAWRRKRR                    GIAVDDCSAICLFFHSPPS</aaseq>|
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Umezawa T, Sugiyama N, Mizoguchi M, Hayashi S, Myouga F, Yamaguchi-Shinozaki
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DNA = <dnaseqindica>3639..3818#3113..3336#2335..2767#414..638#acgctcgctccatcgattccttgttctagtgtttctattttttatttttggctcaagtttctagcgtttcttgatctgctgctctgcttggttgcgtttcttgatttggttgggattggttgttcttgggcttatcctgtgtagcccgtttcttggattcaaagctcagctcaggtgggaaggaagacaaagatcccacctggtgaaaacgtacggcgcagccgcagatcgattaattttcgcggaagcgtccccggccatggttgctgccctcaggccgcaggtgctgatctcttcttcaagataggaagcgaaacagagcagagcctgctcgtggaaggagaagctgagtttggctctgcagctgagactatccatctgcgacgaggaggaagaagaaggagctagcgaggatgcggcacatctcgtcgctgctgcaggggctggcgcgctcgctgtcggtggggaaggagaggaagggcggcgacggcgacgacgggaaggcggcggcggcgacggcgacggcggtgctgaggacatcggggacgctgtggggcgagggctctgagacgttcgccgccgtctgctcccgccgcggcgagaagggcatcaaccaggactgctccatcgtctgcgaggtcagtcagattctgctctcctctgcttcttgttcttgctactttgctctctctctgatctgcttgtgaaacaatgatatgatcacaattattggtggcatattagcacgtagtaactagtaacaacaatacaaatggcacatgagagaattccaacatgttaagaaaaagaaagaaattatttctttggttcatatttacagctgatttactactagtcgtctcaaatatggttcgattcaactgttgtttcttttcaccgaccatgtttttcttatggtgagattttgtccatggtgtcatgattcattgtcctcatctatgtgctctaaaaaaaaaatcttctttttctttttctcaaaaaataaaaaaaaagcggagaatactactgtggtaggactagctcttctcatttctgaccacacaagaaagcaaacaaacttcctgttcttatgtactttctattgacttctctctcgattgttcacctaatcttgtgttttagttcgctttgttctcttcatgacaattaacactatttttattattagtccattaactaactagaccagtgattgattaacgacagggtcaatttcagggtcagttaatacatagtttttgaggcatgttgttttaccaagttcttggatctggtgtttgtttttggcttctaggggttttctgatctgtgccaaaagggtcactgattacgtgtcatttatttgctgaagaaacaaggtgttttgggttctttggtatatctcacctttttcagtttgttggtgtctgggattctaaagctgcttttggttagttaaactctgtggctaaggtggatgcatggaaagtagatcacatcaacacattcttgagagttcttcctagatatgatttttggatataatagtttgttatcatcataaaaaggagagagaagagagagaaggaccttcaattagaggatatgtttttcttttcttaatatttacagcagtcattatgtaatgttcacaagcctttcttttttctttataatattgtaaaccagtaagaggtatcatagaataaacagcactggacaaatttggaaggacaggctgcaattagaaaaaatgatcgctcttttctattttatttatttatttattttgcaaccaaaggagtaaggacaaccatgacctaccagctctcaaaagctggcttggttcagttggttcaccatgatgtcacaatggaatctttaattttttgcattaacatgcatgattgtaccctagaacgttaaacaaatactcagagcagaaccacacacgtaatgtcaaaacaccgcaaaacaaaaacgaaaaaaaaaatcaacaagaacaatgtacaatttgatcatattggcttcgtactattccatccatttcttattacaagacgttttattttttttcctaaagctagcaacatttataatatcaaattagtcttattataacagcatttaatatattttgataatatgctagttttgtgtcaaaaatattttttaaaaaaattgattaaatttttaaaagtttaactagaaacaaatgaaaaggacttgtactataaaatagagggagtacaaaatttgacaaaaaaaacaagtaaatattagatttttgagctgaattctgaaccaaagcaaatttgtcttgtgtgtggtcagggattcgggtgcgaggaggggagcgtgttgtgcggcatcttcgacgggcacgggcagtggggccactacgtggcgaaggcggtgagggagtcgctgccgccggcgctgctccggcggtggcgggaggccgtgacgctggcggcgctcatcgacggcggcgagaagcggctctgcgagtgccggcccgacctgtggcgccagtcctacctggccgcctgcgccgccgtcgacgccgagctccgcgccagccgccgcctcgacgccgtccacagcggctgcaccgcgctgtccctcgtcaagcacggcgacctcctcgtcgtcgccaacgtcggcgactcgcgcgccgtcctggccaccgcctcccccgacgacggtggcggcgcccgcctcgccgccgtgcagctcaccgtcgacttcaagcccaacctgccccgtaagttcgccgtcaaacactcacggagacatcttccagtcgtttacatgttataaaaaaattaaaataataaattaatatataatagattactccctgcaaaaaaaaatgtttttctacaacttgtataagttatttattttaaagacaacttgtataagttaaacttgaatggagtcatttatcacatattaagctacgttattgttttctaaaacctttttataaccatttacatgacataaccaacgagaggatgtctctctggagtttagaataatttctctgcttaatataagagtatgtcctaccgctattgctgatgtttgcattgcgtggatgcagaggagagggagaggatcatggagtgcaacgggagggtgcagtgcctcgccgacgagcccggggtgcaccgggtgtggcggccggacagggagggcccaggcctcgccatgtcgcgcgccttcggcgactactgcgtcaaggattacggcgtcatctcggcgccggaggtgacgcaccgccggatcaccgcccaggaccacttcgtcatcctcgccaccgacggggtaaacaaacaaacaaaatacatatacttatcatctctattttttttaatatatgacatccttaattcttattaaaaaaatttaagtaaatatcttgttttttttacttgatttatcgaattttaagcaatattaatatttttaagatttgcatatattcttttaaataagacgaataatcaaatgttacaaaagaaaatcatcaatgttatatattaagaaatggagagagtacaaaataaaattcattccatttttttaggacaaacatctcaacttgttcgtcttcgtctgcgcggcaggtgtgggacgtggtgtcgaacgaggaggcggtgcagatcgtggcgtcggcgccggagagggagaaggcggcgaagcggctcgtcgagttcgccgtccgggcatggaggcgcaagcgccggggcatcgccgtcgacgactgctcggcgatctgcctcttcttccactcgccgccgtcctaaacaacacacacgctgacacgcacgcagccaacaaaaaccgcacacgccgacgacaatgtcgccgtcgtcgttgagaggcgcc</dnaseqindica>|
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K, Ishihama Y, Hirayama T, Shinozaki K. Type 2C protein phosphatases directly
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Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001061838.1 RefSeq:Os05g0358500]|
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regulate abscisic acid-activated protein kinases in Arabidopsis. Proc Natl Acad
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}}
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Sci U S A. 2009 Oct 13;106(41):17588-93. doi: 10.1073/pnas.0907095106. Epub 2009
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[[Category:Genes]]
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Sep 29. PubMed PMID: 19805022; PubMed Central PMCID: PMC2754379.
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[[Category:Japonica mRNA]]
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</ref>
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[[Category:Oryza Sativa Japonica Group]]
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</references>
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[[Category:Japonica Genes]]
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==Structured Information==
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[[Category:Japonica Chromosome 5]]
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    [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 5]]
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[[Category:Chromosome 5]]
 

Latest revision as of 11:53, 29 March 2017

The rice Os05g0358500 was reported as OsPP2C48 in 2008 [1] by researchers from China.

Annotated Information

Gene Symbol

  • Os05g0358500 <=> OsPP2C48

Function

  • The protein phosphatase 2Cs (PP2Cs) from various organisms have been implicated to act as negative modulators of protein kinase pathways involved in diverse environmental stress responses and developmental processes.[1]
  • Type 2C protein phosphatases directly regulate abscisic acid-activated protein kinases in Arabidopsis.[1] [2]

Expression

  • The expression analyses from the researchers provide evidences that PP2C genes in different subfamilies might play different functional roles in distinct signaling pathways.[1]

Knowledge extension

  • The reversible phosphorylation of proteins is a fundamental mechanism by which living organisms modulate cellular processes including cell cycle events, growth factor responses, hormone and environmental stimuli responses, metabolic control, and developmental processes.[1]

You can also add sub-section(s) at will.

Labs working on this gene

  • State Key Laboratory of Crop Biology, College of Life Sciences, Shandong Agricultural University, Taian, Shandong 271018, PR China
  • Biology Department, Millersville University of Pennsylvania, 288 Roddy Hall, 50 E Frederick St, PO Box 1002, Millersville PA, 17551-0302, USA
  • Department of Chemistry, Fudan University, 220 Handan Road, Shanghai 200433, PR China
  • Institutes of Biomedical Sciences, Fudan University, 130 Dongan Road, Shanghai 200032, PR China
  • Centre for Forest Biology & Department of Biology, University of Victoria, Victoria BC, V8W 3N5, Canada

References

  1. ↑ 1.0 1.1 1.2 1.3 1.4 Xue T, Wang D, Zhang S, Ehlting J, Ni F, Jakab S, Zheng C, Zhong Y. Genome-wide and expression analysis of protein phosphatase 2C in rice and Arabidopsis. BMC Genomics. 2008 Nov 20;9:550. doi: 10.1186/1471-2164-9-550. PubMed PMID: 19021904; PubMed Central PMCID: PMC2612031.
  2. ↑ Umezawa T, Sugiyama N, Mizoguchi M, Hayashi S, Myouga F, Yamaguchi-Shinozaki K, Ishihama Y, Hirayama T, Shinozaki K. Type 2C protein phosphatases directly regulate abscisic acid-activated protein kinases in Arabidopsis. Proc Natl Acad Sci U S A. 2009 Oct 13;106(41):17588-93. doi: 10.1073/pnas.0907095106. Epub 2009 Sep 29. PubMed PMID: 19805022; PubMed Central PMCID: PMC2754379.

Structured Information