Difference between revisions of "Os09g0541000"

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(Created page with "{{JaponicaGene| GeneName = Os09g0541000| Description = Similar to Plasma membrane intrinsic protein (Aquaporin)| Version = NM_001070347.1 GI:115480436 GeneID:4347729| Leng...")
 
(Labs working on this gene)
 
(5 intermediate revisions by 3 users not shown)
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{{JaponicaGene|
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The rice '''''Os09g0541000''''' was reported as '''''OsPIP2;7''''' in 2008 <ref name="ref1" /> by researchers from China.  
GeneName = Os09g0541000|
 
Description = Similar to Plasma membrane intrinsic protein (Aquaporin)|
 
Version = NM_001070347.1 GI:115480436 GeneID:4347729|
 
Length = 1266 bp|
 
Definition = Oryza sativa Japonica Group Os09g0541000, complete gene.|
 
Source = Oryza sativa Japonica Group
 
  
  ORGANISM  Oryza sativa Japonica Group
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==Annotated Information==
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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===Gene Symbol===
            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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*'''''Os09g0541000''''' '''''<=>''''' '''''OsPIP2;7, PIP2.7, PIP2-7, OsPIP2-6'''''
            clade; Ehrhartoideae; Oryzeae; Oryza.
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|
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===Function===
Chromosome = [[:category:Japonica Chromosome 9|Chromosome 9]]|
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* '''''OsPIP2;7''''' was involved in rapid water transport and maintenance of the water balance in cells, and ultimately improves the tolerance of yeast and rice to low temperature stress.
AP = Chromosome 9:22141777..22143042|
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CDS = 22141808..22142236,22142336..22142557,22142659..22142781|
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===Phenotypic analysis===
GCID = <gbrowseImage1>
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* Yeast cells overexpressing OsPIP2;7 showed a higher survival rate after freeze–thaw stress.
name=NC_008402:22141777..22143042
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* Furthermore, OsPIP2;7 enhanced the transpiration rate and tolerance to low temperature when overexpressed in rice.
source=RiceChromosome09
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preset=GeneLocation
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===Expression===
</gbrowseImage1>|
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* '''''OsPIP2;7''''' was generally up-regulated in roots but down-regulated in shoots at the early stage of chilling stress.
GSID = <gbrowseImage2>
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name=NC_008402:22141777..22143042
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===Subcellular localization===
source=RiceChromosome09
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* '''''OsPIP2;7''''' was localized mainly in mesophyll cells of leaves.  
preset=GeneLocation
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* In roots '''''OsPIP2;7''''' was detected in the vascular tissues, epidermis cells and exodermis cells at the elongation zone, as well as in the epidermis cells, exodermis cells and root hair at the maturation zone.
</gbrowseImage2>|
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CDNA = <cdnaseq>atggcgtcgaaggaggaggtggccgtggagacggtggagggcggagcggcggcggcgaaggcgccgtactgggacccgccgccggcgccgctgctggacacgagcgagctgggtaagtggtcgctgtaccgtgccctcatcgcggagttcatggcgacgctcatcttcctctacgtgagcatcgccaccgtgatcgggtacaagaaccagagggccaccgtcgacgcgtgcaccggcgtcggctacctcggcgtggcgtggtcgttcggtgccaccatattcgtcctcgtctactgcaccggcggcgtctccggcgggcacatcaacccggcggtgacgctgggcctcttcttcgggcggaagctgtcgctcgtccgcaccgtgctgtacgtcgtggcgcagtgcctcggcgccatcgccggcgccggcatcgtcggcacgttcatcctcgtctacaccgtcttctccgccaccgaccccaagcgcaccgcccgcgactccttcatccccgtactcgtgccgctgccgatcgggttcgcggtgttcgtcgtgcacctggcgacgattccgatcaccggcacgggcatcaacccggcgaggagcctcggcgccgccgtgctgtacaaccagcacgcagcttggaaagaccactggatcttctgggtggggccggtgatcggggcgttcttggcggcggcgtaccacaagctggtgctgcgcggcgaggccgccaaggcgctcagctcgttcaggagcaccagcgtgacggcgtga</cdnaseq>|
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==Labs working on this gene==
AA = <aaseq>MASKEEVAVETVEGGAAAAKAPYWDPPPAPLLDTSELGKWSLYR                    ALIAEFMATLIFLYVSIATVIGYKNQRATVDACTGVGYLGVAWSFGATIFVLVYCTGG                    VSGGHINPAVTLGLFFGRKLSLVRTVLYVVAQCLGAIAGAGIVGTFILVYTVFSATDP                    KRTARDSFIPVLVPLPIGFAVFVVHLATIPITGTGINPARSLGAAVLYNQHAAWKDHW                    IFWVGPVIGAFLAAAYHKLVLRGEAAKALSSFRSTSVTA</aaseq>|
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* Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences and Graduate School of the Chinese Academy of Sciences, 300 Fenglin Road, Shanghai 200032, PR China
DNA = <dnaseqindica>32..460#560..781#883..1005#ttcgtggtgataaggagtaggagagaaggccatggcgtcgaaggaggaggtggccgtggagacggtggagggcggagcggcggcggcgaaggcgccgtactgggacccgccgccggcgccgctgctggacacgagcgagctgggtaagtggtcgctgtaccgtgccctcatcgcggagttcatggcgacgctcatcttcctctacgtgagcatcgccaccgtgatcgggtacaagaaccagagggccaccgtcgacgcgtgcaccggcgtcggctacctcggcgtggcgtggtcgttcggtgccaccatattcgtcctcgtctactgcaccggcggcgtctccggcgggcacatcaacccggcggtgacgctgggcctcttcttcgggcggaagctgtcgctcgtccgcaccgtgctgtacgtcgtggcgcagtgcctcggcgccatcgccggcgccggcatcgtcaaggggatcatgaagcgcccctacgacgcgctcggcggcggcgccaacaccgtcagcgacggctactccgccgccggcgccctcggcgccgagatcgtcggcacgttcatcctcgtctacaccgtcttctccgccaccgaccccaagcgcaccgcccgcgactccttcatccccgtactcgtgccgctgccgatcgggttcgcggtgttcgtcgtgcacctggcgacgattccgatcaccggcacgggcatcaacccggcgaggagcctcggcgccgccgtgctgtacaaccagcacgcagcttggaaagaccacgtgagagagaacgaacaaaattaaattcattcgaatagattcacttcttaaaactttttcttaatcaatcgactagtaattaatttgatgaattttggcagtggatcttctgggtggggccggtgatcggggcgttcttggcggcggcgtaccacaagctggtgctgcgcggcgaggccgccaaggcgctcagctcgttcaggagcaccagcgtgacggcgtgaggaagacgacgatgttcatttgatacgagagatcgatcagctgcttgattaattgttcttgatttcgttgttcaatttacaatctacgactatggacgatcatgcatatgatatgatcgatgcatgcgtctgttgtcagttttatttgggactttcagtgtgagagtgtgaatggttgtaaaataagtggagtgcctgtatgtatctgtatgcatgcacggcacggtacgcgtgtttatggatgatgctttgttacgtagc</dnaseqindica>|
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Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001070347.1 RefSeq:Os09g0541000]|
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==References==
}}
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<references>
[[Category:Genes]]
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* <ref name="ref1">
[[Category:Japonica mRNA]]
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Li GW, Zhang MH, Cai WM, Sun WN, Su WA. Characterization of OsPIP2;7, a water
[[Category:Oryza Sativa Japonica Group]]
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channel protein in rice. Plant Cell Physiol. 2008 Dec;49(12):1851-8. doi:
[[Category:Japonica Genes]]
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10.1093/pcp/pcn166. PubMed PMID: 18988636.
[[Category:Japonica Chromosome 9]]
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[[Category:Chromosome 9]]
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</ref>
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</references>
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==Structured Information==
 +
[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 9]]

Latest revision as of 14:16, 25 March 2017

The rice Os09g0541000 was reported as OsPIP2;7 in 2008 [1] by researchers from China.

Annotated Information

Gene Symbol

  • Os09g0541000 <=> OsPIP2;7, PIP2.7, PIP2-7, OsPIP2-6

Function

  • OsPIP2;7 was involved in rapid water transport and maintenance of the water balance in cells, and ultimately improves the tolerance of yeast and rice to low temperature stress.

Phenotypic analysis

  • Yeast cells overexpressing OsPIP2;7 showed a higher survival rate after freeze–thaw stress.
  • Furthermore, OsPIP2;7 enhanced the transpiration rate and tolerance to low temperature when overexpressed in rice.

Expression

  • OsPIP2;7 was generally up-regulated in roots but down-regulated in shoots at the early stage of chilling stress.

Subcellular localization

  • OsPIP2;7 was localized mainly in mesophyll cells of leaves.
  • In roots OsPIP2;7 was detected in the vascular tissues, epidermis cells and exodermis cells at the elongation zone, as well as in the epidermis cells, exodermis cells and root hair at the maturation zone.

Labs working on this gene

  • Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences and Graduate School of the Chinese Academy of Sciences, 300 Fenglin Road, Shanghai 200032, PR China

References

  1. Li GW, Zhang MH, Cai WM, Sun WN, Su WA. Characterization of OsPIP2;7, a water channel protein in rice. Plant Cell Physiol. 2008 Dec;49(12):1851-8. doi: 10.1093/pcp/pcn166. PubMed PMID: 18988636.

Structured Information